Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27561 * 126.42006 * 2 1 4 4 N 1.39149 * 113.16929 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.44088 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.31280 * 180.27307 * 5 4 3 7 7 C 1.52578 * 109.39305 * 60.51679 * 5 4 3 8 8 C 1.52571 * 110.84369 * 169.22283 * 7 5 4 9 9 C 1.53096 * 109.96343 * 70.48521 * 8 7 5 10 10 S 1.81744 * 108.94652 * 297.17246 * 9 8 7 11 11 C 1.53102 * 109.39046 * 300.02170 * 5 4 3 12 12 C 1.34954 * 111.11711 * 0.26461 * 4 3 2 13 13 O 1.21301 * 127.49557 * 179.71476 * 12 4 3 14 14 C 1.51443 * 126.41607 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.61009 * 61.51369 * 14 2 1 16 16 C 1.53005 * 110.60671 * 298.70813 * 14 2 1 17 17 C 1.50698 * 109.46967 * 175.00185 * 16 14 2 18 18 H 1.07998 * 120.00539 * 359.97438 * 17 16 14 19 19 C 1.37885 * 120.00049 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99601 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00151 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46744 * 60.00394 * 21 19 17 23 23 H 1.48500 * 109.46993 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47471 * 300.00429 * 21 19 17 25 25 H 1.08999 * 109.47273 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47148 * 120.02923 * 1 2 3 27 27 H 1.09001 * 109.47081 * 240.02649 * 1 2 3 28 28 H 1.09000 * 109.22474 * 289.49979 * 7 5 4 29 29 H 1.08999 * 109.22550 * 48.89833 * 7 5 4 30 30 H 1.09002 * 109.27876 * 310.39812 * 8 7 5 31 31 H 1.09004 * 109.49183 * 190.70184 * 8 7 5 32 32 H 1.09002 * 109.57599 * 177.29975 * 9 8 7 33 33 H 1.09001 * 109.57403 * 57.04170 * 9 8 7 34 34 H 1.09003 * 109.57341 * 63.36630 * 11 5 4 35 35 H 1.08998 * 109.57507 * 302.98694 * 11 5 4 36 36 H 1.09006 * 109.47000 * 294.99408 * 16 14 2 37 37 H 1.09002 * 109.47592 * 54.99662 * 16 14 2 38 38 H 0.96995 * 119.99525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7075 0.0006 5 6 4.7022 1.6936 0.0012 6 1 5.6612 1.1755 -0.0033 7 6 4.5995 2.5583 1.2542 8 6 5.8505 3.4144 1.4270 9 6 5.8882 4.5071 0.3554 10 16 5.9955 3.7249 -1.2816 11 6 4.5923 2.5703 -1.2491 12 6 3.8035 -0.6293 -0.0048 13 8 4.8579 -1.2290 -0.0107 14 6 2.4060 -1.2187 0.0005 15 1 2.2422 -1.8167 -0.8959 16 6 2.1721 -2.0599 1.2570 17 6 2.9870 -3.3248 1.1736 18 1 3.6092 -3.5105 0.3106 19 6 2.9383 -4.2452 2.1991 20 7 2.1803 -4.0193 3.2499 21 14 3.9478 -5.8134 2.0954 22 1 5.3886 -5.4686 1.9909 23 1 3.7209 -6.6298 3.3149 24 1 3.5363 -6.5888 0.8976 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5143 -0.8897 27 1 -0.3633 -0.5134 0.8902 28 1 3.7296 3.2097 1.1704 29 1 4.4831 1.9145 2.1260 30 1 6.7342 2.7835 1.3319 31 1 5.8417 3.8760 2.4145 32 1 6.7585 5.1440 0.5137 33 1 4.9805 5.1078 0.4143 34 1 3.6582 3.1315 -1.2207 35 1 4.6158 1.9416 -2.1392 36 1 2.4737 -1.4909 2.1365 37 1 1.1147 -2.3132 1.3331 38 1 2.1458 -4.6670 3.9711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887298597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 2.353188 kcal Electronic energy + Delta-G solvation = -20406.136411 eV Core-core repulsion = 17375.491020 eV Total energy + Delta-G solvation = -3030.645391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85893 -37.14349 -36.82871 -33.83679 -32.80410 -30.74289 -30.39344 -27.75122 -27.30175 -25.93155 -23.23354 -22.16819 -21.14327 -20.09237 -18.75811 -17.31973 -16.36613 -15.91393 -15.48658 -15.27937 -14.79047 -14.41839 -14.38898 -14.04513 -13.56893 -13.33176 -13.30173 -13.10622 -12.95360 -12.30037 -12.23524 -11.67623 -11.59499 -11.56118 -11.41963 -11.40359 -11.07529 -10.99249 -10.85852 -10.61747 -10.29673 -9.90979 -9.56610 -9.38411 -8.84290 -8.39132 -8.25556 -7.81014 -6.05345 -4.06760 1.55084 2.13535 2.22568 2.88232 3.19390 3.35607 3.38612 3.44744 4.26244 4.44776 4.54489 4.59912 4.64682 4.77827 4.84558 5.03720 5.22997 5.26965 5.32538 5.42678 5.48584 5.54235 5.66793 5.72601 5.76161 5.84226 5.93289 5.99749 6.09171 6.12305 6.36217 6.61557 6.81422 7.38422 7.43499 7.92690 8.13902 8.26084 8.49227 8.97975 9.57819 11.05840 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.004709 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.126496 B = 5945.262438 C = 6538.364062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.103 3.897 3 N -0.258 5.258 4 N -0.480 5.480 5 C 0.176 3.824 6 H 0.109 0.891 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.083 4.083 10 S -0.259 6.259 11 C -0.085 4.085 12 C 0.511 3.489 13 O -0.485 6.485 14 C -0.131 4.131 15 H 0.121 0.879 16 C 0.057 3.943 17 C -0.516 4.516 18 H 0.063 0.937 19 C 0.060 3.940 20 N -0.898 5.898 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.019 0.981 37 H 0.038 0.962 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 15.869 -5.846 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 N -0.065 5.065 4 N -0.301 5.301 5 C 0.072 3.928 6 H 0.127 0.873 7 C -0.174 4.174 8 C -0.159 4.159 9 C -0.231 4.231 10 S -0.033 6.033 11 C -0.234 4.234 12 C 0.298 3.702 13 O -0.355 6.355 14 C -0.155 4.155 15 H 0.139 0.861 16 C 0.018 3.982 17 C -0.555 4.555 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.537 5.537 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.556 16.723 -6.520 18.017 hybrid contribution -0.199 -1.835 1.000 2.099 sum 1.357 14.888 -5.520 15.936 Atomic orbital electron populations 1.20311 0.85354 1.03444 1.04217 1.25449 0.97284 0.91870 0.94369 1.74437 0.88991 1.26947 1.16139 1.49941 1.02447 1.06016 1.71720 1.21169 0.89319 0.88651 0.93705 0.87292 1.21846 0.98536 0.98865 0.98183 1.21737 0.99024 0.96532 0.98576 1.23500 1.05967 1.00003 0.93632 1.86890 1.42753 1.50021 1.23595 1.23824 0.98977 0.98902 1.01677 1.21497 0.92098 0.81786 0.74771 1.90721 1.31191 1.65787 1.47753 1.22070 0.90542 0.96456 1.06419 0.86128 1.18882 0.98515 0.93175 0.87586 1.21135 1.26334 1.02865 1.05124 0.91891 1.24949 0.95450 0.98528 0.95175 1.69940 1.39330 1.36232 1.08205 0.86591 0.80981 0.82852 0.77276 1.20106 1.21324 1.20115 0.90704 0.89699 0.88943 0.90685 0.90308 0.90288 0.90211 0.87654 0.89669 0.88689 0.87709 0.96309 0.94377 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.46 36.01 0.38 -0.50 16 2 C 0.10 1.67 6.93 -78.73 -0.55 1.13 16 3 N -0.26 -4.29 11.78 35.52 0.42 -3.88 16 4 N -0.48 -8.60 3.23 -53.57 -0.17 -8.77 16 5 C 0.18 2.64 2.72 -68.10 -0.19 2.45 16 6 H 0.11 1.79 7.59 -51.93 -0.39 1.40 16 7 C -0.14 -1.75 5.09 -27.17 -0.14 -1.89 16 8 C -0.12 -1.21 5.76 -26.90 -0.15 -1.36 16 9 C -0.08 -0.77 6.45 37.21 0.24 -0.53 16 10 S -0.26 -3.07 22.33 -107.50 -2.40 -5.47 16 11 C -0.08 -1.10 5.94 37.21 0.22 -0.87 16 12 C 0.51 11.04 7.62 -10.43 -0.08 10.96 16 13 O -0.48 -12.12 16.80 5.54 0.09 -12.03 16 14 C -0.13 -2.65 2.94 -92.08 -0.27 -2.92 16 15 H 0.12 2.33 8.14 -51.93 -0.42 1.91 16 16 C 0.06 1.39 4.50 -27.88 -0.13 1.27 16 17 C -0.52 -14.48 8.46 -34.44 -0.29 -14.77 16 18 H 0.06 1.80 7.44 -52.49 -0.39 1.41 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.11 8.03 -51.93 -0.42 0.70 16 28 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -32.06 327.54 -8.28 -40.34 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.82 Total: -1.17 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.05 Total: -5.42 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.98 Total: -38.27 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.40 Total: -5.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.06 -8.28 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887298597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.694 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds