Wall clock time and date at job start Tue Mar 31 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47104 * 2 1 4 4 C 1.33639 * 122.75004 * 84.98103 * 3 2 1 5 5 S 1.76200 * 107.92308 * 179.97438 * 4 3 2 6 6 C 1.70979 * 90.28480 * 359.97438 * 5 4 3 7 7 C 1.50697 * 124.91475 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46984 * 195.02147 * 7 6 5 9 9 C 1.53000 * 109.46811 * 75.03010 * 7 6 5 10 10 N 1.46499 * 109.47763 * 315.02872 * 7 6 5 11 11 C 1.34777 * 120.00199 * 205.00186 * 10 7 6 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 7 14 14 C 1.52996 * 109.47159 * 179.72352 * 13 11 10 15 15 C 1.50697 * 109.47491 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99437 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00278 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00140 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47213 * 89.99904 * 19 17 15 21 21 H 1.48497 * 109.47216 * 209.99799 * 19 17 15 22 22 H 1.48504 * 109.47159 * 330.00245 * 19 17 15 23 23 N 1.29025 * 110.16740 * 0.24462 * 6 5 4 24 24 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46488 * 299.99755 * 1 2 3 26 26 H 1.08996 * 109.47372 * 59.99584 * 1 2 3 27 27 H 1.09004 * 109.46488 * 240.00245 * 2 1 3 28 28 H 1.08996 * 109.47372 * 120.00416 * 2 1 3 29 29 H 1.07997 * 126.03889 * 0.03264 * 4 3 2 30 30 H 1.09005 * 109.47473 * 179.97438 * 9 7 6 31 31 H 1.08998 * 109.46925 * 299.99315 * 9 7 6 32 32 H 1.08998 * 109.47598 * 59.99720 * 9 7 6 33 33 H 0.97000 * 119.99484 * 24.99284 * 10 7 6 34 34 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 35 35 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 36 36 H 1.09004 * 109.47066 * 299.99797 * 14 13 11 37 37 H 1.09000 * 109.47234 * 59.99288 * 14 13 11 38 38 H 0.96998 * 120.00586 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1807 2.1352 1.1196 5 16 2.7863 3.7277 0.6705 6 6 2.7807 3.2743 -0.9780 7 6 3.2021 4.1643 -2.1188 8 1 2.8558 3.7371 -3.0600 9 6 4.7278 4.2771 -2.1408 10 7 2.6166 5.4955 -1.9418 11 6 2.4133 6.2899 -3.0114 12 8 2.7155 5.9029 -4.1204 13 6 1.8167 7.6617 -2.8286 14 6 1.6996 8.3523 -4.1888 15 6 1.1025 9.7238 -4.0062 16 1 0.8330 10.0682 -3.0187 17 6 0.9002 10.5388 -5.0996 18 7 0.3795 11.7360 -4.9401 19 14 1.3670 9.9434 -6.8075 20 1 0.2081 9.2483 -7.4233 21 1 1.7515 11.1050 -7.6489 22 1 2.5123 9.0033 -6.7082 23 7 2.3580 2.0619 -1.1045 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.9678 1.7960 2.1226 30 1 5.0327 4.9204 -2.9662 31 1 5.0741 4.7042 -1.1997 32 1 5.1635 3.2867 -2.2725 33 1 2.3751 5.8050 -1.0548 34 1 0.8270 7.5708 -2.3809 35 1 2.4582 8.2527 -2.1750 36 1 2.6893 8.4433 -4.6365 37 1 1.0582 7.7612 -4.8424 38 1 0.2368 12.3093 -5.7094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910739920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:43 Heat of formation + Delta-G solvation = -13.296689 kcal Electronic energy + Delta-G solvation = -19167.247228 eV Core-core repulsion = 16135.923207 eV Total energy + Delta-G solvation = -3031.324021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38742 -39.38686 -35.90479 -33.69148 -33.49413 -31.63277 -30.62555 -29.20921 -26.31872 -25.83084 -24.14202 -22.01874 -21.06333 -20.25470 -19.36801 -18.13764 -17.24947 -16.28450 -15.99905 -15.44834 -15.25375 -14.88679 -14.38384 -14.15270 -13.97253 -13.62841 -13.44894 -13.24621 -12.77393 -12.56028 -12.37440 -12.24667 -12.15218 -11.66711 -11.52047 -11.42058 -11.22491 -10.96227 -10.18512 -10.06127 -9.91573 -9.79079 -9.72308 -9.36492 -9.18803 -9.12253 -8.98395 -8.50585 -6.02863 -4.01812 0.36882 1.02925 1.43040 2.43633 3.03323 3.18008 3.38608 3.45221 3.55831 3.80723 4.44832 4.51220 4.68369 4.85657 4.97198 4.99403 5.11113 5.15624 5.19345 5.32649 5.32987 5.52572 5.53985 5.70828 5.76879 5.82052 5.93415 6.01747 6.05487 6.07566 6.43996 6.66191 7.35544 7.42535 7.45461 7.61584 7.78526 8.47507 8.57117 8.99971 9.60081 11.09930 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.003193 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.660492 B = 8768.124899 C = 8802.781267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.072 3.928 4 C -0.261 4.261 5 S 0.130 5.870 6 C 0.048 3.952 7 C 0.217 3.783 8 H 0.117 0.883 9 C -0.157 4.157 10 N -0.739 5.739 11 C 0.516 3.484 12 O -0.532 6.532 13 C -0.122 4.122 14 C 0.001 3.999 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 N -0.461 5.461 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.177 0.823 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.265 -22.344 15.344 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.060 4.060 4 C -0.400 4.400 5 S 0.385 5.615 6 C -0.231 4.231 7 C 0.109 3.891 8 H 0.135 0.865 9 C -0.217 4.217 10 N -0.395 5.395 11 C 0.305 3.695 12 O -0.407 6.407 13 C -0.161 4.161 14 C -0.036 4.036 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 N -0.175 5.175 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.195 0.805 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.669 -21.748 14.432 26.709 hybrid contribution -0.298 -0.930 -0.290 1.018 sum 5.371 -22.677 14.142 27.260 Atomic orbital electron populations 1.21744 0.94130 1.02097 1.02475 1.20144 0.96293 0.89023 1.03497 1.20326 1.00621 0.98646 0.86447 1.26845 1.12090 0.96919 1.04146 1.83978 1.59834 1.14539 1.03129 1.27195 1.02397 0.95272 0.98189 1.19257 0.93988 0.81310 0.94590 0.86548 1.22207 0.93029 1.03072 1.03359 1.46365 1.66575 1.15606 1.10938 1.21597 0.76844 0.87588 0.83490 1.90668 1.50377 1.75035 1.24659 1.21694 1.01061 0.89899 1.03492 1.19378 0.97788 0.95494 0.90986 1.21102 1.41496 0.97955 0.95756 0.90916 1.24970 0.94402 0.94642 0.99222 1.69910 1.44682 1.08777 1.30877 0.86796 0.79985 0.78452 0.84322 1.20239 1.21458 1.18488 1.66070 1.13192 1.06668 1.31582 0.91864 0.92576 0.92197 0.89930 0.90213 0.80517 0.90227 0.92077 0.91252 0.76860 0.89476 0.89346 0.95720 0.96211 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.68 16 2 C -0.05 -0.38 6.35 -27.88 -0.18 -0.55 16 3 C 0.07 0.73 5.99 -84.22 -0.50 0.23 16 4 C -0.26 -2.24 11.14 29.12 0.32 -1.92 16 5 S 0.13 1.18 22.28 -107.50 -2.39 -1.21 16 6 C 0.05 0.57 6.30 -13.46 -0.08 0.48 16 7 C 0.22 2.79 3.08 -69.08 -0.21 2.58 16 8 H 0.12 1.75 7.58 -51.93 -0.39 1.36 16 9 C -0.16 -1.76 9.47 37.16 0.35 -1.41 16 10 N -0.74 -10.02 5.06 -54.93 -0.28 -10.30 16 11 C 0.52 9.21 7.79 -10.98 -0.09 9.13 16 12 O -0.53 -11.48 15.65 5.55 0.09 -11.39 16 13 C -0.12 -2.32 5.64 -27.88 -0.16 -2.47 16 14 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 15 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 19 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 23 N -0.46 -5.79 10.53 -8.06 -0.08 -5.87 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 4.41 7.79 -40.82 -0.32 4.09 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 37 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -33.95 335.64 -7.92 -41.87 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.71 Total: -0.80 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.70 Total: -8.02 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.41 Total: -43.40 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.39 Total: -1.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.95 -7.92 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910739920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.571 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds