Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46959 * 2 1 4 4 C 1.33634 * 122.75240 * 84.97847 * 3 2 1 5 5 S 1.76196 * 107.92733 * 179.80096 * 4 3 2 6 6 C 1.70975 * 90.28096 * 0.28222 * 5 4 3 7 7 C 1.50698 * 124.91521 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47364 * 164.69928 * 7 6 5 9 9 C 1.53000 * 109.47696 * 284.69987 * 7 6 5 10 10 N 1.46506 * 109.47166 * 44.69860 * 7 6 5 11 11 C 1.34773 * 119.99968 * 154.99565 * 10 7 6 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 7 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 7 14 14 C 1.52998 * 109.47348 * 179.72561 * 13 11 10 15 15 C 1.50696 * 109.46969 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47112 * 89.99781 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00049 * 19 17 15 22 22 H 1.48494 * 109.47201 * 330.00023 * 19 17 15 23 23 N 1.29024 * 110.16701 * 359.71311 * 6 5 4 24 24 H 1.09001 * 109.46857 * 299.99920 * 1 2 3 25 25 H 1.09002 * 109.47440 * 59.99748 * 1 2 3 26 26 H 1.08999 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46857 * 240.00080 * 2 1 3 28 28 H 1.08996 * 109.47280 * 119.99833 * 2 1 3 29 29 H 1.08008 * 126.03513 * 0.02562 * 4 3 2 30 30 H 1.08996 * 109.47804 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.46963 * 300.00145 * 9 7 6 32 32 H 1.09001 * 109.47185 * 59.99705 * 9 7 6 33 33 H 0.96998 * 119.99507 * 335.00420 * 10 7 6 34 34 H 1.09001 * 109.46564 * 299.73030 * 13 11 10 35 35 H 1.08998 * 109.47012 * 59.72084 * 13 11 10 36 36 H 1.09000 * 109.46986 * 300.00089 * 14 13 11 37 37 H 1.09002 * 109.46857 * 60.00224 * 14 13 11 38 38 H 0.96999 * 119.99905 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1805 2.1352 1.1196 5 16 2.7909 3.7261 0.6710 6 6 2.7782 3.2752 -0.9782 7 6 3.1995 4.1652 -2.1190 8 1 3.3531 3.5614 -3.0133 9 6 2.1078 5.2034 -2.3860 10 7 4.4479 4.8480 -1.7704 11 6 5.2752 5.2781 -2.7436 12 8 4.9886 5.0955 -3.9078 13 6 6.5597 5.9800 -2.3850 14 6 7.3103 6.3550 -3.6644 15 6 8.5944 7.0574 -3.3057 16 1 8.8499 7.2197 -2.2691 17 6 9.4432 7.4930 -4.3013 18 7 9.1319 7.2958 -5.5636 19 14 11.0353 8.3630 -3.8567 20 1 12.1224 7.3619 -3.7105 21 1 11.3899 9.3256 -4.9305 22 1 10.8594 9.0932 -2.5757 23 7 2.3610 2.0608 -1.1041 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9675 1.7960 2.1226 30 1 2.4126 5.8474 -3.2108 31 1 1.1789 4.6954 -2.6453 32 1 1.9541 5.8073 -1.4916 33 1 4.6790 4.9905 -0.8392 34 1 6.3341 6.8831 -1.8180 35 1 7.1795 5.3173 -1.7811 36 1 7.5358 5.4518 -4.2313 37 1 6.6904 7.0178 -4.2682 38 1 9.7289 7.6025 -6.2640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910739918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -15.987319 kcal Electronic energy + Delta-G solvation = -19076.881028 eV Core-core repulsion = 16045.440332 eV Total energy + Delta-G solvation = -3031.440695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33729 -39.25940 -35.80355 -33.65354 -33.45355 -31.49051 -30.35502 -29.14485 -26.09095 -25.63065 -24.13017 -22.16119 -21.09739 -20.30293 -19.28703 -18.07743 -16.97159 -16.19746 -15.74800 -15.32826 -15.08336 -14.70768 -14.43375 -14.40123 -14.27021 -13.45487 -13.27460 -13.10604 -12.64656 -12.42576 -12.22550 -12.10716 -12.04072 -11.61060 -11.47048 -11.19872 -11.16374 -10.92631 -10.59918 -9.96413 -9.87602 -9.68583 -9.67538 -9.25979 -9.09624 -9.01222 -8.91037 -8.31768 -5.95758 -4.00149 0.41138 1.07058 1.47077 2.48282 3.17291 3.26475 3.33835 3.40083 3.42637 3.87654 4.47518 4.49285 4.70700 4.88825 4.98633 5.05147 5.17051 5.18162 5.23863 5.39277 5.45819 5.53594 5.61409 5.73739 5.77712 5.89499 5.95919 6.09410 6.20803 6.22298 6.54903 6.86673 7.50216 7.73203 7.75754 7.86027 8.07183 8.38200 8.69135 9.08190 9.63358 11.15198 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.002939 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.536279 B = 9525.306941 C = 9712.043049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.073 3.927 4 C -0.262 4.262 5 S 0.128 5.872 6 C 0.051 3.949 7 C 0.217 3.783 8 H 0.117 0.883 9 C -0.157 4.157 10 N -0.741 5.741 11 C 0.515 3.485 12 O -0.526 6.526 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.461 5.461 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.395 0.605 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 -10.860 16.241 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.401 4.401 5 S 0.383 5.617 6 C -0.228 4.228 7 C 0.108 3.892 8 H 0.135 0.865 9 C -0.216 4.216 10 N -0.397 5.397 11 C 0.304 3.696 12 O -0.400 6.400 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.175 5.175 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.194 0.806 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.673 -10.256 15.196 25.464 hybrid contribution 0.665 -0.362 0.796 1.099 sum -17.008 -10.619 15.992 25.647 Atomic orbital electron populations 1.21734 0.94223 1.02056 1.02297 1.20148 0.96184 0.89095 1.03628 1.20318 1.00624 0.98557 0.86481 1.26831 1.12091 0.97102 1.04105 1.83955 1.59976 1.14532 1.03240 1.27226 1.02599 0.94796 0.98184 1.19256 0.85223 0.91418 0.93282 0.86537 1.22205 0.97663 0.98706 1.03063 1.46410 1.21516 1.61616 1.10190 1.21624 0.85301 0.77627 0.85042 1.90685 1.75070 1.55186 1.19108 1.21895 0.91637 0.99391 1.03994 1.18909 0.93809 0.97392 0.89962 1.21213 1.04783 1.37803 0.92762 0.92588 1.25026 0.98219 0.96146 0.95003 1.69994 1.37156 1.46587 0.99059 0.86588 0.83798 0.79493 0.78051 1.20682 1.21224 1.19892 1.66069 1.13779 1.06090 1.31610 0.92653 0.92283 0.91892 0.89853 0.90185 0.80565 0.90169 0.91318 0.92176 0.77060 0.90018 0.90106 0.95762 0.95709 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.40 6.35 -27.88 -0.18 -0.58 16 3 C 0.07 0.77 5.99 -84.23 -0.50 0.26 16 4 C -0.26 -2.34 11.14 29.12 0.32 -2.01 16 5 S 0.13 1.21 22.26 -107.50 -2.39 -1.19 16 6 C 0.05 0.62 6.30 -13.46 -0.08 0.54 16 7 C 0.22 2.94 3.09 -69.08 -0.21 2.73 16 8 H 0.12 1.86 7.57 -51.93 -0.39 1.46 16 9 C -0.16 -1.86 9.47 37.16 0.35 -1.51 16 10 N -0.74 -10.63 5.06 -54.93 -0.28 -10.91 16 11 C 0.52 9.79 7.79 -10.98 -0.09 9.70 16 12 O -0.53 -12.15 15.64 5.56 0.09 -12.06 16 13 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 14 C 0.04 0.98 4.26 -27.89 -0.12 0.87 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 N -0.46 -6.01 10.53 -8.06 -0.08 -6.10 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.64 7.78 -40.82 -0.32 4.32 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -33.92 339.21 -8.29 -42.22 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.74 Total: -0.01 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.71 Total: -7.01 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.37 Total: -43.70 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.39 Total: -1.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.92 -8.29 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910739918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.229 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds