Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27567 * 126.41515 * 2 1 4 4 N 1.39148 * 113.16438 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.43784 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.30692 * 180.27111 * 5 4 3 7 7 C 1.52577 * 109.39405 * 300.02386 * 5 4 3 8 8 C 1.52581 * 110.69350 * 190.80302 * 7 5 4 9 9 C 1.53101 * 109.95693 * 289.34546 * 8 7 5 10 10 S 1.81747 * 108.83898 * 63.02605 * 9 8 7 11 11 C 1.53019 * 109.32646 * 60.53577 * 5 4 3 12 12 C 1.34953 * 111.12111 * 0.26095 * 4 3 2 13 13 O 1.21304 * 127.50081 * 179.70828 * 12 4 3 14 14 C 1.51442 * 126.41774 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.60395 * 298.70295 * 14 2 1 16 16 C 1.52996 * 110.60634 * 61.51595 * 14 2 1 17 17 C 1.50705 * 109.47138 * 185.00018 * 16 14 2 18 18 H 1.07998 * 119.99346 * 0.02562 * 17 16 14 19 19 C 1.37872 * 119.99927 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00655 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99727 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46933 * 120.00253 * 21 19 17 24 24 H 1.48499 * 109.47468 * 240.00320 * 21 19 17 25 25 H 1.09005 * 109.47174 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47510 * 120.02703 * 1 2 3 27 27 H 1.09003 * 109.46845 * 240.02674 * 1 2 3 28 28 H 1.09002 * 109.22650 * 70.50213 * 7 5 4 29 29 H 1.09000 * 109.22513 * 311.09950 * 7 5 4 30 30 H 1.09003 * 109.38907 * 49.49655 * 8 7 5 31 31 H 1.08997 * 109.39152 * 169.29775 * 8 7 5 32 32 H 1.08995 * 109.57507 * 182.82620 * 9 8 7 33 33 H 1.08997 * 109.57554 * 303.09125 * 9 8 7 34 34 H 1.08996 * 109.59306 * 57.00218 * 11 5 4 35 35 H 1.08999 * 109.69884 * 296.65515 * 11 5 4 36 36 H 1.09001 * 109.47731 * 305.00138 * 16 14 2 37 37 H 1.08998 * 109.47214 * 65.00105 * 16 14 2 38 38 H 0.96991 * 120.00469 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6938 0.0002 6 1 5.6611 1.1757 -0.0041 7 6 4.5923 2.5665 -1.2466 8 6 5.8442 3.4218 -1.4179 9 6 5.8858 4.5090 -0.3408 10 16 6.0017 3.7152 1.2901 11 6 4.5982 2.5608 1.2567 12 6 3.8035 -0.6292 -0.0047 13 8 4.8580 -1.2289 -0.0107 14 6 2.4061 -1.2187 0.0005 15 1 2.2395 -1.8178 0.8957 16 6 2.1762 -2.0580 -1.2578 17 6 2.9908 -3.3231 -1.1736 18 1 3.6102 -3.5098 -0.3088 19 6 2.9445 -4.2424 -2.2001 20 7 2.1899 -4.0152 -3.2529 21 14 3.9548 -5.8102 -2.0960 22 1 4.7135 -5.8263 -0.8195 23 1 3.0500 -6.9865 -2.1484 24 1 4.9037 -5.8643 -3.2370 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8897 27 1 -0.3633 -0.5134 0.8903 28 1 3.7229 3.2174 -1.1537 29 1 4.4711 1.9284 -2.1219 30 1 6.7286 2.7907 -1.3295 31 1 5.8307 3.8900 -2.4021 32 1 6.7554 5.1468 -0.4990 33 1 4.9778 5.1097 -0.3930 34 1 4.6264 1.9259 2.1422 35 1 3.6640 3.1223 1.2395 36 1 1.1190 -2.3113 -1.3376 37 1 2.4803 -1.4878 -2.1355 38 1 2.1570 -4.6621 -3.9748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887298599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = 2.403145 kcal Electronic energy + Delta-G solvation = -20410.195392 eV Core-core repulsion = 17379.552167 eV Total energy + Delta-G solvation = -3030.643225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86014 -37.14919 -36.82434 -33.83910 -32.80427 -30.74381 -30.39646 -27.74942 -27.30315 -25.92805 -23.22972 -22.16279 -21.14585 -20.09450 -18.75685 -17.32265 -16.37420 -15.91216 -15.48334 -15.28088 -14.78882 -14.41133 -14.38815 -14.05459 -13.56988 -13.33023 -13.30019 -13.10368 -12.95069 -12.31032 -12.23650 -11.67439 -11.59852 -11.55561 -11.41886 -11.40445 -11.07162 -10.99266 -10.87940 -10.61369 -10.28313 -9.90642 -9.56565 -9.36721 -8.83507 -8.40050 -8.25376 -7.81036 -6.05656 -4.06915 1.55044 2.13683 2.22589 2.88347 3.19973 3.32107 3.39771 3.47460 4.26421 4.44782 4.54387 4.60005 4.64837 4.77814 4.84504 5.03553 5.22916 5.27137 5.32459 5.42697 5.48584 5.54312 5.66920 5.72608 5.76081 5.84184 5.93421 5.99669 6.09030 6.12201 6.36235 6.61603 6.81512 7.38405 7.43277 7.92756 8.14027 8.25899 8.49593 8.98457 9.57852 11.05633 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.004713 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.131440 B = 5939.494124 C = 6534.182954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.103 3.897 3 N -0.258 5.258 4 N -0.480 5.480 5 C 0.176 3.824 6 H 0.109 0.891 7 C -0.136 4.136 8 C -0.119 4.119 9 C -0.083 4.083 10 S -0.259 6.259 11 C -0.085 4.085 12 C 0.511 3.489 13 O -0.484 6.484 14 C -0.131 4.131 15 H 0.122 0.878 16 C 0.055 3.945 17 C -0.514 4.514 18 H 0.064 0.936 19 C 0.059 3.941 20 N -0.898 5.898 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 15.884 5.934 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 N -0.065 5.065 4 N -0.302 5.302 5 C 0.072 3.928 6 H 0.127 0.873 7 C -0.174 4.174 8 C -0.159 4.159 9 C -0.231 4.231 10 S -0.033 6.033 11 C -0.234 4.234 12 C 0.299 3.701 13 O -0.354 6.354 14 C -0.155 4.155 15 H 0.140 0.860 16 C 0.017 3.983 17 C -0.553 4.553 18 H 0.082 0.918 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.722 3.278 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.553 16.735 6.612 18.061 hybrid contribution -0.218 -1.829 -1.034 2.112 sum 1.336 14.907 5.578 15.972 Atomic orbital electron populations 1.20311 0.85361 1.03444 1.04210 1.25449 0.97281 0.91874 0.94381 1.74439 0.88998 1.26944 1.16130 1.49951 1.02446 1.06022 1.71735 1.21164 0.89331 0.88665 0.93689 0.87282 1.21853 0.98514 0.98820 0.98235 1.21745 0.99013 0.96594 0.98531 1.23503 1.05962 0.99973 0.93667 1.86893 1.42588 1.49631 1.24170 1.23808 0.98974 0.98952 1.01624 1.21488 0.92087 0.81779 0.74779 1.90723 1.31182 1.65778 1.47711 1.22069 0.90571 0.96460 1.06417 0.86041 1.18902 0.98555 0.93261 0.87587 1.21211 1.26286 1.02780 1.04975 0.91774 1.24948 0.95473 0.98551 0.95186 1.69954 1.39560 1.36108 1.08097 0.86479 0.80090 0.82897 0.78301 1.19527 1.21000 1.21028 0.90707 0.88952 0.89699 0.90662 0.90311 0.90254 0.90241 0.87656 0.89658 0.87709 0.88697 0.94393 0.96311 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.47 36.01 0.38 -0.50 16 2 C 0.10 1.67 6.93 -78.72 -0.55 1.13 16 3 N -0.26 -4.29 11.78 35.53 0.42 -3.87 16 4 N -0.48 -8.59 3.23 -53.60 -0.17 -8.77 16 5 C 0.18 2.63 2.71 -68.14 -0.18 2.45 16 6 H 0.11 1.79 7.58 -51.93 -0.39 1.40 16 7 C -0.14 -1.75 5.10 -27.16 -0.14 -1.89 16 8 C -0.12 -1.21 5.75 -26.89 -0.15 -1.36 16 9 C -0.08 -0.77 6.46 37.21 0.24 -0.53 16 10 S -0.26 -3.07 22.33 -107.50 -2.40 -5.47 16 11 C -0.08 -1.09 5.95 37.17 0.22 -0.87 16 12 C 0.51 11.05 7.59 -10.43 -0.08 10.97 16 13 O -0.48 -12.11 16.77 5.54 0.09 -12.02 16 14 C -0.13 -2.65 2.98 -92.08 -0.27 -2.93 16 15 H 0.12 2.34 8.14 -51.93 -0.42 1.92 16 16 C 0.06 1.35 4.48 -27.88 -0.12 1.23 16 17 C -0.51 -14.42 8.43 -34.44 -0.29 -14.71 16 18 H 0.06 1.84 7.43 -52.49 -0.39 1.45 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 37 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -32.13 327.45 -8.28 -40.41 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.82 Total: -1.24 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.05 Total: -5.42 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.98 Total: -38.28 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.40 Total: -5.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.13 -8.28 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887298599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.813 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds