Wall clock time and date at job start Tue Mar 31 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47232 * 180.02562 * 16 14 13 18 18 S 1.76202 * 126.03713 * 269.69673 * 17 16 14 19 19 C 1.70981 * 90.28141 * 179.97438 * 18 17 16 20 20 C 1.50703 * 124.91418 * 180.02562 * 19 18 17 21 21 N 1.29021 * 110.16680 * 0.34300 * 19 18 17 22 22 C 1.31785 * 117.12646 * 359.72853 * 21 19 18 23 23 C 1.50696 * 122.75206 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 31 31 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 32 32 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 33 33 H 1.09005 * 109.46613 * 270.28618 * 20 19 18 34 34 H 1.08999 * 109.47345 * 30.28823 * 20 19 18 35 35 H 1.09000 * 109.46498 * 150.29145 * 20 19 18 36 36 H 1.08993 * 109.47357 * 270.00189 * 23 22 21 37 37 H 1.09001 * 109.47037 * 30.00055 * 23 22 21 38 38 H 1.09004 * 109.47582 * 149.99606 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 6 -1.3616 3.8850 2.5237 18 16 -1.7947 5.4971 1.9595 19 6 -3.4523 5.1347 2.1702 20 6 -4.5865 6.0836 1.8795 21 7 -3.5913 3.9335 2.6202 22 6 -2.4913 3.2361 2.8210 23 6 -2.5061 1.8227 3.3436 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 2.2719 2.1231 1.9979 31 1 0.0673 2.6129 3.4685 32 1 0.7277 4.1529 2.8680 33 1 -4.8105 6.6664 2.7730 34 1 -4.3001 6.7550 1.0700 35 1 -5.4691 5.5155 1.5855 36 1 -2.4601 1.8374 4.4324 37 1 -3.4235 1.3273 3.0254 38 1 -1.6457 1.2809 2.9507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:15 Heat of formation + Delta-G solvation = -12.239438 kcal Electronic energy + Delta-G solvation = -20076.988885 eV Core-core repulsion = 17045.710710 eV Total energy + Delta-G solvation = -3031.278175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97441 -38.83711 -35.16188 -33.62816 -32.40173 -31.25409 -30.20826 -29.07649 -27.10227 -25.26019 -22.98589 -22.65259 -20.56796 -19.35692 -18.66894 -17.82912 -17.12389 -15.85091 -15.37160 -15.12197 -14.89144 -14.52470 -14.09618 -13.45264 -13.40105 -13.30507 -12.92585 -12.71936 -12.64072 -12.41101 -11.99223 -11.95889 -11.70758 -11.41945 -11.25757 -11.00648 -10.94566 -10.81998 -10.34084 -10.18202 -9.63677 -9.53519 -9.25830 -9.05878 -8.93834 -8.51056 -8.38198 -7.83456 -6.13406 -4.23221 0.81369 1.45824 1.86802 2.88281 3.24126 3.29843 3.30505 3.37456 4.10533 4.15703 4.38933 4.85039 4.99127 5.13790 5.17939 5.28320 5.31750 5.49539 5.55840 5.61940 5.68600 5.73363 5.91851 6.04628 6.38641 6.39535 6.46958 6.65813 7.02992 7.19403 7.36103 7.44209 7.60593 7.72091 7.86598 7.89225 8.17161 8.64895 8.76338 9.12194 9.44283 10.91784 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.004052 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.869098 B = 6907.804884 C = 7235.798788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.537 6.537 16 C -0.070 4.070 17 C -0.189 4.189 18 S 0.125 5.875 19 C 0.035 3.965 20 C -0.073 4.073 21 N -0.470 5.470 22 C 0.070 3.930 23 C -0.077 4.077 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 8.136 11.305 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.415 6.415 16 C -0.113 4.113 17 C -0.310 4.310 18 S 0.381 5.619 19 C -0.242 4.242 20 C -0.134 4.134 21 N -0.186 5.186 22 C -0.061 4.061 23 C -0.136 4.136 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.087 8.718 10.155 16.759 hybrid contribution 1.351 -0.898 0.474 1.690 sum -8.736 7.820 10.628 15.825 Atomic orbital electron populations 1.21834 0.98324 0.97980 1.01216 1.21930 0.92584 0.99821 1.02252 1.18771 0.94126 0.89152 0.80962 0.93389 1.21197 0.90726 1.39177 1.06312 0.92149 1.24884 0.98577 0.94798 0.95376 1.69881 1.35231 1.37475 1.09323 0.86523 0.84886 0.78307 0.77465 1.20154 1.21132 1.20200 1.46483 1.14451 1.56110 1.18617 1.20129 0.82974 0.79780 0.88710 1.90701 1.51236 1.59307 1.40223 1.20168 0.91026 1.01212 0.98849 1.24986 0.99436 0.97089 1.09496 1.83810 1.02811 1.13630 1.61677 1.26800 0.98322 0.95968 1.03147 1.20385 0.94305 0.96211 1.02471 1.66082 1.31976 1.05087 1.15436 1.20009 0.86063 0.98125 1.01940 1.20335 1.03705 0.89282 1.00288 0.94277 0.95903 0.93259 0.95045 0.88342 0.92494 0.77978 0.87447 0.88264 0.89940 0.90255 0.89497 0.91004 0.90702 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.06 5.02 -54.94 -0.28 -14.33 16 14 C 0.50 9.50 6.39 -10.99 -0.07 9.43 16 15 O -0.54 -12.33 13.17 5.56 0.07 -12.25 16 16 C -0.07 -0.98 5.63 -29.04 -0.16 -1.14 16 17 C -0.19 -2.87 5.08 -35.92 -0.18 -3.06 16 18 S 0.12 1.71 23.18 -107.50 -2.49 -0.78 16 19 C 0.04 0.48 7.39 -13.46 -0.10 0.38 16 20 C -0.07 -0.67 10.46 36.01 0.38 -0.30 16 21 N -0.47 -7.38 10.53 -8.06 -0.08 -7.47 16 22 C 0.07 1.09 6.74 -84.23 -0.57 0.52 16 23 C -0.08 -1.01 9.81 36.00 0.35 -0.65 16 24 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.56 8.54 -40.82 -0.35 6.21 16 31 H 0.11 1.23 7.43 -51.93 -0.39 0.84 16 32 H 0.10 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.03 7.35 -51.93 -0.38 0.65 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -31.56 327.32 -8.42 -39.98 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.44 Total: 5.19 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.73 Total: -6.71 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.27 Total: -45.73 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.49 Total: -0.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.56 -8.42 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.741 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds