Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35310 * 120.37331 * 2 1 4 4 N 1.35486 * 120.69361 * 179.97438 * 3 2 1 5 5 H 0.97000 * 119.27063 * 179.97438 * 4 3 2 6 6 C 1.35486 * 121.45825 * 359.97438 * 4 3 2 7 7 C 1.35303 * 120.69622 * 359.73106 * 6 4 3 8 8 C 1.41323 * 119.24989 * 0.52132 * 7 6 4 9 9 N 1.34359 * 120.67741 * 179.76630 * 8 7 6 10 10 C 1.33215 * 119.99544 * 5.27244 * 9 8 7 11 11 O 1.22046 * 119.99845 * 65.27687 * 10 9 8 12 12 C 1.47765 * 120.00001 * 245.27383 * 10 9 8 13 13 C 1.39128 * 120.27587 * 354.47797 * 12 10 9 14 14 C 1.38183 * 120.10649 * 180.29745 * 13 12 10 15 15 C 1.38860 * 120.66790 * 359.44658 * 14 13 12 16 16 C 1.37525 * 120.55719 * 0.55935 * 15 14 13 17 17 C 1.40748 * 119.86922 * 359.71859 * 16 15 14 18 18 C 1.40882 * 120.32710 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99875 * 139.02919 * 18 17 16 20 20 C 1.40225 * 120.00049 * 319.03115 * 18 17 16 21 21 N 1.30660 * 120.00001 * 176.67239 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 356.66892 * 20 18 17 23 23 H 1.48506 * 109.46746 * 90.26606 * 22 20 18 24 24 H 1.48498 * 109.47122 * 210.26262 * 22 20 18 25 25 H 1.48500 * 109.47401 * 330.26537 * 22 20 18 26 26 H 1.09002 * 109.47543 * 270.02505 * 1 2 3 27 27 H 1.08995 * 109.47347 * 30.02223 * 1 2 3 28 28 H 1.09001 * 109.47148 * 150.02488 * 1 2 3 29 29 H 1.07998 * 119.64923 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.64807 * 179.97438 * 6 4 3 31 31 H 1.08004 * 120.37619 * 180.28152 * 7 6 4 32 32 H 1.08006 * 119.94392 * 0.02562 * 13 12 10 33 33 H 1.08001 * 119.66348 * 179.72426 * 14 13 12 34 34 H 1.08006 * 119.72518 * 180.30282 * 15 14 13 35 35 H 1.08002 * 120.06787 * 179.74821 * 16 15 14 36 36 H 0.96993 * 120.00126 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1674 0.0000 4 7 3.5460 1.1750 0.0005 5 1 4.0155 2.0237 0.0001 6 6 4.2595 0.0232 0.0016 7 6 3.6342 -1.1767 0.0076 8 6 2.2216 -1.2192 0.0016 9 7 1.5713 -2.3949 0.0026 10 6 2.2537 -3.5334 0.1153 11 8 2.8627 -3.7806 1.1437 12 6 2.2732 -4.4971 -1.0047 13 6 1.4903 -4.2766 -2.1334 14 6 1.5066 -5.1832 -3.1762 15 6 2.3086 -6.3153 -3.1180 16 6 3.0932 -6.5603 -2.0154 17 6 3.0901 -5.6551 -0.9377 18 6 3.8905 -5.8964 0.1963 19 1 4.4217 -5.0815 0.6656 20 6 3.9975 -7.1945 0.7157 21 7 4.7904 -7.4302 1.7271 22 14 3.0064 -8.5868 -0.0384 23 1 3.7969 -9.2278 -1.1200 24 1 2.6914 -9.5930 1.0073 25 1 1.7433 -8.0466 -0.6021 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6515 2.1029 -0.0004 30 1 5.3387 0.0634 0.0015 31 1 4.2081 -2.0916 0.0130 32 1 0.8655 -3.3976 -2.1929 33 1 0.8926 -5.0072 -4.0471 34 1 2.3132 -7.0113 -3.9438 35 1 3.7110 -7.4454 -1.9768 36 1 4.8642 -8.3280 2.0866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136675832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = 47.517688 kcal Electronic energy + Delta-G solvation = -21263.547242 eV Core-core repulsion = 18099.416379 eV Total energy + Delta-G solvation = -3164.130863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57139 -38.62909 -36.89451 -34.77866 -33.48322 -32.78416 -30.78724 -30.31040 -29.50104 -27.09337 -25.38907 -23.95721 -22.23200 -21.85153 -20.74420 -18.95768 -18.47100 -17.36331 -16.76710 -16.19535 -15.40325 -14.84230 -14.64331 -14.43404 -13.89994 -13.86377 -13.45532 -13.04616 -12.96812 -12.77666 -12.61228 -12.42720 -12.07704 -11.79152 -11.49309 -11.30265 -10.85948 -10.80550 -10.47619 -10.29306 -10.08763 -9.66203 -9.37558 -9.20108 -9.11664 -8.07139 -7.65314 -7.43553 -7.03102 -6.73820 -4.33050 1.23902 1.46414 2.21100 2.74546 2.94202 3.18061 3.25910 3.39820 3.61199 4.04999 4.09325 4.51120 4.68577 4.72693 5.07431 5.22244 5.27792 5.50229 5.64811 5.81872 5.89046 5.96308 6.04136 6.15951 6.24451 6.30407 6.48280 6.65665 6.73072 6.89361 6.92912 6.98594 7.23673 7.30092 7.44472 7.59065 7.76748 7.94374 8.17367 8.46845 8.65895 8.74395 8.93665 9.44016 10.25484 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.005398 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.546788 B = 5185.481246 C = 5813.684377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.158 4.158 3 C 0.105 3.895 4 N -0.597 5.597 5 H 0.415 0.585 6 C 0.117 3.883 7 C -0.235 4.235 8 C 0.289 3.711 9 N -0.604 5.604 10 C 0.529 3.471 11 O -0.506 6.506 12 C -0.241 4.241 13 C -0.027 4.027 14 C -0.254 4.254 15 C -0.067 4.067 16 C -0.227 4.227 17 C 0.116 3.884 18 C -0.402 4.402 19 H 0.108 0.892 20 C 0.080 3.920 21 N -0.807 5.807 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.242 1.242 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 17.713 -5.072 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.167 4.167 3 C -0.024 4.024 4 N -0.202 5.202 5 H 0.250 0.750 6 C -0.012 4.012 7 C -0.262 4.262 8 C 0.124 3.876 9 N -0.336 5.336 10 C 0.322 3.678 11 O -0.384 6.384 12 C -0.246 4.246 13 C -0.046 4.046 14 C -0.273 4.273 15 C -0.086 4.086 16 C -0.246 4.246 17 C 0.112 3.888 18 C -0.430 4.430 19 H 0.125 0.875 20 C -0.138 4.138 21 N -0.432 5.432 22 Si 0.731 3.269 23 H -0.195 1.195 24 H -0.218 1.218 25 H -0.165 1.165 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.180 0.820 30 H 0.179 0.821 31 H 0.164 0.836 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.566 16.842 -4.324 17.577 hybrid contribution 0.543 -0.597 -0.261 0.848 sum -2.024 16.245 -4.585 17.000 Atomic orbital electron populations 1.20380 0.89329 1.02642 1.02087 1.19304 0.97277 0.90151 1.09947 1.21464 0.82769 0.99488 0.98700 1.40816 1.05718 1.08927 1.64787 0.75000 1.21633 0.97456 0.85388 0.96721 1.21847 0.95804 0.98152 1.10430 1.18570 0.89438 0.91209 0.88382 1.68546 1.37362 0.98392 1.29306 1.19384 0.74705 0.86379 0.87332 1.90856 1.37482 1.79889 1.30133 1.19831 1.06201 1.02194 0.96396 1.20906 0.94878 0.96530 0.92261 1.20383 1.07727 0.98791 1.00438 1.20740 0.95136 0.96079 0.96647 1.21150 1.05547 1.02658 0.95252 1.17696 0.88791 0.89850 0.92461 1.19749 1.20090 0.95134 1.07994 0.87466 1.26188 0.93792 0.99566 0.94271 1.69549 1.30180 1.23419 1.20089 0.86433 0.82667 0.79502 0.78310 1.19543 1.21750 1.16510 0.91797 0.92577 0.90073 0.82018 0.82083 0.83617 0.87783 0.88617 0.88655 0.87889 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.81 36.00 0.35 -0.66 16 2 C -0.16 -2.07 5.89 -104.49 -0.62 -2.69 16 3 C 0.10 0.86 10.82 -16.98 -0.18 0.68 16 4 N -0.60 -4.19 5.24 -13.04 -0.07 -4.26 16 5 H 0.42 1.06 8.90 -40.82 -0.36 0.69 16 6 C 0.12 1.21 11.17 -16.98 -0.19 1.02 16 7 C -0.23 -3.91 9.06 -39.46 -0.36 -4.26 16 8 C 0.29 5.26 6.57 -84.41 -0.55 4.70 16 9 N -0.60 -13.62 8.71 -11.05 -0.10 -13.72 16 10 C 0.53 13.98 5.80 -13.06 -0.08 13.91 16 11 O -0.51 -15.00 13.79 4.88 0.07 -14.93 16 12 C -0.24 -6.42 5.93 -104.28 -0.62 -7.03 16 13 C -0.03 -0.64 9.57 -39.27 -0.38 -1.01 16 14 C -0.25 -5.59 10.03 -39.37 -0.39 -5.98 16 15 C -0.07 -1.52 10.01 -39.61 -0.40 -1.92 16 16 C -0.23 -5.75 6.87 -38.89 -0.27 -6.02 16 17 C 0.12 3.24 4.99 -106.56 -0.53 2.71 16 18 C -0.40 -11.97 7.98 -37.84 -0.30 -12.27 16 19 H 0.11 3.47 6.51 -52.49 -0.34 3.13 16 20 C 0.08 2.28 5.51 -17.30 -0.10 2.18 16 21 N -0.81 -23.29 13.92 55.56 0.77 -22.52 16 22 Si 0.90 22.26 24.53 -169.99 -4.17 18.09 16 23 H -0.27 -6.24 6.82 56.52 0.39 -5.85 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.24 -6.16 6.55 56.52 0.37 -5.79 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.08 1.15 7.57 -51.93 -0.39 0.76 16 29 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 2.93 6.73 -52.48 -0.35 2.58 16 32 H 0.10 2.25 7.55 -52.48 -0.40 1.86 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 35 H 0.10 2.54 5.10 -52.49 -0.27 2.27 16 36 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -37.84 305.77 -7.32 -45.16 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.83 Total: 4.22 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -4.61 Total: -16.65 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.61 Total: -40.49 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.17 Total: 18.09 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.84 -7.32 -45.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136675832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.679 kcal (2) G-P(sol) polarization free energy of solvation -37.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds