Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 C 1.53002 * 109.46840 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.36894 * 120.00119 * 269.99902 * 5 4 3 7 7 H 1.08001 * 119.99954 * 131.18744 * 6 5 4 8 8 C 1.39011 * 119.99768 * 311.18427 * 6 5 4 9 9 N 1.31393 * 119.99746 * 172.79351 * 8 6 5 10 10 Si 1.86798 * 119.99961 * 352.79377 * 8 6 5 11 11 H 1.48505 * 109.47043 * 94.97481 * 10 8 6 12 12 H 1.48495 * 109.47299 * 214.97402 * 10 8 6 13 13 H 1.48504 * 109.47426 * 334.97545 * 10 8 6 14 14 C 1.34781 * 120.00188 * 89.99735 * 5 4 3 15 15 O 1.21730 * 119.99755 * 3.72738 * 14 5 4 16 16 C 1.46557 * 120.00301 * 183.99872 * 14 5 4 17 17 S 1.76218 * 126.17846 * 352.80815 * 16 14 5 18 18 C 1.70922 * 90.37523 * 179.97438 * 17 16 14 19 19 C 1.50694 * 124.70267 * 180.02562 * 18 17 16 20 20 N 1.29378 * 110.59211 * 0.32233 * 18 17 16 21 21 C 1.30938 * 117.47144 * 359.74437 * 20 18 17 22 22 C 1.50704 * 123.04370 * 180.02562 * 21 20 18 23 23 H 1.08996 * 109.47121 * 60.00078 * 1 2 3 24 24 H 1.08994 * 109.46762 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46970 * 299.99891 * 1 2 3 26 26 H 1.09003 * 109.47216 * 240.00581 * 2 1 3 27 27 H 1.08996 * 109.47121 * 119.99922 * 2 1 3 28 28 H 1.08998 * 109.47346 * 59.99957 * 3 2 1 29 29 H 1.09004 * 109.46994 * 299.99644 * 3 2 1 30 30 H 1.08998 * 109.47508 * 59.99662 * 4 3 2 31 31 H 1.08996 * 109.46807 * 299.99719 * 4 3 2 32 32 H 0.96998 * 119.99674 * 185.00777 * 9 8 6 33 33 H 1.08995 * 109.47190 * 270.31190 * 19 18 17 34 34 H 1.08994 * 109.47156 * 30.31649 * 19 18 17 35 35 H 1.09000 * 109.47066 * 150.31408 * 19 18 17 36 36 H 1.09005 * 109.46828 * 269.98001 * 22 21 20 37 37 H 1.09002 * 109.46794 * 29.97579 * 22 21 20 38 38 H 1.08998 * 109.47334 * 149.97846 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2859 3.4688 -1.1871 7 1 3.8900 4.4608 -1.3469 8 6 5.0268 2.8469 -2.1855 9 7 5.1267 3.4023 -3.3720 10 14 5.8802 1.2215 -1.8401 11 1 5.0094 0.1019 -2.2799 12 1 7.1655 1.1698 -2.5821 13 1 6.1443 1.1006 -0.3838 14 6 4.2833 3.4596 1.1657 15 8 4.1461 2.8650 2.2190 16 6 4.6875 4.8683 1.1666 17 16 5.0980 5.8337 -0.2493 18 6 5.3926 7.1906 0.7474 19 6 5.8271 8.5442 0.2475 20 7 5.1968 6.8928 1.9911 21 6 4.8204 5.6695 2.2673 22 6 4.5570 5.1878 3.6708 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 3.9330 0.9288 -0.8908 31 1 3.9336 0.9286 0.8891 32 1 5.5819 2.9347 -4.0896 33 1 6.9157 8.5870 0.2143 34 1 5.4264 8.7078 -0.7528 35 1 5.4535 9.3168 0.9194 36 1 5.4775 4.7883 4.0965 37 1 4.2058 6.0201 4.2806 38 1 3.7972 4.4065 3.6502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147241402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -7.053207 kcal Electronic energy + Delta-G solvation = -20515.179858 eV Core-core repulsion = 17484.126574 eV Total energy + Delta-G solvation = -3031.053283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42925 -38.45933 -35.63693 -34.20720 -32.26944 -32.11394 -29.22592 -28.61853 -27.15328 -25.04633 -23.50887 -22.14598 -20.88778 -20.24253 -18.71835 -17.30187 -16.66187 -16.12869 -15.12589 -14.82010 -14.74492 -14.36190 -13.98723 -13.68159 -13.29832 -12.94794 -12.86547 -12.67687 -12.62797 -12.35266 -12.05057 -11.79516 -11.69401 -11.53641 -11.45315 -11.35630 -10.78403 -10.74726 -10.59709 -10.31721 -10.19597 -9.92785 -9.49516 -8.88090 -8.62087 -8.48010 -8.01571 -7.64970 -6.70156 -4.51827 1.14318 2.27092 2.70798 2.94141 3.07592 3.14833 3.27330 3.89965 4.09806 4.22713 4.71236 4.75846 5.28342 5.31661 5.44946 5.54432 5.68541 5.75965 5.77206 5.82056 5.97891 6.03893 6.06689 6.13424 6.14873 6.18124 6.23403 6.31747 6.42246 6.47626 6.52580 6.69032 6.80829 7.04054 7.21021 7.79591 7.91449 8.49082 8.65439 9.06406 9.44535 10.31997 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.007325 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.822932 B = 3821.389528 C = 4859.009357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.127 4.127 4 C 0.109 3.891 5 N -0.465 5.465 6 C -0.347 4.347 7 H 0.114 0.886 8 C 0.081 3.919 9 N -0.843 5.843 10 Si 0.885 3.115 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.257 1.257 14 C 0.561 3.439 15 O -0.580 6.580 16 C -0.276 4.276 17 S 0.295 5.705 18 C -0.056 4.056 19 C -0.069 4.069 20 N -0.495 5.495 21 C 0.106 3.894 22 C -0.073 4.073 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.282 0.718 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 0.602 2.315 3.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.013 4.013 5 N -0.186 5.186 6 C -0.480 4.480 7 H 0.131 0.869 8 C -0.131 4.131 9 N -0.476 5.476 10 Si 0.712 3.288 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.181 1.181 14 C 0.351 3.649 15 O -0.465 6.465 16 C -0.401 4.401 17 S 0.559 5.441 18 C -0.327 4.327 19 C -0.129 4.129 20 N -0.211 5.211 21 C -0.035 4.035 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.864 0.710 1.873 2.736 hybrid contribution 0.318 -1.030 0.638 1.253 sum -1.545 -0.321 2.512 2.966 Atomic orbital electron populations 1.21740 0.96101 1.00944 1.01779 1.21480 0.95651 0.97309 1.01684 1.21877 0.95819 0.96165 1.02685 1.21597 0.93977 0.84697 1.01068 1.43494 1.57790 1.12056 1.05237 1.18989 1.34577 1.02730 0.91750 0.86939 1.25513 0.94018 0.98577 0.95006 1.69609 1.38729 1.37861 1.01360 0.86712 0.79313 0.82593 0.80175 1.19473 1.21050 1.18060 1.17089 0.79204 0.84512 0.84095 1.90639 1.57443 1.67121 1.31328 1.25706 1.16993 1.00563 0.96826 1.85616 1.55873 0.96843 1.05756 1.28324 1.03687 1.05004 0.95711 1.20257 1.01409 0.90418 1.00806 1.65986 1.16567 1.18703 1.19873 1.20650 0.98598 0.87637 0.96574 1.20378 1.02846 1.00777 0.89170 0.92772 0.93228 0.92887 0.92233 0.92181 0.91926 0.91161 0.92044 0.90921 0.90741 0.90664 0.90699 0.90705 0.91414 0.92158 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.98 16 3 C -0.13 -2.31 5.54 -26.73 -0.15 -2.45 16 4 C 0.11 2.29 3.96 -4.04 -0.02 2.28 16 5 N -0.47 -10.90 2.05 -116.33 -0.24 -11.14 16 6 C -0.35 -8.41 7.46 -15.01 -0.11 -8.52 16 7 H 0.11 2.83 5.52 -32.13 -0.18 2.65 16 8 C 0.08 1.97 5.46 -17.45 -0.10 1.87 16 9 N -0.84 -21.02 13.95 55.50 0.77 -20.25 16 10 Si 0.89 19.46 24.75 -169.99 -4.21 15.25 16 11 H -0.27 -5.60 6.93 56.52 0.39 -5.21 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.26 -5.86 6.86 56.52 0.39 -5.47 16 14 C 0.56 13.44 7.58 -12.91 -0.10 13.34 16 15 O -0.58 -14.31 13.99 5.16 0.07 -14.24 16 16 C -0.28 -6.24 6.34 -36.76 -0.23 -6.47 16 17 S 0.29 6.04 18.54 -107.50 -1.99 4.04 16 18 C -0.06 -1.04 7.37 -13.31 -0.10 -1.14 16 19 C -0.07 -0.96 10.46 36.00 0.38 -0.58 16 20 N -0.49 -10.15 10.49 -7.47 -0.08 -10.22 16 21 C 0.11 2.25 6.83 -83.50 -0.57 1.68 16 22 C -0.07 -1.35 9.64 36.01 0.35 -1.01 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.29 3.69 -51.93 -0.19 1.10 16 31 H 0.07 1.53 7.37 -51.93 -0.38 1.15 16 32 H 0.28 6.57 8.32 -40.82 -0.34 6.23 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.78 6.23 -51.93 -0.32 1.46 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -27.52 319.97 -6.59 -34.11 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.31 Total: 2.12 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.44 Total: -4.50 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.46 Total: -41.62 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.07 Total: -14.24 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.21 Total: 15.25 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.99 Total: 4.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.52 -6.59 -34.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147241402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.056 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds