Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46933 * 2 1 4 4 C 1.37473 * 122.44627 * 264.97064 * 3 2 1 5 5 C 1.36647 * 113.29745 * 180.02562 * 4 3 2 6 6 C 1.46586 * 125.45923 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.36936 * 119.99757 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00476 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00323 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12 18 18 H 1.48504 * 109.47032 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12 20 20 S 1.75834 * 109.08343 * 0.26552 * 5 4 3 21 21 C 1.33816 * 122.45248 * 84.99138 * 3 2 1 22 22 C 1.50696 * 124.52152 * 359.94881 * 21 3 2 23 23 H 1.09000 * 109.47716 * 300.00402 * 1 2 3 24 24 H 1.09003 * 109.47005 * 60.00793 * 1 2 3 25 25 H 1.09008 * 109.47212 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47264 * 239.99781 * 2 1 3 27 27 H 1.09003 * 109.47005 * 119.99207 * 2 1 3 28 28 H 1.08000 * 123.35530 * 0.04547 * 4 3 2 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 35 35 H 0.96996 * 120.00458 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47347 * 90.00100 * 22 21 3 37 37 H 1.09002 * 109.46929 * 209.99615 * 22 21 3 38 38 H 1.09000 * 109.47505 * 329.99371 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0823 -1.1557 5 6 2.8062 3.3604 -0.9392 6 6 3.2352 4.3006 -1.9788 7 8 3.2232 3.9622 -3.1478 8 7 3.6419 5.5401 -1.6401 9 6 4.0763 6.4777 -2.6786 10 6 4.4898 7.8006 -2.0307 11 7 4.9249 8.7380 -3.0691 12 6 5.3431 9.9956 -2.7245 13 1 5.3526 10.2963 -1.6873 14 6 5.7558 10.8836 -3.7084 15 7 5.7456 10.5167 -4.9724 16 14 6.3270 12.5989 -3.2384 17 1 7.4981 12.4993 -2.3308 18 1 6.7113 13.3456 -4.4632 19 1 5.2250 13.3156 -2.5476 20 16 2.7719 3.6943 0.7868 21 6 2.1786 2.1307 1.1249 22 6 1.8670 1.6156 2.5064 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.3072 1.6364 -2.1370 29 1 3.6511 5.8100 -0.7085 30 1 4.9252 6.0559 -3.2169 31 1 3.2563 6.6546 -3.3745 32 1 3.6411 8.2224 -1.4924 33 1 5.3100 7.6237 -1.3347 34 1 4.9167 8.4679 -4.0007 35 1 6.0337 11.1373 -5.6599 36 1 2.7568 1.1495 2.9297 37 1 1.5542 2.4447 3.1412 38 1 1.0645 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150386976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = -33.048521 kcal Electronic energy + Delta-G solvation = -18756.056445 eV Core-core repulsion = 15723.875921 eV Total energy + Delta-G solvation = -3032.180525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95863 -39.56580 -37.36262 -35.58218 -33.95377 -33.16219 -32.39141 -29.93985 -27.87453 -25.71237 -24.84646 -24.03850 -23.04394 -21.57989 -19.75704 -19.25455 -19.00208 -17.39547 -16.98861 -16.80985 -16.46862 -15.81922 -15.51971 -15.24625 -15.11645 -14.97891 -14.83254 -14.46945 -14.06327 -13.59661 -13.30421 -13.15611 -13.05945 -12.90143 -12.67965 -12.60906 -12.55953 -12.39585 -12.13775 -11.88528 -11.84512 -11.58528 -11.31211 -10.99695 -10.35865 -9.63383 -9.37072 -9.08918 -7.97579 -5.29645 -0.55148 0.43331 0.86939 1.29167 1.48034 1.52130 1.58196 1.92545 2.07391 2.57001 3.36316 3.64759 3.82571 3.94169 4.07250 4.12793 4.15730 4.15964 4.39395 4.51842 4.53745 4.62911 4.71872 4.74797 4.90580 4.96729 4.98858 5.07349 5.11084 5.16393 5.22484 5.31585 5.45875 5.47169 5.54207 6.22554 6.31664 6.98602 7.28985 7.99584 8.23478 9.25915 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041621 B = 0.002714 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.576240 B =10315.464510 C =10866.851915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.047 4.047 5 C -0.302 4.302 6 C 0.586 3.414 7 O -0.577 6.577 8 N -0.709 5.709 9 C 0.128 3.872 10 C 0.149 3.851 11 N -0.746 5.746 12 C -0.251 4.251 13 H 0.084 0.916 14 C -0.077 4.077 15 N -0.971 5.971 16 Si 0.981 3.019 17 H -0.275 1.275 18 H -0.296 1.296 19 H -0.275 1.275 20 S 0.231 5.769 21 C -0.184 4.184 22 C -0.089 4.089 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.142 0.858 29 H 0.411 0.589 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.374 0.626 35 H 0.253 0.747 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -22.568 19.193 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.081 4.081 5 C -0.422 4.422 6 C 0.374 3.626 7 O -0.459 6.459 8 N -0.360 5.360 9 C 0.003 3.997 10 C 0.022 3.978 11 N -0.390 5.390 12 C -0.382 4.382 13 H 0.101 0.899 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.809 3.191 17 H -0.200 1.200 18 H -0.223 1.223 19 H -0.201 1.201 20 S 0.501 5.499 21 C -0.304 4.304 22 C -0.147 4.147 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.247 0.753 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.206 0.794 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.819 -21.338 19.404 30.467 hybrid contribution 0.098 -0.077 -1.425 1.431 sum -9.720 -21.414 17.978 29.602 Atomic orbital electron populations 1.21752 0.94267 1.02505 1.01848 1.20301 0.96343 0.89625 1.03812 1.18809 1.05360 0.99764 0.90590 1.20776 0.95188 0.91664 1.00502 1.24290 1.19086 1.00374 0.98418 1.17362 0.76427 0.81319 0.87466 1.90803 1.56594 1.77931 1.20564 1.45598 1.66482 1.12672 1.11256 1.21238 0.99278 0.88802 0.90335 1.20839 0.97541 0.87698 0.91705 1.42400 1.79085 1.12119 1.05381 1.19618 1.35082 0.90037 0.93465 0.89852 1.25701 1.03021 1.02937 0.95256 1.69830 1.55138 1.37063 1.00078 0.85105 0.78413 0.79097 0.76468 1.20044 1.22269 1.20052 1.82820 1.59671 1.11636 0.95766 1.24512 1.05459 0.98718 1.01695 1.20596 1.03770 1.02373 0.87983 0.92110 0.93859 0.90864 0.90881 0.89130 0.84001 0.75296 0.92330 0.92324 0.94356 0.94370 0.79385 0.93842 0.88921 0.89921 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.83 71.98 0.71 -0.82 16 2 C -0.06 -0.72 5.54 29.85 0.17 -0.55 16 3 C -0.13 -2.28 5.04 -21.05 -0.11 -2.38 16 4 C -0.05 -1.09 9.78 21.72 0.21 -0.87 16 5 C -0.30 -7.68 6.45 24.08 0.16 -7.53 16 6 C 0.59 19.18 7.78 86.42 0.67 19.85 16 7 O -0.58 -23.65 16.84 -4.36 -0.07 -23.72 16 8 N -0.71 -21.31 5.55 -467.15 -2.59 -23.90 16 9 C 0.13 4.65 5.79 86.38 0.50 5.15 16 10 C 0.15 5.88 6.37 86.38 0.55 6.43 16 11 N -0.75 -38.66 5.60 -343.45 -1.92 -40.58 16 12 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 13 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 14 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 15 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 16 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 S 0.23 4.00 22.10 -56.49 -1.25 2.75 16 21 C -0.18 -2.70 6.28 24.68 0.15 -2.54 16 22 C -0.09 -0.67 9.71 71.23 0.69 0.02 16 23 H 0.06 0.57 7.24 -2.39 -0.02 0.55 16 24 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.55 8.14 -2.38 -0.02 0.54 16 26 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 27 H 0.09 0.74 7.46 -2.39 -0.02 0.72 16 28 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.41 9.85 7.59 -92.71 -0.70 9.15 16 30 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 35 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.50 6.39 -2.39 -0.02 0.49 16 Total: -1.00 -72.03 335.86 1.15 -70.89 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.34 Total: 27.12 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.01 Total: -0.40 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -4.23 Total: -124.63 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.07 Total: -23.72 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.25 Total: 2.75 kcal Total: -72.03 1.15 -70.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150386976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.837 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds