Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 C 1.53003 * 109.46990 * 240.00248 * 2 1 3 5 5 C 1.52999 * 109.47467 * 119.99954 * 2 1 3 6 6 N 1.46504 * 109.46835 * 66.45962 * 5 2 1 7 7 C 1.46499 * 119.99831 * 269.04517 * 6 5 2 8 8 C 1.50699 * 109.47169 * 269.99922 * 7 6 5 9 9 H 1.07995 * 120.00254 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00070 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99799 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47259 * 90.00055 * 12 10 8 14 14 H 1.48504 * 109.46779 * 210.00053 * 12 10 8 15 15 H 1.48505 * 109.47167 * 329.99680 * 12 10 8 16 16 C 1.34778 * 119.99924 * 89.04954 * 6 5 2 17 17 O 1.21630 * 119.99877 * 187.33064 * 16 6 5 18 18 C 1.47107 * 119.99814 * 7.33395 * 16 6 5 19 19 C 1.38389 * 127.99286 * 172.21217 * 18 16 6 20 20 C 1.37578 * 111.26062 * 179.82269 * 19 18 16 21 21 N 1.29562 * 117.94420 * 0.50536 * 20 19 18 22 22 S 1.56304 * 110.38156 * 359.71064 * 21 20 19 23 23 H 1.09007 * 109.47140 * 299.99757 * 1 2 3 24 24 H 1.09000 * 109.47425 * 59.99685 * 1 2 3 25 25 H 1.08995 * 109.47404 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47121 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46848 * 300.00450 * 3 2 1 28 28 H 1.08996 * 109.47211 * 59.99793 * 3 2 1 29 29 H 1.09008 * 109.46643 * 287.82783 * 4 2 1 30 30 H 1.08996 * 109.47134 * 47.82819 * 4 2 1 31 31 H 1.08997 * 109.47347 * 167.83257 * 4 2 1 32 32 H 1.09001 * 109.47236 * 306.46126 * 5 2 1 33 33 H 1.09000 * 109.47291 * 186.45676 * 5 2 1 34 34 H 1.08998 * 109.47354 * 30.00305 * 7 6 5 35 35 H 1.08996 * 109.46919 * 150.00338 * 7 6 5 36 36 H 0.97000 * 120.00095 * 180.02562 * 11 10 8 37 37 H 1.07995 * 124.36897 * 359.97438 * 19 18 16 38 38 H 1.07990 * 121.02651 * 180.19553 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6827 -2.1400 1.1740 7 6 0.4169 -2.6078 1.7442 8 6 0.6281 -2.9967 3.1848 9 1 1.6072 -2.9043 3.6311 10 6 -0.4286 -3.4706 3.9330 11 7 -1.6208 -3.5836 3.3894 12 14 -0.1669 -3.9519 5.7188 13 1 -0.4026 -2.7721 6.5892 14 1 -1.1162 -5.0340 6.0839 15 1 1.2261 -4.4326 5.9029 16 6 2.5185 -3.0149 0.5803 17 8 2.1664 -4.1648 0.3984 18 6 3.8568 -2.5790 0.1524 19 6 4.8926 -3.3590 -0.3314 20 6 5.9951 -2.5931 -0.6326 21 7 5.9228 -1.3164 -0.4243 22 16 4.5174 -0.9364 0.1444 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.8643 -1.7922 -1.1476 30 1 1.5106 -0.3479 -2.1259 31 1 3.1081 -0.5375 -1.3643 32 1 1.5854 -0.2785 2.1355 33 1 3.1239 -0.6222 1.3088 34 1 -0.3237 -1.8100 1.6881 35 1 0.0630 -3.4723 1.1827 36 1 -2.3643 -3.9166 3.9159 37 1 4.8411 -4.4302 -0.4586 38 1 6.8947 -3.0430 -1.0257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120690129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = 14.250267 kcal Electronic energy + Delta-G solvation = -21111.749453 eV Core-core repulsion = 18081.619957 eV Total energy + Delta-G solvation = -3030.129495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80285 -38.86133 -37.00511 -34.05610 -32.53913 -31.30399 -28.18973 -27.33662 -26.97822 -26.10973 -25.21136 -23.10779 -20.94690 -19.48694 -18.62704 -17.82512 -16.66885 -16.28883 -15.62461 -15.43178 -15.01149 -14.50535 -14.37140 -14.00458 -13.68202 -13.23769 -13.03010 -12.73398 -12.46890 -12.19343 -12.09458 -11.61901 -11.50330 -11.38685 -11.13443 -11.07657 -10.88764 -10.84706 -10.64579 -10.42311 -10.21798 -9.85508 -9.62264 -9.40720 -9.25352 -8.48290 -8.35606 -7.78831 -6.10601 -4.15833 0.56643 1.46655 2.09085 2.45680 3.26681 3.33892 3.37393 3.61720 3.73275 4.39572 4.75304 4.87109 4.90096 5.12679 5.18697 5.23104 5.27528 5.45863 5.60240 5.67440 5.80063 5.84978 5.91118 5.98114 6.03320 6.06439 6.14384 6.22205 6.32206 6.47632 6.63922 6.71094 6.98061 7.32924 7.41491 7.85188 8.14862 8.19898 8.74950 8.92011 9.49465 10.97221 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.006576 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.636225 B = 4256.947707 C = 5041.602061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.162 4.162 5 C 0.118 3.882 6 N -0.584 5.584 7 C 0.244 3.756 8 C -0.533 4.533 9 H 0.058 0.942 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.586 3.414 17 O -0.525 6.525 18 C -0.257 4.257 19 C -0.127 4.127 20 C 0.055 3.945 21 N -0.570 5.570 22 S 0.445 5.555 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.171 0.829 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 8.947 -7.759 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.198 4.198 4 C -0.220 4.220 5 C -0.010 4.010 6 N -0.314 5.314 7 C 0.126 3.874 8 C -0.572 4.572 9 H 0.076 0.924 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.371 3.629 17 O -0.402 6.402 18 C -0.390 4.390 19 C -0.162 4.162 20 C -0.137 4.137 21 N -0.397 5.397 22 S 0.602 5.398 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.188 0.812 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.168 10.409 -7.611 15.822 hybrid contribution 0.307 -2.182 0.772 2.335 sum 9.475 8.227 -6.838 14.290 Atomic orbital electron populations 1.21950 0.93260 1.03334 1.01352 1.21004 0.97388 0.95308 0.95170 1.21881 1.00664 0.94947 1.02316 1.22539 1.00561 1.01453 0.97466 1.21907 0.97249 0.82780 0.99089 1.48087 1.22080 1.05960 1.55304 1.19504 0.78178 0.96449 0.93299 1.21447 0.95770 1.44136 0.95825 0.92381 1.24906 0.94982 0.95259 0.98702 1.69921 1.00342 1.46050 1.36744 0.86507 0.78180 0.78278 0.84553 1.20562 1.21034 1.19883 1.16691 0.82099 0.85534 0.78535 1.90794 1.75430 1.18154 1.55850 1.27294 1.01064 1.00462 1.10214 1.22055 0.91386 1.02655 1.00129 1.22082 1.00588 0.87827 1.03160 1.72056 1.25708 1.20085 1.21895 1.82335 0.97549 1.09358 1.50520 0.92208 0.93113 0.91103 0.92679 0.92194 0.92000 0.91831 0.92131 0.92369 0.88121 0.92657 0.93659 0.93460 0.92612 0.81200 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.53 37.15 0.28 -1.73 16 2 C -0.09 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.14 -1.45 8.40 37.16 0.31 -1.14 16 4 C -0.16 -2.22 6.99 37.16 0.26 -1.96 16 5 C 0.12 1.87 4.36 -4.04 -0.02 1.85 16 6 N -0.58 -11.90 1.98 -176.45 -0.35 -12.25 16 7 C 0.24 6.02 4.34 -5.19 -0.02 6.00 16 8 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 12 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.59 12.29 5.66 -12.66 -0.07 12.21 16 17 O -0.52 -13.06 16.52 5.25 0.09 -12.97 16 18 C -0.26 -4.33 5.43 -35.93 -0.20 -4.53 16 19 C -0.13 -1.87 10.41 -39.77 -0.41 -2.28 16 20 C 0.06 0.72 11.15 -18.75 -0.21 0.51 16 21 N -0.57 -8.18 11.29 21.64 0.24 -7.94 16 22 S 0.45 6.17 14.00 -107.50 -1.51 4.66 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.21 5.95 -51.93 -0.31 0.90 16 26 H 0.05 0.53 7.07 -51.93 -0.37 0.16 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.05 5.18 -51.92 -0.27 0.78 16 30 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.06 0.75 4.78 -29.73 -0.14 0.61 16 32 H 0.10 1.60 8.06 -51.93 -0.42 1.18 16 33 H 0.06 0.82 3.45 -19.23 -0.07 0.75 16 34 H 0.05 1.10 6.06 -51.93 -0.31 0.79 16 35 H 0.05 1.33 7.33 -51.93 -0.38 0.95 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.17 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -31.46 308.42 -6.52 -37.98 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.77 Total: -0.07 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.59 Total: -5.52 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.63 Total: -45.03 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.51 Total: 4.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.46 -6.52 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120690129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.232 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds