Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27567 * 126.41515 * 2 1 4 4 N 1.39148 * 113.16438 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.43784 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.30692 * 180.27111 * 5 4 3 7 7 C 1.52577 * 109.39405 * 300.02386 * 5 4 3 8 8 C 1.52581 * 110.69350 * 190.80302 * 7 5 4 9 9 C 1.53101 * 109.95693 * 289.34546 * 8 7 5 10 10 S 1.81747 * 108.83898 * 63.02605 * 9 8 7 11 11 C 1.53019 * 109.32646 * 60.53577 * 5 4 3 12 12 C 1.34953 * 111.12111 * 0.26095 * 4 3 2 13 13 O 1.21304 * 127.50081 * 179.70828 * 12 4 3 14 14 C 1.51442 * 126.41774 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.60395 * 298.70295 * 14 2 1 16 16 C 1.52996 * 110.60634 * 61.51595 * 14 2 1 17 17 C 1.50705 * 109.47138 * 185.00018 * 16 14 2 18 18 H 1.07998 * 119.99346 * 0.02562 * 17 16 14 19 19 C 1.37872 * 119.99927 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00655 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99727 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47308 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46933 * 120.00253 * 21 19 17 24 24 H 1.48499 * 109.47468 * 240.00320 * 21 19 17 25 25 H 1.09005 * 109.47174 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47510 * 120.02703 * 1 2 3 27 27 H 1.09003 * 109.46845 * 240.02674 * 1 2 3 28 28 H 1.09002 * 109.22650 * 70.50213 * 7 5 4 29 29 H 1.09000 * 109.22513 * 311.09950 * 7 5 4 30 30 H 1.09003 * 109.38907 * 49.49655 * 8 7 5 31 31 H 1.08997 * 109.39152 * 169.29775 * 8 7 5 32 32 H 1.08995 * 109.57507 * 182.82620 * 9 8 7 33 33 H 1.08997 * 109.57554 * 303.09125 * 9 8 7 34 34 H 1.08996 * 109.59306 * 57.00218 * 11 5 4 35 35 H 1.08999 * 109.69884 * 296.65515 * 11 5 4 36 36 H 1.09001 * 109.47731 * 305.00138 * 16 14 2 37 37 H 1.08998 * 109.47214 * 65.00105 * 16 14 2 38 38 H 0.96991 * 120.00469 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6938 0.0002 6 1 5.6611 1.1757 -0.0041 7 6 4.5923 2.5665 -1.2466 8 6 5.8442 3.4218 -1.4179 9 6 5.8858 4.5090 -0.3408 10 16 6.0017 3.7152 1.2901 11 6 4.5982 2.5608 1.2567 12 6 3.8035 -0.6292 -0.0047 13 8 4.8580 -1.2289 -0.0107 14 6 2.4061 -1.2187 0.0005 15 1 2.2395 -1.8178 0.8957 16 6 2.1762 -2.0580 -1.2578 17 6 2.9908 -3.3231 -1.1736 18 1 3.6102 -3.5098 -0.3088 19 6 2.9445 -4.2424 -2.2001 20 7 2.1899 -4.0152 -3.2529 21 14 3.9548 -5.8102 -2.0960 22 1 4.7135 -5.8263 -0.8195 23 1 3.0500 -6.9865 -2.1484 24 1 4.9037 -5.8643 -3.2370 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8897 27 1 -0.3633 -0.5134 0.8903 28 1 3.7229 3.2174 -1.1537 29 1 4.4711 1.9284 -2.1219 30 1 6.7286 2.7907 -1.3295 31 1 5.8307 3.8900 -2.4021 32 1 6.7554 5.1468 -0.4990 33 1 4.9778 5.1097 -0.3930 34 1 4.6264 1.9259 2.1422 35 1 3.6640 3.1223 1.2395 36 1 1.1190 -2.3113 -1.3376 37 1 2.4803 -1.4878 -2.1355 38 1 2.1570 -4.6621 -3.9748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887298599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = -16.956152 kcal Electronic energy + Delta-G solvation = -20411.034874 eV Core-core repulsion = 17379.552167 eV Total energy + Delta-G solvation = -3031.482707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37730 -38.51243 -38.27907 -35.60508 -34.31720 -32.30319 -31.77563 -28.93869 -28.35341 -27.75852 -24.79112 -23.60155 -22.25149 -21.68399 -20.21858 -18.67066 -18.30306 -17.18588 -17.06656 -16.57501 -16.41584 -15.87990 -15.69954 -15.43899 -14.68917 -14.56672 -14.43225 -14.32557 -14.12216 -14.06345 -13.53774 -13.32770 -13.20886 -12.87542 -12.69824 -12.61426 -12.59977 -12.52324 -12.17397 -12.04645 -12.01790 -11.56509 -11.23569 -10.86034 -10.68115 -10.43879 -9.66829 -8.78893 -8.24726 -6.32173 0.57572 0.67456 1.22164 1.34894 1.37310 1.50464 1.52157 1.73073 2.38731 2.91555 3.10563 3.24890 3.46595 3.56257 3.73040 3.87128 3.98003 3.99406 4.22959 4.30841 4.41704 4.46920 4.57887 4.64829 4.69800 4.81330 4.87898 4.90334 4.95093 5.06268 5.13316 5.24621 5.32316 5.36348 5.56635 5.73192 6.12810 6.67382 6.77817 6.88070 7.35823 8.86596 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.004713 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.131440 B = 5939.494124 C = 6534.182954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.118 3.882 3 N -0.256 5.256 4 N -0.475 5.475 5 C 0.168 3.832 6 H 0.087 0.913 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.072 4.072 10 S -0.277 6.277 11 C -0.073 4.073 12 C 0.496 3.504 13 O -0.533 6.533 14 C -0.135 4.135 15 H 0.131 0.869 16 C 0.068 3.932 17 C -0.531 4.531 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.267 1.267 24 H -0.282 1.282 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.041 0.959 37 H -0.016 1.016 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 17.453 6.219 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.062 5.062 4 N -0.295 5.295 5 C 0.065 3.935 6 H 0.105 0.895 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.220 4.220 10 S -0.050 6.050 11 C -0.222 4.222 12 C 0.284 3.716 13 O -0.407 6.407 14 C -0.159 4.159 15 H 0.148 0.852 16 C 0.030 3.970 17 C -0.569 4.569 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.199 1.199 23 H -0.192 1.192 24 H -0.208 1.208 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.720 18.350 6.905 19.620 hybrid contribution 0.030 -2.268 -1.142 2.539 sum 0.751 16.083 5.763 17.101 Atomic orbital electron populations 1.20560 0.81626 1.05614 1.05362 1.26015 0.99006 0.89342 0.93045 1.74517 0.88047 1.26545 1.17079 1.50068 1.03725 1.05357 1.70311 1.21406 0.87505 0.88466 0.96130 0.89472 1.21799 1.00559 0.98477 0.95863 1.21717 0.96918 0.96399 1.00289 1.23606 1.07910 0.99506 0.90935 1.86998 1.42109 1.49246 1.26684 1.23597 1.00011 0.98773 0.99813 1.21756 0.91966 0.83251 0.74588 1.90673 1.32685 1.67101 1.50236 1.21959 0.91364 0.97879 1.04710 0.85162 1.18606 0.97859 0.92273 0.88283 1.21487 1.26483 1.04315 1.04646 0.93168 1.25710 0.96512 1.01581 0.94926 1.70031 1.40642 1.37264 1.08653 0.85568 0.78817 0.79812 0.77909 1.19873 1.19182 1.20841 0.88041 0.89020 0.87057 0.89703 0.92701 0.91155 0.87770 0.85289 0.88037 0.88740 0.87873 0.94119 0.99717 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.47 71.24 0.75 -0.77 16 2 C 0.12 3.70 6.93 46.83 0.32 4.03 16 3 N -0.26 -8.23 11.78 -40.84 -0.48 -8.71 16 4 N -0.47 -17.27 3.23 -441.79 -1.43 -18.69 16 5 C 0.17 5.11 2.71 44.86 0.12 5.23 16 6 H 0.09 3.02 7.58 -2.38 -0.02 3.00 16 7 C -0.13 -3.23 5.10 30.31 0.15 -3.08 16 8 C -0.11 -2.09 5.75 30.49 0.18 -1.92 16 9 C -0.07 -1.12 6.46 72.02 0.46 -0.66 16 10 S -0.28 -6.18 22.33 -56.49 -1.26 -7.44 16 11 C -0.07 -1.84 5.95 71.99 0.43 -1.42 16 12 C 0.50 22.26 7.59 87.94 0.67 22.93 16 13 O -0.53 -28.12 16.77 -3.10 -0.05 -28.18 16 14 C -0.14 -5.54 2.98 -11.74 -0.03 -5.58 16 15 H 0.13 5.06 8.14 -2.39 -0.02 5.04 16 16 C 0.07 3.43 4.48 29.85 0.13 3.56 16 17 C -0.53 -30.57 8.43 25.60 0.22 -30.36 16 18 H 0.05 2.98 7.43 -2.91 -0.02 2.95 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 21 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 22 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 25 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 2.00 8.02 -2.39 -0.02 1.98 16 37 H -0.02 -0.88 8.12 -2.39 -0.02 -0.90 16 38 H 0.27 14.80 8.31 -92.72 -0.77 14.03 16 Total: -1.00 -71.68 327.45 3.99 -67.69 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.04 Total: 9.07 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 3.86 Total: -6.92 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.62 Total: -82.10 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -1.26 Total: -7.44 kcal Total: -71.68 3.99 -67.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887298599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.733 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds