Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.46764 * 299.99275 * 16 14 13 18 18 C 1.52994 * 109.47265 * 59.99256 * 16 14 13 19 19 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 20 20 N 1.29027 * 124.92126 * 59.69327 * 19 16 14 21 21 C 1.31785 * 117.12419 * 179.81516 * 20 19 16 22 22 C 1.33639 * 114.50143 * 0.47057 * 21 20 19 23 23 S 1.70982 * 124.91149 * 239.99695 * 19 16 14 24 24 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 28 28 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 31 31 H 1.09011 * 109.47049 * 60.00192 * 17 16 14 32 32 H 1.08997 * 109.47527 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.47574 * 300.00361 * 17 16 14 34 34 H 1.09003 * 109.47121 * 60.00406 * 18 16 14 35 35 H 1.09006 * 109.47364 * 180.02562 * 18 16 14 36 36 H 1.08998 * 109.47597 * 300.00178 * 18 16 14 37 37 H 1.07999 * 122.74965 * 180.22627 * 21 20 19 38 38 H 1.07998 * 126.03812 * 179.72729 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 1.0065 4.4821 -2.9538 18 6 0.0797 2.3206 -3.7969 19 6 -1.3617 3.8852 -2.5234 20 7 -1.7334 4.7594 -1.6503 21 6 -2.9966 5.1342 -1.6755 22 6 -3.7336 4.5358 -2.6161 23 16 -2.6864 3.4322 -3.5050 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0558 2.9526 30 1 2.2719 2.1232 -1.9978 31 1 2.0176 4.0858 -3.0490 32 1 0.7184 4.9689 -3.8855 33 1 0.9756 5.2068 -2.1402 34 1 -0.6116 1.5052 -3.5838 35 1 -0.2084 2.8076 -4.7285 36 1 1.0906 1.9242 -3.8921 37 1 -3.4039 5.8621 -0.9894 38 1 -4.7854 4.6994 -2.7988 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907388587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -2.630232 kcal Electronic energy + Delta-G solvation = -20692.223331 eV Core-core repulsion = 17661.361843 eV Total energy + Delta-G solvation = -3030.861489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11625 -38.77207 -35.47638 -34.72550 -32.26555 -30.80083 -29.55417 -27.42187 -26.94000 -25.28719 -23.47663 -22.49217 -20.63904 -19.55776 -19.04873 -17.86058 -16.79799 -15.74894 -15.68867 -15.13718 -14.67386 -14.46229 -14.07586 -13.78418 -13.60754 -13.19486 -12.71156 -12.65075 -12.32988 -12.03447 -11.84858 -11.72422 -11.41727 -11.32072 -11.22721 -11.10134 -10.96540 -10.79377 -10.30232 -10.15652 -9.61082 -9.46036 -9.25394 -9.03454 -8.93196 -8.69513 -8.46547 -7.77280 -6.10027 -4.19368 0.82302 1.45025 1.84294 3.02289 3.26751 3.32302 3.33108 3.43552 4.08247 4.12236 4.39679 4.77408 5.03670 5.12705 5.21364 5.23429 5.41005 5.52437 5.58548 5.69000 5.79730 5.85368 6.08697 6.18704 6.33323 6.40505 6.47161 6.67933 7.05254 7.22281 7.39243 7.49240 7.64096 7.75654 7.93112 7.95220 8.20345 8.69834 8.80663 9.17798 9.48015 10.95325 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.004614 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.670067 B = 6067.342444 C = 6273.480864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.518 3.482 15 O -0.528 6.528 16 C -0.012 4.012 17 C -0.131 4.131 18 C -0.151 4.151 19 C 0.091 3.909 20 N -0.451 5.451 21 C 0.045 3.955 22 C -0.274 4.274 23 S 0.108 5.892 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.172 0.828 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 5.640 -13.708 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.300 3.700 15 O -0.405 6.405 16 C -0.020 4.020 17 C -0.190 4.190 18 C -0.209 4.209 19 C -0.188 4.188 20 N -0.164 5.164 21 C -0.106 4.106 22 C -0.413 4.413 23 S 0.363 5.637 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.189 0.811 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.435 5.024 -13.258 17.030 hybrid contribution 0.738 0.597 0.470 1.059 sum -8.696 5.621 -12.788 16.455 Atomic orbital electron populations 1.21836 0.98447 0.97932 1.01176 1.21930 0.92499 0.99894 1.02217 1.18768 0.94124 0.89053 0.80965 0.93334 1.21187 0.90687 1.39147 1.06179 0.92147 1.24880 0.98516 0.94833 0.95393 1.69890 1.35183 1.37677 1.09205 0.86530 0.84967 0.78300 0.77419 1.20190 1.21178 1.20185 1.46412 1.14290 1.56117 1.18514 1.19682 0.83168 0.79371 0.87793 1.90706 1.51372 1.58714 1.39707 1.19534 0.88818 0.96782 0.96854 1.21799 0.97822 0.96827 1.02507 1.21995 1.04292 0.98283 0.96356 1.26488 0.99348 0.97736 0.95268 1.66109 1.16425 1.13273 1.20549 1.21815 0.88173 1.01527 0.99080 1.27044 1.05050 1.05150 1.04037 1.83771 1.02468 1.41474 1.35956 0.93224 0.94409 0.95918 0.95035 0.88358 0.92540 0.78095 0.90802 0.91867 0.90951 0.91385 0.91155 0.89926 0.81086 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.72 11.31 55.43 0.63 -24.09 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.33 4.81 -54.93 -0.26 -14.59 16 14 C 0.52 10.32 5.04 -10.99 -0.06 10.27 16 15 O -0.53 -12.71 12.82 5.55 0.07 -12.64 16 16 C -0.01 -0.19 0.84 -156.82 -0.13 -0.32 16 17 C -0.13 -1.71 8.35 37.16 0.31 -1.40 16 18 C -0.15 -1.78 7.43 37.15 0.28 -1.50 16 19 C 0.09 1.43 5.24 -13.46 -0.07 1.36 16 20 N -0.45 -7.79 10.05 -11.86 -0.12 -7.91 16 21 C 0.05 0.63 11.35 -19.18 -0.22 0.42 16 22 C -0.27 -3.22 11.37 29.12 0.33 -2.89 16 23 S 0.11 1.34 21.57 -107.50 -2.32 -0.98 16 24 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 25 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 6.74 7.37 -40.82 -0.30 6.44 16 31 H 0.07 0.87 7.56 -51.92 -0.39 0.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.85 7.92 -51.93 -0.41 0.43 16 35 H 0.07 0.66 7.92 -51.93 -0.41 0.24 16 36 H 0.08 0.88 7.56 -51.93 -0.39 0.48 16 37 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -31.66 321.35 -7.51 -39.17 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.39 Total: 6.65 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.06 Total: -5.93 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.24 Total: -46.59 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.32 Total: -0.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.66 -7.51 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907388587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.538 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds