Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 C 1.52993 * 109.47243 * 120.00283 * 2 1 3 5 5 C 1.50700 * 109.47466 * 64.99473 * 4 2 1 6 6 N 1.29431 * 124.80083 * 89.97346 * 5 4 2 7 7 C 1.30944 * 117.36540 * 180.02562 * 6 5 4 8 8 C 1.35664 * 114.18872 * 359.97438 * 7 6 5 9 9 C 1.46684 * 126.12788 * 179.97438 * 8 7 6 10 10 O 1.21694 * 119.99829 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00162 * 0.02643 * 9 8 7 12 12 C 1.46502 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47072 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00051 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99883 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99750 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46984 * 89.99998 * 18 16 14 20 20 H 1.48498 * 109.47665 * 210.00048 * 18 16 14 21 21 H 1.48507 * 109.47244 * 330.00025 * 18 16 14 22 22 S 1.70947 * 124.80857 * 270.00631 * 5 4 2 23 23 H 1.08993 * 109.47317 * 300.00029 * 1 2 3 24 24 H 1.09006 * 109.46897 * 60.00120 * 1 2 3 25 25 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47269 * 240.00262 * 2 1 3 27 27 H 1.09003 * 109.46896 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47324 * 299.99734 * 3 2 1 29 29 H 1.08998 * 109.46970 * 60.00293 * 3 2 1 30 30 H 1.09005 * 109.47210 * 305.00078 * 4 2 1 31 31 H 1.08996 * 109.47517 * 184.99907 * 4 2 1 32 32 H 1.07999 * 122.90578 * 179.73662 * 7 6 5 33 33 H 0.96999 * 120.00308 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47279 * 300.00223 * 12 11 9 35 35 H 1.08994 * 109.47391 * 60.00349 * 12 11 9 36 36 H 1.09001 * 109.46967 * 300.00067 * 13 12 11 37 37 H 1.09008 * 109.47248 * 59.99799 * 13 12 11 38 38 H 0.96998 * 120.00075 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 -2.1733 1.1889 6 7 2.3537 -3.1135 0.6562 7 6 1.8652 -4.3281 0.6840 8 6 0.6521 -4.4257 1.2834 9 6 -0.1302 -5.6542 1.4575 10 8 -1.2114 -5.6133 2.0145 11 7 0.3484 -6.8284 1.0007 12 6 -0.4326 -8.0555 1.1751 13 6 0.3313 -9.2362 0.5726 14 6 -0.4719 -10.4986 0.7525 15 1 -1.4314 -10.4623 1.2468 16 6 0.0179 -11.6998 0.2852 17 7 -0.6833 -12.8014 0.4419 18 14 1.6772 -11.7626 -0.5703 19 1 2.7436 -12.0029 0.4349 20 1 1.6792 -12.8635 -1.5668 21 1 1.9282 -10.4711 -1.2591 22 16 0.1838 -2.8118 1.8136 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 2.3815 -5.1779 0.2626 33 1 1.2104 -6.8611 0.5570 34 1 -0.5969 -8.2337 2.2378 35 1 -1.3935 -7.9492 0.6717 36 1 0.4959 -9.0583 -0.4901 37 1 1.2922 -9.3424 1.0763 38 1 -0.3389 -13.6464 0.1128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = -18.898509 kcal Electronic energy + Delta-G solvation = -18881.019764 eV Core-core repulsion = 15849.452830 eV Total energy + Delta-G solvation = -3031.566934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25143 -39.03423 -36.78006 -35.09539 -32.91748 -31.57918 -30.06478 -28.29590 -27.59170 -25.03711 -24.46803 -21.97038 -20.97827 -20.71405 -19.35302 -18.30192 -17.16619 -16.87858 -15.66938 -15.56611 -15.13491 -14.92562 -14.51088 -14.49545 -14.18683 -13.85421 -13.48399 -13.16677 -12.96243 -12.65895 -12.62903 -12.30637 -11.76833 -11.54698 -11.51465 -11.36374 -11.25364 -11.12158 -10.50911 -10.44687 -10.08850 -9.96446 -9.61044 -9.57039 -9.35776 -9.09161 -8.69757 -8.60438 -6.13541 -4.14126 0.10159 0.98759 1.51557 2.33454 3.23796 3.27613 3.31655 3.32479 3.50987 3.75990 4.35503 4.39893 4.43213 4.54790 4.82548 4.89178 5.10385 5.11356 5.18618 5.19233 5.25295 5.34924 5.45574 5.53990 5.68468 5.81787 5.86206 5.92774 6.03704 6.13494 6.49234 6.59281 7.06129 7.17595 7.41031 7.62105 7.71284 8.32974 8.42203 8.90410 9.46199 10.99377 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036557 B = 0.002986 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.747236 B = 9374.818505 C = 9856.690750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.041 4.041 5 C 0.039 3.961 6 N -0.476 5.476 7 C 0.087 3.913 8 C -0.288 4.288 9 C 0.585 3.415 10 O -0.540 6.540 11 N -0.711 5.711 12 C 0.131 3.869 13 C -0.022 4.022 14 C -0.524 4.524 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 S 0.225 5.775 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 27.843 -0.215 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.082 4.082 5 C -0.236 4.236 6 N -0.190 5.190 7 C -0.071 4.071 8 C -0.413 4.413 9 C 0.369 3.631 10 O -0.419 6.419 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.060 4.060 14 C -0.562 4.562 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.535 5.535 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 S 0.483 5.517 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.198 0.802 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.980 28.241 0.467 28.871 hybrid contribution 1.792 -1.199 -1.090 2.416 sum 7.772 27.043 -0.622 28.144 Atomic orbital electron populations 1.22038 0.94867 1.02364 1.02433 1.21113 0.96244 0.96295 0.97504 1.21818 1.01205 0.95059 1.02195 1.20441 1.03079 0.85138 0.99546 1.27477 0.95559 1.00672 0.99880 1.66108 1.34093 0.99583 1.19217 1.22188 0.91915 0.95061 0.97938 1.25978 1.02085 0.99694 1.13505 1.16746 0.84996 0.82042 0.79361 1.90839 1.21328 1.86400 1.43351 1.46123 1.23445 1.07698 1.58810 1.21614 0.94814 0.81192 1.01486 1.19812 0.96393 0.93600 0.96221 1.20891 1.06258 0.89923 1.39142 0.90554 1.25000 0.97376 0.95496 0.95393 1.69901 1.38216 0.98928 1.46496 0.86753 0.84468 0.78020 0.79848 1.20187 1.21235 1.19053 1.84043 1.18865 0.97109 1.51665 0.92163 0.92008 0.92461 0.90360 0.92338 0.92210 0.92390 0.89389 0.88473 0.80170 0.76917 0.91541 0.91515 0.95872 0.96307 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.89 37.16 0.33 -0.74 16 2 C -0.09 -0.59 2.91 -90.62 -0.26 -0.86 16 3 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 4 C -0.04 -0.29 5.27 -27.89 -0.15 -0.44 16 5 C 0.04 0.40 6.01 -13.29 -0.08 0.32 16 6 N -0.48 -5.74 10.51 -11.50 -0.12 -5.86 16 7 C 0.09 1.06 10.93 -18.85 -0.21 0.86 16 8 C -0.29 -4.00 6.48 -37.09 -0.24 -4.24 16 9 C 0.58 9.99 7.79 -12.85 -0.10 9.89 16 10 O -0.54 -11.10 16.97 5.19 0.09 -11.01 16 11 N -0.71 -11.80 5.54 -61.62 -0.34 -12.14 16 12 C 0.13 2.64 5.61 -4.04 -0.02 2.61 16 13 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 14 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 15 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 18 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 22 S 0.22 2.56 21.47 -107.50 -2.31 0.25 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.47 6.14 -51.93 -0.32 0.15 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.18 1.79 7.15 -52.49 -0.38 1.41 16 33 H 0.40 5.43 7.18 -40.82 -0.29 5.13 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 37 H 0.02 0.41 7.57 -51.92 -0.39 0.01 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.70 331.99 -8.08 -40.78 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.57 Total: -0.30 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.93 Total: -6.57 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.31 Total: -44.39 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.31 Total: 0.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.70 -8.08 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.880 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds