Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27561 * 126.42006 * 2 1 4 4 N 1.39149 * 113.16929 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.44088 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.31280 * 180.27307 * 5 4 3 7 7 C 1.52578 * 109.39305 * 60.51679 * 5 4 3 8 8 C 1.52571 * 110.84369 * 169.22283 * 7 5 4 9 9 C 1.53096 * 109.96343 * 70.48521 * 8 7 5 10 10 S 1.81744 * 108.94652 * 297.17246 * 9 8 7 11 11 C 1.53102 * 109.39046 * 300.02170 * 5 4 3 12 12 C 1.34954 * 111.11711 * 0.26461 * 4 3 2 13 13 O 1.21301 * 127.49557 * 179.71476 * 12 4 3 14 14 C 1.51443 * 126.41607 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.61009 * 61.51369 * 14 2 1 16 16 C 1.53005 * 110.60671 * 298.70813 * 14 2 1 17 17 C 1.50698 * 109.46967 * 175.00185 * 16 14 2 18 18 H 1.07998 * 120.00539 * 359.97438 * 17 16 14 19 19 C 1.37885 * 120.00049 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99601 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00151 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46744 * 60.00394 * 21 19 17 23 23 H 1.48500 * 109.46993 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47471 * 300.00429 * 21 19 17 25 25 H 1.08999 * 109.47273 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47148 * 120.02923 * 1 2 3 27 27 H 1.09001 * 109.47081 * 240.02649 * 1 2 3 28 28 H 1.09000 * 109.22474 * 289.49979 * 7 5 4 29 29 H 1.08999 * 109.22550 * 48.89833 * 7 5 4 30 30 H 1.09002 * 109.27876 * 310.39812 * 8 7 5 31 31 H 1.09004 * 109.49183 * 190.70184 * 8 7 5 32 32 H 1.09002 * 109.57599 * 177.29975 * 9 8 7 33 33 H 1.09001 * 109.57403 * 57.04170 * 9 8 7 34 34 H 1.09003 * 109.57341 * 63.36630 * 11 5 4 35 35 H 1.08998 * 109.57507 * 302.98694 * 11 5 4 36 36 H 1.09006 * 109.47000 * 294.99408 * 16 14 2 37 37 H 1.09002 * 109.47592 * 54.99662 * 16 14 2 38 38 H 0.96995 * 119.99525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7075 0.0006 5 6 4.7022 1.6936 0.0012 6 1 5.6612 1.1755 -0.0033 7 6 4.5995 2.5583 1.2542 8 6 5.8505 3.4144 1.4270 9 6 5.8882 4.5071 0.3554 10 16 5.9955 3.7249 -1.2816 11 6 4.5923 2.5703 -1.2491 12 6 3.8035 -0.6293 -0.0048 13 8 4.8579 -1.2290 -0.0107 14 6 2.4060 -1.2187 0.0005 15 1 2.2422 -1.8167 -0.8959 16 6 2.1721 -2.0599 1.2570 17 6 2.9870 -3.3248 1.1736 18 1 3.6092 -3.5105 0.3106 19 6 2.9383 -4.2452 2.1991 20 7 2.1803 -4.0193 3.2499 21 14 3.9478 -5.8134 2.0954 22 1 5.3886 -5.4686 1.9909 23 1 3.7209 -6.6298 3.3149 24 1 3.5363 -6.5888 0.8976 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5143 -0.8897 27 1 -0.3633 -0.5134 0.8902 28 1 3.7296 3.2097 1.1704 29 1 4.4831 1.9145 2.1260 30 1 6.7342 2.7835 1.3319 31 1 5.8417 3.8760 2.4145 32 1 6.7585 5.1440 0.5137 33 1 4.9805 5.1078 0.4143 34 1 3.6582 3.1315 -1.2207 35 1 4.6158 1.9416 -2.1392 36 1 2.4737 -1.4909 2.1365 37 1 1.1147 -2.3132 1.3331 38 1 2.1458 -4.6670 3.9711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887298597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -16.941011 kcal Electronic energy + Delta-G solvation = -20406.973071 eV Core-core repulsion = 17375.491020 eV Total energy + Delta-G solvation = -3031.482051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37668 -38.51694 -38.27475 -35.60196 -34.31786 -32.30004 -31.77549 -28.94101 -28.35254 -27.76068 -24.79590 -23.60711 -22.25097 -21.68154 -20.22154 -18.66387 -18.29774 -17.18824 -17.06688 -16.57793 -16.42022 -15.88037 -15.69672 -15.43702 -14.68483 -14.56652 -14.43072 -14.32889 -14.12125 -14.06201 -13.54693 -13.33779 -13.21153 -12.84921 -12.69856 -12.63067 -12.59642 -12.51923 -12.17019 -12.03679 -12.01458 -11.59012 -11.24171 -10.86295 -10.67369 -10.44222 -9.67093 -8.78948 -8.24290 -6.31897 0.57572 0.67148 1.22009 1.36303 1.39515 1.47439 1.52011 1.72463 2.38931 2.91444 3.10909 3.24670 3.46439 3.55975 3.72942 3.87152 3.97835 3.99124 4.22938 4.30897 4.41620 4.46727 4.57743 4.64733 4.69701 4.81218 4.87793 4.90305 4.95063 5.06163 5.13182 5.24519 5.32305 5.36591 5.56559 5.73078 6.13034 6.67086 6.77570 6.87723 7.35868 8.86594 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.004709 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.126496 B = 5945.262438 C = 6538.364062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.118 3.882 3 N -0.256 5.256 4 N -0.475 5.475 5 C 0.168 3.832 6 H 0.087 0.913 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.072 4.072 10 S -0.276 6.276 11 C -0.073 4.073 12 C 0.496 3.504 13 O -0.533 6.533 14 C -0.135 4.135 15 H 0.130 0.870 16 C 0.069 3.931 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.953 3.047 22 H -0.284 1.284 23 H -0.276 1.276 24 H -0.262 1.262 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.094 0.906 36 H -0.015 1.015 37 H 0.041 0.959 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 17.424 -6.170 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.062 5.062 4 N -0.294 5.294 5 C 0.065 3.935 6 H 0.105 0.895 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.220 4.220 10 S -0.050 6.050 11 C -0.222 4.222 12 C 0.284 3.716 13 O -0.407 6.407 14 C -0.159 4.159 15 H 0.147 0.853 16 C 0.031 3.969 17 C -0.572 4.572 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.565 5.565 21 Si 0.778 3.222 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.187 1.187 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.003 0.997 37 H 0.059 0.941 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.710 18.324 -6.855 19.577 hybrid contribution 0.054 -2.267 1.121 2.530 sum 0.764 16.057 -5.734 17.067 Atomic orbital electron populations 1.20560 0.81620 1.05618 1.05365 1.26015 0.99008 0.89338 0.93031 1.74515 0.88038 1.26548 1.17090 1.50060 1.03728 1.05357 1.70297 1.21409 0.87493 0.88456 0.96150 0.89489 1.21793 1.00589 0.98527 0.95806 1.21710 0.96920 0.96335 1.00341 1.23602 1.07919 0.99541 0.90896 1.86994 1.42271 1.49614 1.26127 1.23613 1.00012 0.98708 0.99874 1.21763 0.91974 0.83253 0.74583 1.90672 1.32692 1.67107 1.50277 1.21955 0.91334 0.97878 1.04721 0.85258 1.18590 0.97842 0.92206 0.88262 1.21434 1.26523 1.04391 1.04841 0.93163 1.25713 0.96486 1.01567 0.94914 1.70023 1.40432 1.37322 1.08734 0.85683 0.78783 0.79555 0.78151 1.21005 1.20087 1.18664 0.88036 0.87066 0.89006 0.89725 0.92707 0.91196 0.87734 0.85283 0.88048 0.87870 0.88731 0.99711 0.94088 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.46 71.24 0.75 -0.77 16 2 C 0.12 3.71 6.93 46.83 0.32 4.03 16 3 N -0.26 -8.24 11.78 -40.85 -0.48 -8.72 16 4 N -0.47 -17.28 3.23 -441.68 -1.43 -18.70 16 5 C 0.17 5.11 2.72 44.89 0.12 5.24 16 6 H 0.09 3.02 7.59 -2.39 -0.02 3.00 16 7 C -0.13 -3.24 5.09 30.31 0.15 -3.09 16 8 C -0.11 -2.09 5.76 30.48 0.18 -1.92 16 9 C -0.07 -1.13 6.45 72.01 0.46 -0.66 16 10 S -0.28 -6.18 22.33 -56.49 -1.26 -7.44 16 11 C -0.07 -1.85 5.94 72.02 0.43 -1.42 16 12 C 0.50 22.25 7.62 87.94 0.67 22.92 16 13 O -0.53 -28.14 16.80 -3.09 -0.05 -28.19 16 14 C -0.14 -5.54 2.94 -11.74 -0.03 -5.57 16 15 H 0.13 5.03 8.14 -2.39 -0.02 5.01 16 16 C 0.07 3.49 4.50 29.85 0.13 3.62 16 17 C -0.53 -30.70 8.46 25.60 0.22 -30.48 16 18 H 0.05 2.96 7.44 -2.91 -0.02 2.94 16 19 C 0.01 0.68 5.46 84.66 0.46 1.14 16 20 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 21 Si 0.95 45.77 29.54 68.60 2.03 47.79 16 22 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 28 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H -0.02 -0.88 8.13 -2.38 -0.02 -0.90 16 37 H 0.04 2.02 8.00 -2.39 -0.02 2.00 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -71.55 327.54 3.99 -67.55 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.04 Total: 9.29 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 3.86 Total: -6.95 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.62 Total: -82.06 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -1.26 Total: -7.44 kcal Total: -71.55 3.99 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887298597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.613 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds