Wall clock time and date at job start Tue Mar 31 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 C 1.53003 * 109.46990 * 240.00248 * 2 1 3 5 5 C 1.52999 * 109.47467 * 119.99954 * 2 1 3 6 6 N 1.46504 * 109.46835 * 66.45962 * 5 2 1 7 7 C 1.46499 * 119.99831 * 269.04517 * 6 5 2 8 8 C 1.50699 * 109.47169 * 269.99922 * 7 6 5 9 9 H 1.07995 * 120.00254 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00070 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99799 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47259 * 90.00055 * 12 10 8 14 14 H 1.48504 * 109.46779 * 210.00053 * 12 10 8 15 15 H 1.48505 * 109.47167 * 329.99680 * 12 10 8 16 16 C 1.34778 * 119.99924 * 89.04954 * 6 5 2 17 17 O 1.21630 * 119.99877 * 187.33064 * 16 6 5 18 18 C 1.47107 * 119.99814 * 7.33395 * 16 6 5 19 19 C 1.38389 * 127.99286 * 172.21217 * 18 16 6 20 20 C 1.37578 * 111.26062 * 179.82269 * 19 18 16 21 21 N 1.29562 * 117.94420 * 0.50536 * 20 19 18 22 22 S 1.56304 * 110.38156 * 359.71064 * 21 20 19 23 23 H 1.09007 * 109.47140 * 299.99757 * 1 2 3 24 24 H 1.09000 * 109.47425 * 59.99685 * 1 2 3 25 25 H 1.08995 * 109.47404 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47121 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46848 * 300.00450 * 3 2 1 28 28 H 1.08996 * 109.47211 * 59.99793 * 3 2 1 29 29 H 1.09008 * 109.46643 * 287.82783 * 4 2 1 30 30 H 1.08996 * 109.47134 * 47.82819 * 4 2 1 31 31 H 1.08997 * 109.47347 * 167.83257 * 4 2 1 32 32 H 1.09001 * 109.47236 * 306.46126 * 5 2 1 33 33 H 1.09000 * 109.47291 * 186.45676 * 5 2 1 34 34 H 1.08998 * 109.47354 * 30.00305 * 7 6 5 35 35 H 1.08996 * 109.46919 * 150.00338 * 7 6 5 36 36 H 0.97000 * 120.00095 * 180.02562 * 11 10 8 37 37 H 1.07995 * 124.36897 * 359.97438 * 19 18 16 38 38 H 1.07990 * 121.02651 * 180.19553 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.6827 -2.1400 1.1740 7 6 0.4169 -2.6078 1.7442 8 6 0.6281 -2.9967 3.1848 9 1 1.6072 -2.9043 3.6311 10 6 -0.4286 -3.4706 3.9330 11 7 -1.6208 -3.5836 3.3894 12 14 -0.1669 -3.9519 5.7188 13 1 -0.4026 -2.7721 6.5892 14 1 -1.1162 -5.0340 6.0839 15 1 1.2261 -4.4326 5.9029 16 6 2.5185 -3.0149 0.5803 17 8 2.1664 -4.1648 0.3984 18 6 3.8568 -2.5790 0.1524 19 6 4.8926 -3.3590 -0.3314 20 6 5.9951 -2.5931 -0.6326 21 7 5.9228 -1.3164 -0.4243 22 16 4.5174 -0.9364 0.1444 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.8643 -1.7922 -1.1476 30 1 1.5106 -0.3479 -2.1259 31 1 3.1081 -0.5375 -1.3643 32 1 1.5854 -0.2785 2.1355 33 1 3.1239 -0.6222 1.3088 34 1 -0.3237 -1.8100 1.6881 35 1 0.0630 -3.4723 1.1827 36 1 -2.3643 -3.9166 3.9159 37 1 4.8411 -4.4302 -0.4586 38 1 6.8947 -3.0430 -1.0257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120690129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:02 Heat of formation + Delta-G solvation = -5.819559 kcal Electronic energy + Delta-G solvation = -21112.619746 eV Core-core repulsion = 18081.619957 eV Total energy + Delta-G solvation = -3030.999788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30139 -40.02538 -38.41483 -35.79464 -34.42312 -32.64202 -29.91951 -28.50035 -28.12466 -27.35943 -26.71132 -24.81355 -22.40700 -20.75412 -19.87448 -19.18560 -18.68023 -17.61250 -17.19487 -16.87888 -16.55838 -15.95906 -15.57745 -15.43519 -14.99304 -14.54520 -14.35349 -14.17935 -14.12374 -13.62466 -13.26973 -13.13816 -12.88758 -12.74185 -12.61333 -12.51884 -12.39058 -12.17533 -12.11910 -11.88866 -11.72209 -11.60691 -11.06077 -10.84243 -10.68405 -10.60935 -9.49814 -9.45507 -8.22596 -6.37147 -0.68733 0.25563 0.94853 1.30888 1.37388 1.39924 1.49866 2.06039 2.20134 2.40574 3.07423 3.44021 3.70893 3.75604 4.00138 4.07848 4.13760 4.28486 4.49645 4.63401 4.72680 4.75768 4.82645 4.91573 4.93833 5.01283 5.04821 5.09965 5.16197 5.22166 5.33104 5.39539 5.52588 5.55661 5.60500 5.79066 6.05256 6.55314 6.71026 7.15929 7.35312 8.84288 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.006576 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.636225 B = 4256.947707 C = 5041.602061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.158 4.158 5 C 0.111 3.889 6 N -0.586 5.586 7 C 0.263 3.737 8 C -0.550 4.550 9 H 0.052 0.948 10 C 0.014 3.986 11 N -0.924 5.924 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.583 3.417 17 O -0.583 6.583 18 C -0.299 4.299 19 C -0.117 4.117 20 C 0.064 3.936 21 N -0.574 5.574 22 S 0.491 5.509 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.045 0.955 35 H -0.001 1.001 36 H 0.268 0.732 37 H 0.177 0.823 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 11.035 -7.716 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.193 4.193 4 C -0.216 4.216 5 C -0.016 4.016 6 N -0.315 5.315 7 C 0.143 3.857 8 C -0.589 4.589 9 H 0.071 0.929 10 C -0.186 4.186 11 N -0.563 5.563 12 Si 0.788 3.212 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.200 1.200 16 C 0.371 3.629 17 O -0.465 6.465 18 C -0.432 4.432 19 C -0.153 4.153 20 C -0.127 4.127 21 N -0.402 5.402 22 S 0.649 5.351 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.194 0.806 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.372 12.563 -7.567 18.558 hybrid contribution -0.321 -2.819 0.678 2.918 sum 11.051 9.744 -6.889 16.264 Atomic orbital electron populations 1.21916 0.94127 1.01100 1.02570 1.21005 0.96648 0.97162 0.93551 1.21870 1.01361 0.92241 1.03852 1.22502 1.01493 0.99310 0.98305 1.22230 0.98501 0.80212 1.00626 1.47981 1.20733 1.08020 1.54794 1.18950 0.80293 0.94671 0.91780 1.21734 0.95610 1.44495 0.97023 0.92928 1.25767 0.94651 0.95026 1.03116 1.70035 1.01142 1.46663 1.38441 0.85478 0.77833 0.78464 0.79437 1.18689 1.20667 1.19979 1.17185 0.83422 0.84751 0.77553 1.90739 1.76980 1.20500 1.58247 1.26928 0.99674 1.03492 1.13108 1.22345 0.91192 1.03265 0.98493 1.22445 1.01105 0.87115 1.02072 1.72107 1.25424 1.20713 1.21999 1.81944 0.96727 1.06733 1.49698 0.92106 0.90763 0.95000 0.91527 0.90331 0.90933 0.95263 0.90433 0.91249 0.88276 0.90998 0.93684 0.98255 0.92325 0.80605 0.77314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 7.53 71.98 0.54 -3.41 16 2 C -0.08 -2.11 0.60 -52.18 -0.03 -2.14 16 3 C -0.14 -2.36 8.40 71.98 0.60 -1.76 16 4 C -0.16 -4.18 6.99 71.98 0.50 -3.68 16 5 C 0.11 3.49 4.36 86.38 0.38 3.87 16 6 N -0.59 -25.02 1.98 -830.41 -1.65 -26.66 16 7 C 0.26 13.85 4.34 85.63 0.37 14.22 16 8 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 9 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 10 C 0.01 0.79 5.46 84.66 0.46 1.26 16 11 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 12 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 13 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.58 25.63 5.66 86.57 0.49 26.12 16 17 O -0.58 -31.10 16.52 -4.13 -0.07 -31.17 16 18 C -0.30 -10.04 5.43 24.64 0.13 -9.91 16 19 C -0.12 -3.28 10.41 22.15 0.23 -3.05 16 20 C 0.06 1.45 11.15 84.87 0.95 2.40 16 21 N -0.57 -14.53 11.29 -85.46 -0.96 -15.50 16 22 S 0.49 12.45 14.00 -56.49 -0.79 11.66 16 23 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.14 5.95 -2.39 -0.01 1.12 16 26 H 0.07 1.02 7.07 -2.39 -0.02 1.00 16 27 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.98 5.18 -2.38 -0.01 0.97 16 30 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 31 H 0.07 1.64 4.78 -16.51 -0.08 1.56 16 32 H 0.10 3.14 8.06 -2.39 -0.02 3.12 16 33 H 0.07 2.02 3.45 -23.18 -0.08 1.94 16 34 H 0.05 2.34 6.06 -2.39 -0.01 2.32 16 35 H 0.00 -0.04 7.33 -2.39 -0.02 -0.06 16 36 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.21 3.08 8.06 -2.92 -0.02 3.05 16 Total: -1.00 -71.76 308.42 4.64 -67.12 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.93 Total: 9.65 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.87 Total: -6.99 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -2.33 Total: -96.51 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.07 Total: -31.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 12.45 SS G_CDS: -0.79 Total: 11.66 kcal Total: -71.76 4.64 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120690129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.304 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds