Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 S 1.70624 * 124.52474 * 270.02453 * 3 2 1 5 5 C 1.75828 * 91.56226 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45530 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.36936 * 119.99757 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00476 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12 18 18 H 1.48504 * 109.47032 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12 20 20 C 1.36643 * 109.08762 * 0.24358 * 5 4 3 21 21 C 1.33815 * 124.52172 * 90.00297 * 3 2 1 22 22 C 1.50696 * 122.44892 * 0.04309 * 21 3 2 23 23 H 1.09003 * 109.46885 * 299.99864 * 1 2 3 24 24 H 1.08998 * 109.46911 * 59.99917 * 1 2 3 25 25 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46885 * 240.00135 * 2 1 3 27 27 H 1.08998 * 109.46911 * 120.00083 * 2 1 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 29 29 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 30 30 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 32 32 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 33 33 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 34 34 H 0.96996 * 120.00458 * 179.97438 * 15 14 12 35 35 H 1.07995 * 123.35716 * 179.75353 * 20 5 4 36 36 H 1.08998 * 109.47556 * 90.00272 * 22 21 3 37 37 H 1.09000 * 109.47167 * 209.99944 * 22 21 3 38 38 H 1.08994 * 109.47391 * 329.99726 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7237 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3653 5.1949 -2.3215 9 6 3.8136 6.4813 -2.8604 10 6 3.7891 6.4302 -4.3894 11 7 4.2368 7.7169 -4.9282 12 6 4.2983 7.9077 -6.2828 13 1 4.0164 7.1100 -6.9539 14 6 4.7220 9.1270 -6.7934 15 7 5.0642 10.0998 -5.9756 16 14 4.8053 9.3876 -8.6413 17 1 3.4540 9.2028 -9.2286 18 1 5.2853 10.7638 -8.9260 19 1 5.7433 8.4032 -9.2382 20 6 2.7418 3.4128 0.8775 21 6 2.2852 2.1357 1.1025 22 6 2.0897 1.5796 2.4894 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1115 4.4786 -2.9243 29 1 3.1491 7.2724 -2.5127 30 1 4.8290 6.6840 -2.5199 31 1 4.4536 5.6393 -4.7370 32 1 2.7737 6.2277 -4.7300 33 1 4.4897 8.4336 -4.3255 34 1 5.3606 10.9517 -6.3323 35 1 2.9909 4.1026 1.6702 36 1 3.0116 1.1036 2.8233 37 1 1.8307 2.3888 3.1722 38 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150316829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = -11.183297 kcal Electronic energy + Delta-G solvation = -18748.563042 eV Core-core repulsion = 15717.330665 eV Total energy + Delta-G solvation = -3031.232377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75757 -38.61854 -35.70157 -34.09559 -33.85337 -31.36505 -30.57094 -28.23360 -27.42610 -24.93047 -23.38247 -22.59103 -21.49257 -20.64264 -18.89889 -18.02733 -17.29379 -16.39058 -15.73960 -15.44354 -14.82853 -14.61445 -14.54488 -14.38228 -13.87383 -13.65720 -13.38389 -13.18617 -12.95132 -12.89400 -12.50001 -12.41815 -11.98114 -11.67481 -11.48828 -11.42965 -11.12581 -11.01093 -10.82493 -10.79647 -10.17374 -10.03175 -9.74448 -9.06876 -8.91349 -8.79014 -8.58402 -6.99833 -5.79290 -3.10243 0.32854 1.25013 1.67296 2.15256 3.18486 3.21743 3.43128 3.47357 3.48810 4.31223 4.57154 4.60218 4.70497 4.85355 4.93135 5.02245 5.11467 5.32368 5.38056 5.43199 5.47406 5.49956 5.54335 5.60888 5.73468 5.76508 5.80137 5.94407 6.07166 6.13485 6.22299 6.43650 6.69084 6.71004 7.52168 7.65589 8.21052 8.38198 9.49410 10.03805 10.38820 11.43248 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036019 B = 0.002774 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.188731 B =10089.580100 C =10755.571092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.198 4.198 4 S 0.199 5.801 5 C -0.259 4.259 6 C 0.587 3.413 7 O -0.530 6.530 8 N -0.718 5.718 9 C 0.111 3.889 10 C 0.144 3.856 11 N -0.729 5.729 12 C -0.245 4.245 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.911 3.089 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C -0.052 4.052 21 C -0.121 4.121 22 C -0.093 4.093 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.396 0.604 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -23.002 14.960 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.318 4.318 4 S 0.468 5.532 5 C -0.379 4.379 6 C 0.372 3.628 7 O -0.408 6.408 8 N -0.369 5.369 9 C -0.012 4.012 10 C 0.016 3.984 11 N -0.374 5.374 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.085 4.085 21 C -0.134 4.134 22 C -0.152 4.152 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.230 0.770 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.392 -22.619 13.700 27.744 hybrid contribution 0.156 0.409 0.387 0.584 sum -8.236 -22.210 14.087 27.560 Atomic orbital electron populations 1.21800 0.94084 1.02107 1.02689 1.20130 0.96348 0.89425 1.03449 1.24041 1.08327 1.02070 0.97348 1.82993 1.60245 1.02421 1.07509 1.24577 1.15928 0.99366 0.98066 1.16928 0.77920 0.85574 0.82385 1.90840 1.49247 1.42727 1.58018 1.45812 1.67872 1.17208 1.06024 1.21639 1.00574 0.83706 0.95261 1.20761 0.97599 0.90978 0.89067 1.42172 1.80048 1.10394 1.04798 1.19148 1.38004 0.97679 0.82779 0.91058 1.24783 1.01849 0.96218 0.97947 1.69653 1.50627 1.04239 1.33372 0.86217 0.77751 0.76938 0.84946 1.21173 1.21599 1.21176 1.20615 0.96840 0.95744 0.95286 1.18652 1.04247 0.93968 0.96504 1.20510 1.02047 1.01033 0.91609 0.92179 0.92279 0.91898 0.90629 0.89806 0.76970 0.90936 0.90925 0.95712 0.95730 0.77959 0.93283 0.83008 0.91234 0.91309 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.05 -0.34 5.72 -27.88 -0.16 -0.50 16 3 C -0.20 -1.74 5.53 -35.86 -0.20 -1.93 16 4 S 0.20 1.92 22.10 -107.50 -2.38 -0.45 16 5 C -0.26 -3.32 6.45 -36.79 -0.24 -3.56 16 6 C 0.59 9.36 7.78 -12.89 -0.10 9.26 16 7 O -0.53 -10.34 16.84 5.19 0.09 -10.25 16 8 N -0.72 -10.80 5.55 -61.64 -0.34 -11.14 16 9 C 0.11 1.99 5.79 -4.04 -0.02 1.97 16 10 C 0.14 2.88 6.37 -4.04 -0.03 2.86 16 11 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 12 C -0.25 -6.90 9.99 -15.06 -0.15 -7.05 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.05 -0.60 9.80 -40.43 -0.40 -1.00 16 21 C -0.12 -1.14 5.78 -106.45 -0.62 -1.75 16 22 C -0.09 -0.62 9.55 36.00 0.34 -0.28 16 23 H 0.06 0.35 7.81 -51.93 -0.41 -0.06 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.43 7.25 -51.93 -0.38 0.05 16 28 H 0.40 4.96 7.59 -40.82 -0.31 4.65 16 29 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 38 H 0.07 0.37 6.86 -51.93 -0.36 0.01 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -33.07 336.83 -9.01 -42.09 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.53 Total: 6.97 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.29 Total: -2.86 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.05 Total: -57.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.07 -9.01 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150316829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.904 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds