Wall clock time and date at job start Tue Mar 31 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47187 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47356 * 179.97438 * 12 11 10 14 14 C 1.36933 * 119.99764 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00305 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99452 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00422 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99859 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46978 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46927 * 120.00393 * 18 16 14 21 21 H 1.48496 * 109.47367 * 240.00724 * 18 16 14 22 22 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 24 24 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 25 25 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 26 26 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 27 27 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 29 29 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 30 30 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 32 32 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 33 33 H 1.09005 * 109.47128 * 299.99786 * 11 10 9 34 34 H 1.09003 * 109.47517 * 60.00176 * 11 10 9 35 35 H 1.08992 * 109.46978 * 300.00225 * 12 11 10 36 36 H 1.09003 * 109.46579 * 59.99809 * 12 11 10 37 37 H 0.97004 * 119.99784 * 0.02562 * 13 12 11 38 38 H 0.97004 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8155 -4.3893 -0.0290 12 6 8.2382 -4.9522 -0.0378 13 7 8.1842 -6.4162 -0.0403 14 6 9.3441 -7.1440 -0.0485 15 1 10.2986 -6.6388 -0.0527 16 6 9.2929 -8.5312 -0.0504 17 7 8.1296 -9.1469 -0.0447 18 14 10.8751 -9.5242 -0.0608 19 1 12.0387 -8.6014 -0.0654 20 1 10.9290 -10.3822 1.1500 21 1 10.9155 -10.3783 -1.2749 22 16 2.4740 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.8429 2.0965 0.0006 27 1 4.8925 2.2503 1.0263 28 1 4.2380 2.8549 -0.5146 29 1 5.5446 1.6461 -0.5158 30 1 4.7495 -2.9242 -0.0161 31 1 7.3945 -2.5138 -0.9172 32 1 7.4029 -2.5187 0.8627 33 1 6.2929 -4.7355 0.8628 34 1 6.2843 -4.7315 -0.9173 35 1 8.7604 -4.6059 -0.9296 36 1 8.7697 -4.6100 0.8503 37 1 7.3268 -6.8699 -0.0369 38 1 8.0939 -10.1162 -0.0464 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158945501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:57 Heat of formation + Delta-G solvation = -11.589448 kcal Electronic energy + Delta-G solvation = -18680.389164 eV Core-core repulsion = 15649.139175 eV Total energy + Delta-G solvation = -3031.249989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96337 -38.28785 -36.01395 -34.36884 -32.99949 -32.02457 -29.86947 -28.57621 -27.63791 -25.08630 -22.81711 -22.32306 -21.36656 -21.09136 -19.13745 -17.89593 -17.03301 -16.24592 -15.76375 -15.75114 -14.86172 -14.82575 -14.47147 -14.13225 -13.86091 -13.37326 -13.35224 -13.26307 -13.19669 -12.91792 -12.43815 -12.15426 -11.96586 -11.87610 -11.65839 -11.11052 -10.96195 -10.93353 -10.77163 -10.63207 -10.06983 -9.90889 -9.70586 -9.19253 -8.88647 -8.84370 -8.66786 -6.93528 -5.77338 -3.06245 0.25392 1.18771 1.59808 2.10504 3.08892 3.09486 3.43778 3.49520 3.51808 4.35004 4.58965 4.66593 4.79364 4.93839 5.06426 5.07446 5.14150 5.30306 5.33671 5.45563 5.55373 5.57541 5.61628 5.70758 5.79639 5.94465 6.05519 6.10396 6.18294 6.27792 6.31840 6.42983 6.78520 6.82848 7.39168 7.70745 8.09331 8.41602 9.52835 10.09854 10.44560 11.45766 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034164 B = 0.002624 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.375464 B =10669.616990 C =11452.631954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.193 4.193 3 C -0.156 4.156 4 C -0.017 4.017 5 C -0.106 4.106 6 C -0.276 4.276 7 C 0.590 3.410 8 O -0.529 6.529 9 N -0.724 5.724 10 C 0.124 3.876 11 C -0.139 4.139 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 S 0.196 5.804 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.397 0.603 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.384 0.616 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.234 21.409 0.079 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.312 4.312 3 C -0.187 4.187 4 C -0.032 4.032 5 C -0.164 4.164 6 C -0.396 4.396 7 C 0.376 3.624 8 O -0.408 6.408 9 N -0.375 5.375 10 C 0.001 3.999 11 C -0.177 4.177 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 S 0.465 5.535 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.161 0.839 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.231 0.769 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.666 20.303 0.080 26.267 hybrid contribution 0.302 0.420 0.011 0.518 sum -16.363 20.723 0.091 26.405 Atomic orbital electron populations 1.20408 0.87346 1.03545 1.03152 1.24186 1.01518 0.97876 1.07655 1.19844 0.92148 0.99603 1.07065 1.19484 0.94722 0.93446 0.95534 1.20748 0.98032 0.94581 1.03076 1.24387 0.96954 0.97509 1.20788 1.16899 0.86685 0.82297 0.76528 1.90774 1.41882 1.57687 1.50437 1.45970 1.10047 1.06147 1.75319 1.21402 0.81784 0.94014 1.02733 1.21965 1.00403 0.92538 1.02815 1.20515 0.92260 0.86088 0.98264 1.42349 1.06623 0.99265 1.89598 1.19293 0.86504 0.88732 1.42470 0.91019 1.24759 0.96838 0.96500 1.03034 1.69671 1.22678 1.08026 1.57948 0.86094 0.82630 0.80169 0.77184 1.20499 1.21843 1.21838 1.83045 0.94232 1.07412 1.68800 0.90314 0.90966 0.90287 0.83924 0.90674 0.91751 0.88745 0.76868 0.91042 0.91040 0.91224 0.91232 0.95985 0.95989 0.78292 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.31 36.01 0.37 -0.08 16 2 C -0.19 -1.58 6.28 -35.86 -0.23 -1.80 16 3 C -0.16 -1.37 9.82 -41.41 -0.41 -1.78 16 4 C -0.02 -0.18 5.90 -105.47 -0.62 -0.81 16 5 C -0.11 -1.07 9.56 36.01 0.34 -0.72 16 6 C -0.28 -3.27 6.45 -36.79 -0.24 -3.51 16 7 C 0.59 8.27 7.78 -12.90 -0.10 8.17 16 8 O -0.53 -8.81 14.24 5.19 0.07 -8.74 16 9 N -0.72 -9.28 5.55 -61.65 -0.34 -9.62 16 10 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 11 C -0.14 -2.17 5.44 -26.73 -0.15 -2.31 16 12 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 13 N -0.73 -18.81 5.60 -59.91 -0.34 -19.15 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 18 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 S 0.20 1.78 22.10 -107.50 -2.38 -0.60 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.16 6.00 -51.93 -0.31 0.85 16 30 H 0.40 4.32 7.59 -40.82 -0.31 4.01 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.38 10.21 7.67 -40.82 -0.31 9.89 16 38 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -32.98 335.40 -9.09 -42.07 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.55 Total: 6.60 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.32 Total: -5.48 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.05 Total: -56.47 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.98 -9.09 -42.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158945501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.484 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds