Wall clock time and date at job start Tue Mar 31 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75511 * 124.70839 * 2 1 4 4 C 1.70453 * 92.43987 * 179.80950 * 3 2 1 5 5 C 1.36009 * 110.81992 * 0.34758 * 4 3 2 6 6 C 1.47186 * 123.46295 * 179.86284 * 5 4 3 7 7 O 1.21634 * 120.00249 * 179.70136 * 6 5 4 8 8 N 1.34774 * 119.99768 * 359.70229 * 6 5 4 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.47369 * 179.97438 * 11 10 9 13 13 C 1.36937 * 120.00316 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99647 * 359.97438 * 13 12 11 15 15 C 1.38814 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99665 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46953 * 60.00166 * 17 15 13 19 19 H 1.48496 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47290 * 299.99991 * 17 15 13 21 21 C 1.32762 * 124.71228 * 180.02562 * 2 1 3 22 22 C 1.50699 * 123.45838 * 359.96538 * 21 2 1 23 23 H 1.09003 * 109.46835 * 269.99531 * 1 2 3 24 24 H 1.08997 * 109.47470 * 29.99383 * 1 2 3 25 25 H 1.08998 * 109.47478 * 149.99623 * 1 2 3 26 26 H 1.07999 * 124.59047 * 180.22812 * 4 3 2 27 27 H 0.97001 * 120.00676 * 359.97438 * 8 6 5 28 28 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 29 29 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 30 30 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 31 31 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 32 32 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 33 33 H 1.09004 * 109.47298 * 59.99717 * 11 10 9 34 34 H 0.96998 * 119.99822 * 0.02562 * 12 11 10 35 35 H 0.97001 * 119.99952 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47228 * 270.02784 * 22 21 2 37 37 H 1.09003 * 109.47052 * 30.03538 * 22 21 2 38 38 H 1.09000 * 109.47002 * 150.02962 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5064 1.4428 0.0000 4 6 3.9476 0.5328 0.0057 5 6 3.6777 -0.8002 -0.0003 6 6 4.7201 -1.8394 -0.0003 7 8 4.4072 -3.0148 -0.0003 8 7 6.0214 -1.4885 -0.0004 9 6 7.0590 -2.5228 -0.0010 10 6 8.4385 -1.8612 -0.0003 11 6 9.5221 -2.9413 -0.0016 12 7 10.8431 -2.3079 -0.0015 13 6 11.9732 -3.0812 -0.0021 14 1 11.8907 -4.1580 -0.0021 15 6 13.2249 -2.4810 -0.0015 16 7 13.3254 -1.1687 -0.0009 17 14 14.7665 -3.5358 -0.0015 18 1 14.7801 -4.3926 -1.2144 19 1 15.9656 -2.6599 -0.0014 20 1 14.7794 -4.3936 1.2106 21 6 2.2630 -1.0913 -0.0005 22 6 1.7027 -2.4903 -0.0004 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 4.9407 0.9572 0.0111 27 1 6.2710 -0.5511 -0.0007 28 1 6.9536 -3.1436 0.8887 29 1 6.9534 -3.1428 -0.8913 30 1 8.5441 -1.2401 -0.8898 31 1 8.5438 -1.2415 0.8902 32 1 9.4167 -3.5628 0.8877 33 1 9.4166 -3.5608 -0.8923 34 1 10.9172 -1.3408 -0.0003 35 1 14.2001 -0.7492 -0.0001 36 1 1.5676 -2.8275 1.0273 37 1 0.7414 -2.4967 -0.5143 38 1 2.3937 -3.1585 -0.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158783603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:14 Heat of formation + Delta-G solvation = -11.924643 kcal Electronic energy + Delta-G solvation = -18742.974212 eV Core-core repulsion = 15711.709687 eV Total energy + Delta-G solvation = -3031.264524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09598 -37.74833 -35.98143 -34.43287 -32.91269 -31.76308 -29.73237 -29.39553 -26.22662 -25.26570 -24.10723 -22.44701 -21.21652 -20.27457 -18.77198 -17.79796 -17.17495 -16.82305 -15.71371 -15.64286 -14.85256 -14.71780 -14.50939 -14.09596 -13.95350 -13.29279 -13.25308 -13.06737 -12.93124 -12.80829 -12.47648 -12.37061 -12.05550 -11.87701 -11.64064 -11.08876 -10.96084 -10.91585 -10.78963 -10.61967 -10.12353 -9.84093 -9.68869 -9.12265 -8.92169 -8.88002 -8.57599 -6.94295 -5.77668 -3.06663 0.49058 1.22751 1.62519 1.74893 3.13198 3.25578 3.44552 3.48494 3.49835 4.34149 4.58514 4.67064 4.81262 4.96603 4.99859 5.14000 5.16477 5.30151 5.32154 5.44354 5.54417 5.56965 5.61472 5.62932 5.81547 5.96761 6.02192 6.05450 6.17764 6.30740 6.35869 6.46938 6.77941 6.82320 7.45140 7.69270 8.16612 8.41362 9.52321 10.09334 10.44033 11.45325 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042636 B = 0.002462 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.563142 B =11371.541407 C =11991.750252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.214 4.214 3 S 0.180 5.820 4 C -0.213 4.213 5 C -0.146 4.146 6 C 0.574 3.426 7 O -0.534 6.534 8 N -0.722 5.722 9 C 0.123 3.877 10 C -0.138 4.138 11 C 0.157 3.843 12 N -0.734 5.734 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.056 4.056 22 C -0.099 4.099 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.171 0.829 27 H 0.398 0.602 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.447 6.217 -0.016 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.330 4.330 3 S 0.448 5.552 4 C -0.351 4.351 5 C -0.164 4.164 6 C 0.360 3.640 7 O -0.413 6.413 8 N -0.373 5.373 9 C 0.000 4.000 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.067 4.067 22 C -0.158 4.158 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.188 0.812 27 H 0.233 0.767 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.834 6.800 -0.021 28.652 hybrid contribution 1.687 -1.076 0.032 2.001 sum -26.146 5.724 0.011 26.766 Atomic orbital electron populations 1.20326 0.87509 1.03167 1.02782 1.24148 1.00389 0.95602 1.12876 1.82970 0.93677 1.08306 1.70246 1.25612 1.04804 0.97584 1.07102 1.20169 0.94012 0.92472 1.09767 1.17578 0.82028 0.87911 0.76528 1.90742 1.81880 1.18612 1.50024 1.45953 1.05564 1.10736 1.75044 1.21386 0.85839 0.90131 1.02640 1.21950 0.92998 0.99974 1.02706 1.20517 0.85035 0.93354 0.98250 1.42331 0.99653 1.06194 1.89639 1.19204 0.84727 0.90475 1.42757 0.91126 1.24760 0.97622 0.95732 1.02983 1.69650 1.23275 1.07679 1.57780 0.86229 0.82744 0.79095 0.77903 1.21215 1.21671 1.21213 1.19729 0.90252 0.96717 0.99967 1.20661 1.00736 0.91578 1.02832 0.90748 0.91378 0.90320 0.81183 0.76722 0.91155 0.91153 0.91300 0.91298 0.96011 0.96006 0.78315 0.93451 0.91069 0.91916 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.04 36.01 0.36 -0.11 16 2 C -0.21 -1.87 6.44 -36.18 -0.23 -2.11 16 3 S 0.18 1.39 23.00 -107.50 -2.47 -1.08 16 4 C -0.21 -1.94 10.38 29.93 0.31 -1.62 16 5 C -0.15 -1.69 5.98 -104.63 -0.63 -2.32 16 6 C 0.57 7.89 7.79 -12.63 -0.10 7.80 16 7 O -0.53 -8.88 14.21 5.25 0.07 -8.80 16 8 N -0.72 -8.87 5.52 -61.45 -0.34 -9.21 16 9 C 0.12 1.72 5.67 -4.04 -0.02 1.69 16 10 C -0.14 -2.13 5.44 -26.73 -0.15 -2.27 16 11 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 12 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 13 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 15 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 16 N -0.94 -28.44 13.06 55.49 0.72 -27.72 16 17 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.06 -0.61 6.01 -104.06 -0.63 -1.23 16 22 C -0.10 -1.01 9.27 36.01 0.33 -0.68 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.42 6.66 -51.93 -0.35 0.07 16 26 H 0.17 1.17 7.01 -52.49 -0.37 0.80 16 27 H 0.40 3.91 6.97 -40.82 -0.28 3.62 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.49 6.64 -51.93 -0.34 0.15 16 38 H 0.09 1.15 6.02 -51.93 -0.31 0.83 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -33.23 331.43 -8.71 -41.94 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.32 Total: 6.71 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.02 Total: -5.26 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.05 Total: -56.06 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.47 Total: -1.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.23 -8.71 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158783603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.018 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds