Wall clock time and date at job start Tue Mar 31 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35310 * 120.37331 * 2 1 4 4 N 1.35486 * 120.69361 * 179.97438 * 3 2 1 5 5 H 0.97000 * 119.27063 * 179.97438 * 4 3 2 6 6 C 1.35486 * 121.45825 * 359.97438 * 4 3 2 7 7 C 1.35303 * 120.69622 * 359.73106 * 6 4 3 8 8 C 1.41323 * 119.24989 * 0.52132 * 7 6 4 9 9 N 1.34359 * 120.67741 * 179.76630 * 8 7 6 10 10 C 1.33215 * 119.99544 * 5.27244 * 9 8 7 11 11 O 1.22046 * 119.99845 * 65.27687 * 10 9 8 12 12 C 1.47765 * 120.00001 * 245.27383 * 10 9 8 13 13 C 1.39128 * 120.27587 * 354.47797 * 12 10 9 14 14 C 1.38183 * 120.10649 * 180.29745 * 13 12 10 15 15 C 1.38860 * 120.66790 * 359.44658 * 14 13 12 16 16 C 1.37525 * 120.55719 * 0.55935 * 15 14 13 17 17 C 1.40748 * 119.86922 * 359.71859 * 16 15 14 18 18 C 1.40882 * 120.32710 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99875 * 139.02919 * 18 17 16 20 20 C 1.40225 * 120.00049 * 319.03115 * 18 17 16 21 21 N 1.30660 * 120.00001 * 176.67239 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 356.66892 * 20 18 17 23 23 H 1.48506 * 109.46746 * 90.26606 * 22 20 18 24 24 H 1.48498 * 109.47122 * 210.26262 * 22 20 18 25 25 H 1.48500 * 109.47401 * 330.26537 * 22 20 18 26 26 H 1.09002 * 109.47543 * 270.02505 * 1 2 3 27 27 H 1.08995 * 109.47347 * 30.02223 * 1 2 3 28 28 H 1.09001 * 109.47148 * 150.02488 * 1 2 3 29 29 H 1.07998 * 119.64923 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.64807 * 179.97438 * 6 4 3 31 31 H 1.08004 * 120.37619 * 180.28152 * 7 6 4 32 32 H 1.08006 * 119.94392 * 0.02562 * 13 12 10 33 33 H 1.08001 * 119.66348 * 179.72426 * 14 13 12 34 34 H 1.08006 * 119.72518 * 180.30282 * 15 14 13 35 35 H 1.08002 * 120.06787 * 179.74821 * 16 15 14 36 36 H 0.96993 * 120.00126 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1674 0.0000 4 7 3.5460 1.1750 0.0005 5 1 4.0155 2.0237 0.0001 6 6 4.2595 0.0232 0.0016 7 6 3.6342 -1.1767 0.0076 8 6 2.2216 -1.2192 0.0016 9 7 1.5713 -2.3949 0.0026 10 6 2.2537 -3.5334 0.1153 11 8 2.8627 -3.7806 1.1437 12 6 2.2732 -4.4971 -1.0047 13 6 1.4903 -4.2766 -2.1334 14 6 1.5066 -5.1832 -3.1762 15 6 2.3086 -6.3153 -3.1180 16 6 3.0932 -6.5603 -2.0154 17 6 3.0901 -5.6551 -0.9377 18 6 3.8905 -5.8964 0.1963 19 1 4.4217 -5.0815 0.6656 20 6 3.9975 -7.1945 0.7157 21 7 4.7904 -7.4302 1.7271 22 14 3.0064 -8.5868 -0.0384 23 1 3.7969 -9.2278 -1.1200 24 1 2.6914 -9.5930 1.0073 25 1 1.7433 -8.0466 -0.6021 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6515 2.1029 -0.0004 30 1 5.3387 0.0634 0.0015 31 1 4.2081 -2.0916 0.0130 32 1 0.8655 -3.3976 -2.1929 33 1 0.8926 -5.0072 -4.0471 34 1 2.3132 -7.0113 -3.9438 35 1 3.7110 -7.4454 -1.9768 36 1 4.8642 -8.3280 2.0866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136675832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:51 Heat of formation + Delta-G solvation = 16.941463 kcal Electronic energy + Delta-G solvation = -21264.873127 eV Core-core repulsion = 18099.416379 eV Total energy + Delta-G solvation = -3165.456747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69903 -40.39072 -38.70423 -36.15356 -35.47400 -33.92423 -32.42708 -32.22557 -31.09829 -28.07521 -27.31374 -25.42400 -23.68460 -23.26570 -22.56387 -20.47074 -19.49158 -19.42604 -18.15245 -17.48741 -17.30969 -16.60206 -15.92659 -15.77816 -15.58585 -15.42433 -15.06846 -14.87360 -14.48945 -14.28579 -13.82458 -13.68993 -13.67774 -13.34313 -13.07667 -12.76074 -12.60545 -12.36836 -12.23418 -12.06153 -11.94081 -11.63264 -11.13459 -10.91003 -10.33186 -9.85877 -9.55241 -9.41736 -8.81138 -8.33050 -6.48456 0.04049 0.36688 0.43199 0.80012 1.18817 1.32164 1.42527 2.00852 2.10333 2.11013 2.61247 2.73754 3.42332 3.58106 3.77525 4.03563 4.15048 4.20323 4.27632 4.34305 4.50509 4.63936 4.78262 4.84873 4.89528 4.96859 5.01951 5.12234 5.26042 5.32016 5.46612 5.64912 5.69279 5.72466 5.86769 5.89970 6.00533 6.26310 6.38484 6.43352 6.72369 6.76350 7.00385 7.71850 8.25971 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.005398 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.546788 B = 5185.481246 C = 5813.684377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.202 4.202 3 C 0.161 3.839 4 N -0.556 5.556 5 H 0.450 0.550 6 C 0.178 3.822 7 C -0.306 4.306 8 C 0.286 3.714 9 N -0.673 5.673 10 C 0.533 3.467 11 O -0.573 6.573 12 C -0.265 4.265 13 C -0.033 4.033 14 C -0.229 4.229 15 C -0.062 4.062 16 C -0.241 4.241 17 C 0.096 3.904 18 C -0.442 4.442 19 H 0.052 0.948 20 C 0.033 3.967 21 N -0.861 5.861 22 Si 0.967 3.033 23 H -0.238 1.238 24 H -0.278 1.278 25 H -0.256 1.256 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.044 0.956 29 H 0.234 0.766 30 H 0.208 0.792 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 22.029 -8.474 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.211 4.211 3 C 0.029 3.971 4 N -0.161 5.161 5 H 0.292 0.708 6 C 0.045 3.955 7 C -0.334 4.334 8 C 0.131 3.869 9 N -0.412 5.412 10 C 0.327 3.673 11 O -0.455 6.455 12 C -0.270 4.270 13 C -0.052 4.052 14 C -0.248 4.248 15 C -0.080 4.080 16 C -0.260 4.260 17 C 0.092 3.908 18 C -0.472 4.472 19 H 0.070 0.930 20 C -0.179 4.179 21 N -0.489 5.489 22 Si 0.789 3.211 23 H -0.163 1.163 24 H -0.205 1.205 25 H -0.180 1.180 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.250 0.750 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.769 21.308 -7.762 22.989 hybrid contribution 0.933 -1.193 0.644 1.646 sum -2.837 20.115 -7.117 21.525 Atomic orbital electron populations 1.20325 0.88471 1.03096 1.01878 1.19545 0.98409 0.89540 1.13570 1.22401 0.82730 1.00195 0.91731 1.41208 1.06032 1.09538 1.59275 0.70767 1.22048 0.99395 0.84115 0.89936 1.21540 0.95531 0.98986 1.17345 1.19314 0.90502 0.91851 0.85258 1.68286 1.35444 0.98293 1.39148 1.19710 0.73254 0.88125 0.86235 1.90777 1.41003 1.81398 1.32357 1.20408 1.06416 1.02117 0.98054 1.21148 0.94484 0.97750 0.91776 1.20990 1.06119 0.97052 1.00620 1.21262 0.93350 0.96773 0.96606 1.21288 1.06726 1.02470 0.95521 1.17958 0.88831 0.91320 0.92678 1.19501 1.23074 0.94579 1.10080 0.92993 1.26984 0.94791 1.01509 0.94595 1.69608 1.32795 1.24395 1.22101 0.85512 0.80549 0.76551 0.78491 1.16262 1.20512 1.18003 0.92431 0.87923 0.93733 0.75001 0.77532 0.89131 0.86224 0.83847 0.83761 0.87411 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.81 71.23 0.70 -1.04 16 2 C -0.20 -4.84 5.89 -19.78 -0.12 -4.96 16 3 C 0.16 1.56 10.82 83.45 0.90 2.46 16 4 N -0.56 -3.95 5.24 -195.17 -1.02 -4.97 16 5 H 0.45 -1.82 8.90 -92.71 -0.82 -2.64 16 6 C 0.18 3.09 11.17 83.45 0.93 4.03 16 7 C -0.31 -10.80 9.06 22.35 0.20 -10.60 16 8 C 0.29 10.95 6.57 40.28 0.26 11.21 16 9 N -0.67 -33.36 8.71 -307.82 -2.68 -36.04 16 10 C 0.53 31.57 5.80 87.01 0.50 32.08 16 11 O -0.57 -39.01 13.79 -5.47 -0.08 -39.09 16 12 C -0.27 -15.23 5.93 -19.64 -0.12 -15.35 16 13 C -0.03 -1.58 9.57 22.47 0.21 -1.37 16 14 C -0.23 -9.44 10.03 22.41 0.22 -9.22 16 15 C -0.06 -2.63 10.01 22.25 0.22 -2.40 16 16 C -0.24 -12.36 6.87 22.72 0.16 -12.21 16 17 C 0.10 5.74 4.99 -21.12 -0.11 5.64 16 18 C -0.44 -29.48 7.98 23.40 0.19 -29.29 16 19 H 0.05 3.91 6.51 -2.91 -0.02 3.89 16 20 C 0.03 2.03 5.51 85.35 0.47 2.50 16 21 N -0.86 -54.44 13.92 21.87 0.30 -54.14 16 22 Si 0.97 48.19 24.53 68.60 1.68 49.87 16 23 H -0.24 -10.55 6.82 99.48 0.68 -9.88 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.26 -13.16 6.55 99.48 0.65 -12.50 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 28 H 0.04 1.29 7.57 -2.39 -0.02 1.28 16 29 H 0.23 -0.67 8.06 -2.91 -0.02 -0.69 16 30 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.09 4.25 6.73 -2.91 -0.02 4.23 16 32 H 0.12 5.28 7.55 -2.91 -0.02 5.26 16 33 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.11 5.33 5.10 -2.91 -0.01 5.32 16 36 H 0.29 16.45 8.29 -92.71 -0.77 15.68 16 Total: -1.00 -104.85 305.77 3.07 -101.78 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.22 Total: 11.10 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 4.64 Total: -28.52 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.40 Total: -95.15 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.08 Total: -39.09 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.68 Total: 49.87 kcal Total: -104.85 3.07 -101.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136675832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.722 kcal (2) G-P(sol) polarization free energy of solvation -104.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds