Wall clock time and date at job start Tue Mar 31 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 C 1.53001 * 109.46881 * 119.99659 * 2 1 3 5 5 C 1.50699 * 109.46934 * 175.00213 * 4 2 1 6 6 N 1.29420 * 124.80558 * 89.97764 * 5 4 2 7 7 C 1.30938 * 117.36557 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.18967 * 359.97438 * 7 6 5 9 9 C 1.46686 * 126.12992 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00018 * 354.03688 * 9 8 7 11 11 N 1.34772 * 120.00133 * 174.04235 * 9 8 7 12 12 C 1.46510 * 119.99777 * 2.36731 * 11 9 8 13 13 C 1.46497 * 120.00359 * 182.37151 * 11 9 8 14 14 C 1.50705 * 109.47008 * 89.99818 * 13 11 9 15 15 H 1.07994 * 120.00044 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99806 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00229 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47148 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47531 * 119.99514 * 18 16 14 21 21 H 1.48505 * 109.47160 * 239.99673 * 18 16 14 22 22 S 1.70956 * 124.80137 * 270.01302 * 5 4 2 23 23 H 1.09002 * 109.47194 * 300.00617 * 1 2 3 24 24 H 1.09005 * 109.46760 * 60.00258 * 1 2 3 25 25 H 1.09000 * 109.47551 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46989 * 239.99209 * 2 1 3 27 27 H 1.09008 * 109.46666 * 299.99549 * 3 2 1 28 28 H 1.08989 * 109.47557 * 59.99442 * 3 2 1 29 29 H 1.09001 * 109.46385 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46975 * 54.99965 * 4 2 1 31 31 H 1.09004 * 109.46766 * 295.00108 * 4 2 1 32 32 H 1.08004 * 122.90857 * 179.73095 * 7 6 5 33 33 H 1.08992 * 109.46717 * 55.58057 * 12 11 9 34 34 H 1.09003 * 109.46491 * 175.58021 * 12 11 9 35 35 H 1.08998 * 109.46953 * 295.58081 * 12 11 9 36 36 H 1.09003 * 109.47639 * 209.99632 * 13 11 9 37 37 H 1.09001 * 109.47298 * 329.99947 * 13 11 9 38 38 H 0.97002 * 120.00041 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 7 4.3654 0.0502 1.6616 7 6 5.6454 -0.1915 1.5291 8 6 5.9284 -1.3595 0.8996 9 6 7.2675 -1.8854 0.6133 10 8 8.2505 -1.2087 0.8509 11 7 7.4090 -3.1180 0.0869 12 6 6.2242 -3.9122 -0.2475 13 6 8.7476 -3.6637 -0.1507 14 6 9.2113 -4.4084 1.0748 15 1 8.5726 -4.4693 1.9435 16 6 10.4510 -5.0118 1.0868 17 7 11.2286 -4.9379 0.0287 18 14 11.0261 -5.9341 2.6059 19 1 9.9741 -5.8696 3.6520 20 1 11.2885 -7.3528 2.2540 21 1 12.2732 -5.3127 3.1198 22 16 4.3990 -2.1306 0.4858 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8898 29 1 3.1300 1.4424 -0.0005 30 1 1.6053 -1.7197 1.2952 31 1 1.7515 -0.1581 2.1370 32 1 6.4099 0.4826 1.8862 33 1 5.5859 -3.3449 -0.9248 34 1 6.5329 -4.8394 -0.7303 35 1 5.6725 -4.1431 0.6638 36 1 8.7164 -4.3460 -1.0002 37 1 9.4396 -2.8490 -0.3643 38 1 12.1006 -5.3628 0.0371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930593901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:16 Heat of formation + Delta-G solvation = -4.390049 kcal Electronic energy + Delta-G solvation = -19627.993465 eV Core-core repulsion = 16597.055665 eV Total energy + Delta-G solvation = -3030.937800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88426 -38.73606 -36.49511 -34.98003 -32.73329 -31.00950 -28.64049 -27.62190 -27.33230 -26.01707 -24.31604 -23.05610 -20.64819 -20.55394 -18.50708 -17.92391 -16.61156 -16.20041 -15.70391 -15.25170 -15.13410 -14.77968 -14.51116 -14.07271 -13.89835 -13.36767 -13.06089 -12.68374 -12.61502 -12.51090 -12.26720 -12.18548 -12.05525 -11.35766 -11.34517 -11.29289 -11.14049 -10.97865 -10.90857 -10.67147 -10.21890 -9.74542 -9.44209 -9.24464 -9.22824 -8.75871 -8.48925 -7.77730 -6.09964 -4.15271 0.47062 1.35423 1.77965 2.72251 3.27235 3.35065 3.38932 3.67649 3.83061 4.07746 4.40856 4.58035 4.64395 4.75462 5.03465 5.19823 5.25405 5.31626 5.34022 5.42687 5.43264 5.52015 5.59321 5.64874 5.65704 5.71251 5.87073 5.98327 6.04425 6.16012 6.28302 6.91143 7.32169 7.40086 7.77319 7.85821 8.14472 8.20005 8.76912 8.92994 9.50116 10.98154 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037552 B = 0.003688 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.461107 B = 7589.689580 C = 7718.519549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.040 4.040 5 C 0.019 3.981 6 N -0.477 5.477 7 C 0.102 3.898 8 C -0.271 4.271 9 C 0.580 3.420 10 O -0.525 6.525 11 N -0.592 5.592 12 C 0.071 3.929 13 C 0.246 3.754 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 S 0.182 5.818 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.184 0.816 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 5.856 -1.581 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.081 4.081 5 C -0.255 4.255 6 N -0.191 5.191 7 C -0.055 4.055 8 C -0.396 4.396 9 C 0.365 3.635 10 O -0.404 6.404 11 N -0.323 5.323 12 C -0.074 4.074 13 C 0.127 3.873 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.208 1.208 22 S 0.440 5.560 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.201 0.799 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.390 5.663 -1.783 22.198 hybrid contribution 1.076 -0.019 1.181 1.597 sum -20.314 5.644 -0.602 21.092 Atomic orbital electron populations 1.21832 0.94463 1.01901 1.02131 1.21119 0.95858 0.97059 0.97026 1.21840 1.02009 0.95095 1.01453 1.20384 0.85406 1.02067 1.00212 1.27741 1.01395 0.95990 1.00400 1.66242 1.02149 1.30192 1.20524 1.22091 0.92160 0.94824 0.96418 1.26145 0.97985 1.02306 1.13118 1.16724 0.85730 0.82136 0.78920 1.90813 1.38321 1.58220 1.53018 1.48056 1.09387 1.14289 1.60585 1.21761 0.88072 0.97331 1.00277 1.19434 0.76333 0.94633 0.96889 1.21456 1.01905 1.33245 1.00246 0.92303 1.24934 0.96218 0.96367 0.96508 1.69939 1.10292 1.44298 1.28687 0.86416 0.78824 0.79214 0.82829 1.19767 1.20883 1.20783 1.84343 0.96396 1.21818 1.53452 0.92424 0.92344 0.92490 0.90953 0.92981 0.92461 0.92026 0.89707 0.88991 0.79905 0.92747 0.88580 0.92250 0.94510 0.93394 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.73 2.91 -90.62 -0.26 -0.99 16 3 C -0.15 -1.35 8.99 37.16 0.33 -1.01 16 4 C -0.04 -0.36 5.27 -27.88 -0.15 -0.50 16 5 C 0.02 0.23 5.88 -13.29 -0.08 0.16 16 6 N -0.48 -7.03 9.74 -11.50 -0.11 -7.14 16 7 C 0.10 1.66 11.10 -18.85 -0.21 1.46 16 8 C -0.27 -4.72 6.33 -37.09 -0.23 -4.96 16 9 C 0.58 12.71 7.64 -12.85 -0.10 12.61 16 10 O -0.53 -13.56 16.44 5.20 0.09 -13.48 16 11 N -0.59 -12.75 2.86 -184.50 -0.53 -13.28 16 12 C 0.07 1.14 8.78 59.85 0.53 1.66 16 13 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 14 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 S 0.18 2.32 17.81 -107.50 -1.91 0.41 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.51 8.14 -51.94 -0.42 0.09 16 29 H 0.06 0.71 6.80 -51.93 -0.35 0.36 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.18 2.92 8.06 -52.48 -0.42 2.49 16 33 H 0.05 0.73 6.03 -37.06 -0.22 0.51 16 34 H 0.10 1.45 7.77 -51.93 -0.40 1.05 16 35 H 0.06 0.88 6.87 -51.77 -0.36 0.52 16 36 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 37 H 0.05 1.40 7.39 -51.93 -0.38 1.01 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -32.76 329.15 -7.55 -40.31 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.48 Total: -3.59 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.28 Total: 0.61 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.10 Total: -45.95 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.91 Total: 0.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.76 -7.55 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.917 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds