Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46736 * 195.80057 * 3 2 1 5 5 C 1.52999 * 109.47436 * 64.99967 * 4 3 2 6 6 C 1.47195 * 109.46980 * 184.99658 * 5 4 3 7 7 C 5.34093 * 115.14395 * 210.39402 * 2 1 3 8 8 C 1.50701 * 109.46689 * 184.99954 * 4 3 2 9 9 O 1.21279 * 120.00226 * 359.97438 * 8 4 3 10 10 N 1.34780 * 120.00061 * 179.97438 * 8 4 3 11 11 C 1.39259 * 120.00051 * 174.71952 * 10 8 4 12 12 C 1.39674 * 119.57701 * 185.10648 * 11 10 8 13 13 C 1.38653 * 119.50079 * 179.74389 * 12 11 10 14 14 C 1.38346 * 118.66574 * 0.52368 * 13 12 11 15 15 C 1.40573 * 119.13154 * 359.74007 * 14 13 12 16 16 C 1.41342 * 119.79266 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99184 * 359.97438 * 16 15 14 18 18 C 1.40025 * 120.00316 * 179.97438 * 16 15 14 19 19 N 1.30742 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47220 * 120.00097 * 20 18 16 23 23 H 1.48508 * 109.47218 * 240.00345 * 20 18 16 24 24 N 1.31903 * 119.57887 * 5.37862 * 11 10 8 25 25 H 4.44650 * 5.63391 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46813 * 75.79985 * 3 2 1 27 27 H 1.08999 * 109.47125 * 315.79450 * 3 2 1 28 28 H 1.09004 * 109.46958 * 304.99338 * 4 3 2 29 29 H 1.09001 * 109.46828 * 304.99733 * 5 4 3 30 30 H 1.09000 * 109.46940 * 64.99995 * 5 4 3 31 31 H 6.34559 * 113.63463 * 207.53989 * 2 1 3 32 32 H 0.97000 * 119.99771 * 354.71528 * 10 8 4 33 33 H 1.08004 * 120.24591 * 0.02562 * 12 11 10 34 34 H 1.08003 * 120.66947 * 180.26431 * 13 12 11 35 35 H 1.08002 * 120.43389 * 179.76910 * 14 13 12 36 36 H 0.97001 * 119.99605 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3889 0.3928 5 6 2.7505 1.6910 1.8370 6 6 3.1348 3.0709 2.1759 7 6 3.4434 4.1704 2.4462 8 6 4.6573 1.4250 0.2741 9 8 5.2609 0.4376 -0.0884 10 7 5.3297 2.5548 0.5709 11 6 6.7223 2.5573 0.5679 12 6 7.4106 3.7007 0.9800 13 6 8.7971 3.6997 0.9815 14 6 9.4603 2.5607 0.5609 15 6 8.7108 1.4438 0.1526 16 6 9.3740 0.2727 -0.2792 17 1 10.4534 0.2383 -0.2950 18 6 8.6318 -0.8426 -0.6864 19 7 7.3252 -0.8006 -0.6677 20 14 9.5085 -2.3905 -1.2564 21 1 10.9771 -2.1826 -1.1845 22 1 9.1255 -3.5272 -0.3808 23 1 9.1198 -2.6921 -2.6576 24 7 7.3745 1.4818 0.1707 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2513 -0.9963 27 1 3.0097 -0.7358 0.7165 28 1 2.7204 2.1366 -0.2706 29 1 1.6715 1.5779 1.9430 30 1 3.2564 0.9976 2.5088 31 1 3.7180 5.1546 2.6879 32 1 4.8437 3.3661 0.7865 33 1 6.8667 4.5774 1.2995 34 1 9.3483 4.5719 1.3005 35 1 10.5398 2.5300 0.5470 36 1 6.8111 -1.5731 -0.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = 106.869598 kcal Electronic energy + Delta-G solvation = -21305.809866 eV Core-core repulsion = 18144.252695 eV Total energy + Delta-G solvation = -3161.557171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24864 -39.56885 -36.92455 -36.05442 -35.04030 -34.20103 -32.30991 -32.18700 -30.83297 -28.49007 -27.50305 -25.45880 -23.48695 -22.76930 -20.79264 -19.63149 -19.05791 -19.00576 -17.96113 -17.61669 -16.48384 -16.42216 -16.27726 -15.61851 -15.55750 -15.03897 -14.83346 -14.63140 -14.36113 -13.97911 -13.76971 -13.54831 -13.41133 -12.91492 -12.72510 -12.66885 -12.53647 -12.32304 -11.73948 -11.58316 -11.38452 -11.14391 -11.06579 -10.88020 -10.81325 -10.55150 -9.88755 -9.08034 -8.80329 -8.04179 -6.41004 0.91291 1.25070 1.40870 1.51675 1.55117 1.73979 1.87448 1.92300 1.97966 2.15758 2.27395 2.38196 3.00307 3.40759 3.47814 3.82341 3.98579 4.05935 4.10290 4.28525 4.42436 4.66319 4.73940 4.75537 4.89451 4.91270 4.96397 5.05689 5.08124 5.18629 5.20545 5.31266 5.69082 5.86151 5.92873 6.16694 6.37277 6.66183 6.73802 6.74556 6.84228 7.09269 7.66375 8.34979 8.58172 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.006363 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.997464 B = 4399.054950 C = 6170.949073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.216 4.216 3 C 0.012 3.988 4 C -0.079 4.079 5 C 0.003 3.997 6 C -0.221 4.221 7 C -0.189 4.189 8 C 0.466 3.534 9 O -0.454 6.454 10 N -0.655 5.655 11 C 0.348 3.652 12 C -0.348 4.348 13 C -0.034 4.034 14 C -0.331 4.331 15 C 0.237 3.763 16 C -0.465 4.465 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.689 5.689 20 Si 0.974 3.026 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.270 1.270 24 N -0.505 5.505 25 H 0.252 0.748 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.249 0.751 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 4.774 3.256 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.216 4.216 3 C -0.025 4.025 4 C -0.101 4.101 5 C -0.034 4.034 6 C -0.221 4.221 7 C -0.206 4.206 8 C 0.249 3.751 9 O -0.320 6.320 10 N -0.306 5.306 11 C 0.109 3.891 12 C -0.374 4.374 13 C -0.058 4.058 14 C -0.354 4.354 15 C 0.111 3.889 16 C -0.496 4.496 17 H 0.103 0.897 18 C -0.213 4.213 19 N -0.308 5.308 20 Si 0.795 3.205 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.195 1.195 24 N -0.225 5.225 25 H 0.268 0.732 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.254 0.746 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.360 3.127 2.671 13.979 hybrid contribution 0.771 0.643 0.144 1.015 sum -12.589 3.771 2.816 13.440 Atomic orbital electron populations 1.25662 0.96488 0.98615 0.99675 1.23027 0.94356 1.02355 1.01845 1.18261 0.85214 0.95532 1.03469 1.21229 0.90350 0.99629 0.98847 1.18667 1.03163 0.87878 0.93702 1.23261 1.01240 0.95711 1.01933 1.25699 0.99235 0.97400 0.98251 1.21462 0.90537 0.83934 0.79148 1.91145 1.68982 1.33081 1.38793 1.43749 1.03484 1.14308 1.69012 1.19212 0.85170 0.91620 0.93099 1.20956 0.94935 0.99498 1.21972 1.21019 0.93691 0.96753 0.94308 1.21810 0.99179 0.97055 1.17314 1.18895 0.87821 0.92965 0.89221 1.19921 0.94476 0.96852 1.38380 0.89737 1.27005 0.95819 1.02947 0.95570 1.70515 1.06058 1.28691 1.25532 0.85281 0.79597 0.77315 0.78260 1.17917 1.19540 1.19545 1.68684 1.08571 1.23803 1.21426 0.73217 0.89807 0.89531 0.87061 0.86442 0.90003 0.73503 0.74597 0.85463 0.84559 0.87782 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 19.25 74.32 1.43 -2.01 16 2 C -0.22 -5.10 12.23 31.13 0.38 -4.72 16 3 C 0.01 0.35 4.53 28.79 0.13 0.48 16 4 C -0.08 -2.26 2.24 -11.54 -0.03 -2.29 16 5 C 0.00 0.06 5.06 28.79 0.15 0.21 16 6 C -0.22 -5.48 11.13 31.13 0.35 -5.14 16 7 C -0.19 -4.00 17.93 74.32 1.33 -2.67 16 8 C 0.47 19.04 7.10 87.66 0.62 19.66 16 9 O -0.45 -23.12 11.69 -3.03 -0.04 -23.15 16 10 N -0.65 -26.71 4.83 -308.36 -1.49 -28.20 16 11 C 0.35 17.38 7.43 133.25 0.99 18.37 16 12 C -0.35 -15.38 9.95 22.72 0.23 -15.16 16 13 C -0.03 -1.49 10.15 22.39 0.23 -1.27 16 14 C -0.33 -17.03 9.83 22.87 0.22 -16.80 16 15 C 0.24 13.87 6.55 40.19 0.26 14.13 16 16 C -0.47 -26.80 9.14 23.47 0.21 -26.59 16 17 H 0.08 4.58 7.85 -2.91 -0.02 4.56 16 18 C 0.01 0.66 5.50 85.29 0.47 1.13 16 19 N -0.69 -39.54 8.99 21.84 0.20 -39.35 16 20 Si 0.97 40.91 29.56 68.60 2.03 42.94 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 N -0.51 -29.45 5.74 -186.36 -1.07 -30.52 16 25 H 0.25 2.35 7.80 -4.41 -0.03 2.31 16 26 H 0.08 2.63 7.96 -2.39 -0.02 2.61 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.12 2.31 7.23 -2.39 -0.02 2.30 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.25 3.31 7.80 -4.42 -0.03 3.27 16 32 H 0.41 13.69 5.46 -92.71 -0.51 13.18 16 33 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.27 14.54 8.29 -92.71 -0.77 13.77 16 Total: -1.00 -74.45 321.16 7.20 -67.25 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.59 Total: 33.68 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 6.98 Total: -22.65 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -2.36 Total: -98.06 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.15 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -74.45 7.20 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.122 kcal (2) G-P(sol) polarization free energy of solvation -74.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds