Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46933 * 2 1 4 4 C 1.37473 * 122.44627 * 264.97064 * 3 2 1 5 5 C 1.36647 * 113.29745 * 180.02562 * 4 3 2 6 6 C 1.46586 * 125.45923 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.36936 * 119.99757 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00476 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12 18 18 H 1.48504 * 109.47032 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12 20 20 S 1.75834 * 109.08343 * 0.26552 * 5 4 3 21 21 C 1.33816 * 122.45248 * 84.99138 * 3 2 1 22 22 C 1.50696 * 124.52152 * 359.94881 * 21 3 2 23 23 H 1.09000 * 109.47716 * 300.00402 * 1 2 3 24 24 H 1.09003 * 109.47005 * 60.00793 * 1 2 3 25 25 H 1.09008 * 109.47212 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47264 * 239.99781 * 2 1 3 27 27 H 1.09003 * 109.47005 * 119.99207 * 2 1 3 28 28 H 1.08000 * 123.35530 * 0.04547 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 35 35 H 0.96996 * 120.00458 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47347 * 90.00100 * 22 21 3 37 37 H 1.09002 * 109.46929 * 209.99615 * 22 21 3 38 38 H 1.09000 * 109.47505 * 329.99371 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0823 -1.1557 5 6 2.8062 3.3604 -0.9392 6 6 3.2352 4.3006 -1.9788 7 8 3.2232 3.9622 -3.1478 8 7 3.6419 5.5401 -1.6401 9 6 4.0763 6.4777 -2.6786 10 6 4.4898 7.8006 -2.0307 11 7 4.9249 8.7380 -3.0691 12 6 5.3431 9.9956 -2.7245 13 1 5.3526 10.2963 -1.6873 14 6 5.7558 10.8836 -3.7084 15 7 5.7456 10.5167 -4.9724 16 14 6.3270 12.5989 -3.2384 17 1 7.4981 12.4993 -2.3308 18 1 6.7113 13.3456 -4.4632 19 1 5.2250 13.3156 -2.5476 20 16 2.7719 3.6943 0.7868 21 6 2.1786 2.1307 1.1249 22 6 1.8670 1.6156 2.5064 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.3072 1.6364 -2.1370 29 1 3.6511 5.8100 -0.7085 30 1 4.9252 6.0559 -3.2169 31 1 3.2563 6.6546 -3.3745 32 1 3.6411 8.2224 -1.4924 33 1 5.3100 7.6237 -1.3347 34 1 4.9167 8.4679 -4.0007 35 1 6.0337 11.1373 -5.6599 36 1 2.7568 1.1495 2.9297 37 1 1.5542 2.4447 3.1412 38 1 1.0645 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150386976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = -10.925394 kcal Electronic energy + Delta-G solvation = -18755.097115 eV Core-core repulsion = 15723.875921 eV Total energy + Delta-G solvation = -3031.221194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78547 -38.69197 -35.69727 -33.86283 -33.17905 -31.86352 -31.21684 -28.43531 -26.80777 -24.24463 -24.04520 -22.78149 -21.47535 -20.47786 -18.86558 -18.02702 -17.29363 -16.41449 -15.63800 -15.45331 -14.91838 -14.57545 -14.46513 -14.42489 -13.76982 -13.65040 -13.47517 -13.19147 -13.02084 -12.89894 -12.67365 -12.35072 -11.94988 -11.71266 -11.43132 -11.31245 -11.11932 -10.94140 -10.82064 -10.79628 -10.17325 -10.02981 -9.74402 -9.06453 -8.90799 -8.78147 -8.60630 -6.99808 -5.79259 -3.10213 0.32750 1.24583 1.66086 2.15096 3.18609 3.21890 3.43145 3.47367 3.48826 4.43950 4.55159 4.60610 4.72047 4.87603 4.92477 5.02953 5.13460 5.27893 5.32693 5.46570 5.48433 5.49974 5.57214 5.60171 5.76559 5.76924 5.89586 5.94468 6.08613 6.13461 6.21900 6.43750 6.69129 6.71083 7.52354 7.65593 8.21267 8.38218 9.49422 10.03829 10.38839 11.43263 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041621 B = 0.002714 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.576240 B =10315.464510 C =10866.851915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.120 4.120 4 C -0.049 4.049 5 C -0.260 4.260 6 C 0.587 3.413 7 O -0.530 6.530 8 N -0.718 5.718 9 C 0.111 3.889 10 C 0.144 3.856 11 N -0.729 5.729 12 C -0.245 4.245 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.911 3.089 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 S 0.198 5.802 21 C -0.199 4.199 22 C -0.086 4.086 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.396 0.604 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 -21.827 15.915 28.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.132 4.132 4 C -0.082 4.082 5 C -0.380 4.380 6 C 0.372 3.628 7 O -0.408 6.408 8 N -0.369 5.369 9 C -0.012 4.012 10 C 0.016 3.984 11 N -0.374 5.374 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.742 3.258 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 S 0.467 5.533 21 C -0.318 4.318 22 C -0.144 4.144 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.291 -20.585 16.041 27.702 hybrid contribution -0.006 -0.181 -0.531 0.561 sum -9.297 -20.766 15.510 27.536 Atomic orbital electron populations 1.21760 0.94774 1.01666 1.02347 1.20238 0.95988 0.91128 1.02900 1.18641 1.04800 0.98471 0.91332 1.20606 0.95986 0.91827 0.99816 1.24566 1.16077 1.00352 0.97023 1.16926 0.77454 0.81120 0.87293 1.90840 1.54537 1.77067 1.18401 1.45811 1.66757 1.13194 1.11159 1.21638 1.00320 0.89150 0.90068 1.20761 0.96954 0.87924 0.92765 1.42173 1.78822 1.11643 1.04777 1.19146 1.36337 0.89188 0.92928 0.91061 1.24785 1.02047 0.98713 0.95268 1.69653 1.53417 1.35811 0.99003 0.86216 0.78545 0.84096 0.76986 1.21174 1.21603 1.21178 1.83013 1.60249 1.11125 0.98915 1.24003 1.07950 0.99541 1.00344 1.20404 1.02530 1.01500 0.89956 0.92621 0.92356 0.92343 0.90793 0.90991 0.83045 0.76971 0.90940 0.90930 0.95714 0.95730 0.77959 0.93285 0.90477 0.91098 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.83 37.16 0.37 -0.56 16 2 C -0.06 -0.44 5.54 -27.89 -0.15 -0.59 16 3 C -0.12 -1.12 5.04 -106.45 -0.54 -1.66 16 4 C -0.05 -0.57 9.78 -40.44 -0.40 -0.97 16 5 C -0.26 -3.32 6.45 -36.79 -0.24 -3.56 16 6 C 0.59 9.35 7.78 -12.89 -0.10 9.25 16 7 O -0.53 -10.34 16.84 5.19 0.09 -10.25 16 8 N -0.72 -10.78 5.55 -61.64 -0.34 -11.13 16 9 C 0.11 1.99 5.79 -4.04 -0.02 1.97 16 10 C 0.14 2.88 6.37 -4.04 -0.03 2.86 16 11 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 12 C -0.25 -6.89 9.99 -15.06 -0.15 -7.04 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 S 0.20 1.90 22.10 -107.50 -2.38 -0.48 16 21 C -0.20 -1.73 6.28 -35.86 -0.23 -1.95 16 22 C -0.09 -0.49 9.71 36.00 0.35 -0.14 16 23 H 0.05 0.34 7.24 -51.93 -0.38 -0.04 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.07 0.41 7.46 -51.93 -0.39 0.03 16 28 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.40 4.95 7.59 -40.82 -0.31 4.64 16 30 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.38 6.39 -51.93 -0.33 0.05 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -33.07 335.86 -8.92 -42.00 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.49 Total: 7.05 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.23 Total: -2.84 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.05 Total: -57.91 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.38 Total: -0.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.07 -8.92 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150386976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.070 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds