Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47054 * 2 1 4 4 C 1.50698 * 109.47022 * 120.00328 * 2 1 3 5 5 C 1.33812 * 124.52670 * 120.00143 * 4 2 1 6 6 C 1.37474 * 115.10153 * 179.74710 * 5 4 2 7 7 C 1.36647 * 113.29620 * 0.49423 * 6 5 4 8 8 C 1.46586 * 125.45577 * 179.80409 * 7 6 5 9 9 O 1.21695 * 120.00258 * 359.71503 * 8 7 6 10 10 N 1.34774 * 119.99696 * 179.71688 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.36942 * 120.00106 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99638 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00269 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47105 * 59.99458 * 18 16 14 20 20 H 1.48504 * 109.47464 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46941 * 299.99691 * 18 16 14 22 22 S 1.70623 * 124.51918 * 300.02308 * 4 2 1 23 23 H 1.09001 * 109.47315 * 299.99756 * 1 2 3 24 24 H 1.09002 * 109.47025 * 60.00260 * 1 2 3 25 25 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47001 * 239.99850 * 2 1 3 27 27 H 1.09005 * 109.47339 * 60.00057 * 3 2 1 28 28 H 1.08997 * 109.47004 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47082 * 299.99935 * 3 2 1 30 30 H 1.08004 * 122.44732 * 359.97438 * 5 4 2 31 31 H 1.08006 * 123.35364 * 180.29446 * 6 5 4 32 32 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 34 34 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 35 35 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 36 36 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 37 37 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 38 38 H 0.97000 * 120.00516 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8048 -1.8029 1.2131 6 6 3.1552 -2.2891 2.4504 7 6 2.6339 -1.5628 3.4838 8 6 2.8336 -1.8463 4.9081 9 8 3.5082 -2.7997 5.2500 10 7 2.2702 -1.0509 5.8389 11 6 2.4693 -1.3345 7.2624 12 6 1.7286 -0.2894 8.0991 13 7 1.9283 -0.5727 9.5225 14 6 1.3550 0.2349 10.4683 15 1 0.7560 1.0808 10.1648 16 6 1.5446 -0.0331 11.8170 17 7 2.2750 -1.0637 12.1868 18 14 0.7633 1.0688 13.1071 19 1 -0.7125 1.0543 12.9424 20 1 1.1147 0.5715 14.4616 21 1 1.2660 2.4565 12.9430 22 16 1.6914 -0.2295 2.8315 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 3.1323 -2.2666 0.2943 31 1 3.7778 -3.1603 2.5916 32 1 1.7328 -0.2908 5.5664 33 1 2.0806 -2.3263 7.4932 34 1 3.5338 -1.2984 7.4946 35 1 2.1171 0.7025 7.8684 36 1 0.6643 -0.3260 7.8668 37 1 2.4659 -1.3326 9.7951 38 1 2.4072 -1.2513 13.1293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152777697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -9.188597 kcal Electronic energy + Delta-G solvation = -18738.595875 eV Core-core repulsion = 15707.449994 eV Total energy + Delta-G solvation = -3031.145881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67816 -38.35005 -35.78652 -35.31312 -33.85986 -31.32282 -29.57369 -27.62827 -27.60888 -25.13892 -23.53383 -21.77060 -21.54967 -21.15207 -19.44381 -17.97876 -17.25172 -16.29554 -15.67626 -15.42027 -14.91738 -14.78891 -14.54127 -14.24747 -14.01109 -13.74030 -13.38806 -13.18640 -12.87511 -12.87285 -12.45608 -12.41531 -11.75387 -11.61672 -11.56157 -11.43613 -11.12089 -10.95595 -10.82149 -10.79697 -10.17392 -10.03220 -9.74513 -9.08958 -8.92368 -8.80192 -8.74715 -6.99845 -5.79327 -3.10332 0.32697 1.23335 1.67572 2.21744 3.19329 3.22807 3.43088 3.47344 3.48782 4.16212 4.45052 4.57791 4.66858 4.79757 4.94634 5.12972 5.17068 5.25688 5.37426 5.37867 5.48729 5.49946 5.55500 5.72048 5.76523 5.77739 5.83017 5.94344 5.96402 6.12736 6.15290 6.43692 6.69057 6.71022 7.52343 7.65467 8.21294 8.38199 9.49383 10.03780 10.38760 11.43208 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002849 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.428349 B = 9826.723861 C =10569.791739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.190 4.190 5 C -0.153 4.153 6 C -0.056 4.056 7 C -0.263 4.263 8 C 0.586 3.414 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.111 3.889 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 S 0.205 5.795 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.396 0.604 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.387 0.613 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 2.850 -28.184 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.310 4.310 5 C -0.184 4.184 6 C -0.089 4.089 7 C -0.384 4.384 8 C 0.372 3.628 9 O -0.409 6.409 10 N -0.369 5.369 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.374 5.374 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 S 0.473 5.527 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.230 0.770 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.432 3.479 -27.145 27.475 hybrid contribution 0.382 -0.541 0.013 0.662 sum -2.050 2.938 -27.133 27.368 Atomic orbital electron populations 1.21952 0.93725 1.02581 1.02477 1.19775 0.96058 0.95719 0.93239 1.21950 1.01720 0.94583 1.02479 1.24296 1.04874 1.01611 1.00172 1.19964 1.01930 0.97601 0.98881 1.20743 0.98194 0.99710 0.90209 1.24684 1.11450 1.04601 0.97631 1.16934 0.79744 0.82667 0.83474 1.90838 1.39604 1.29025 1.81384 1.45817 1.52961 1.30950 1.07208 1.21639 1.01626 1.00351 0.77575 1.20758 0.96690 0.94895 0.86060 1.42172 1.62103 1.34665 0.98475 1.19149 1.25121 1.06816 0.86529 0.91058 1.24779 1.00500 0.98412 0.97095 1.69655 1.43130 1.29301 1.15809 0.86218 0.78855 0.79833 0.80948 1.21176 1.21601 1.21171 1.82943 1.47396 1.26464 0.95897 0.92211 0.91711 0.92037 0.89308 0.92214 0.92038 0.91707 0.83978 0.82978 0.76983 0.90936 0.90927 0.95723 0.95721 0.77960 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.08 37.16 0.34 -0.52 16 2 C -0.03 -0.17 3.25 -91.77 -0.30 -0.47 16 3 C -0.15 -0.85 9.08 37.16 0.34 -0.52 16 4 C -0.19 -1.61 4.95 -35.86 -0.18 -1.79 16 5 C -0.15 -1.38 9.95 -41.41 -0.41 -1.79 16 6 C -0.06 -0.63 10.01 -40.43 -0.40 -1.03 16 7 C -0.26 -3.32 6.45 -36.79 -0.24 -3.56 16 8 C 0.59 9.30 7.78 -12.90 -0.10 9.20 16 9 O -0.53 -10.31 16.84 5.19 0.09 -10.22 16 10 N -0.72 -10.73 5.55 -61.64 -0.34 -11.07 16 11 C 0.11 1.98 5.79 -4.04 -0.02 1.96 16 12 C 0.14 2.87 6.37 -4.05 -0.03 2.85 16 13 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 14 C -0.25 -6.89 9.99 -15.06 -0.15 -7.04 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 18 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 S 0.20 1.94 21.37 -107.50 -2.30 -0.36 16 23 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 27 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.40 4.91 7.59 -40.82 -0.31 4.60 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -32.92 338.02 -8.98 -41.90 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.64 Total: 7.19 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.25 Total: -3.13 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.05 Total: -57.80 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.30 Total: -0.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.92 -8.98 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152777697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.707 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds