Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08994 * 109.47024 * 306.17854 * 3 2 1 5 5 C 1.50700 * 109.47022 * 186.17611 * 3 2 1 6 6 H 1.08003 * 119.99971 * 335.11772 * 5 3 2 7 7 C 1.37874 * 120.00167 * 155.11768 * 5 3 2 8 8 N 1.31521 * 119.99717 * 357.15596 * 7 5 3 9 9 Si 1.86798 * 119.99980 * 176.87865 * 7 5 3 10 10 H 1.48491 * 109.47259 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46896 * 120.00063 * 9 7 5 12 12 H 1.48499 * 109.47117 * 239.99485 * 9 7 5 13 13 N 1.46503 * 109.47201 * 66.17988 * 3 2 1 14 14 C 1.38345 * 119.99511 * 274.99801 * 13 3 2 15 15 N 1.32394 * 119.80563 * 354.47027 * 14 13 3 16 16 C 1.31860 * 121.80445 * 179.97438 * 15 14 13 17 17 C 1.38586 * 121.20663 * 0.02562 * 16 15 14 18 18 F 1.35091 * 120.27306 * 180.02562 * 17 16 15 19 19 C 1.38480 * 119.45628 * 359.97438 * 17 16 15 20 20 C 1.40063 * 118.34380 * 359.73381 * 19 17 16 21 21 C 1.47288 * 120.60085 * 180.28558 * 20 19 17 22 22 O 1.21526 * 120.00041 * 185.06135 * 21 20 19 23 23 O 1.34770 * 120.00064 * 5.06701 * 21 20 19 24 24 C 1.45205 * 116.99753 * 180.02562 * 23 21 20 25 25 H 1.09000 * 109.47237 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47032 * 60.00460 * 1 2 3 27 27 H 1.09007 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47208 * 239.99609 * 2 1 3 29 29 H 1.09006 * 109.46767 * 119.99897 * 2 1 3 30 30 H 0.96993 * 120.00076 * 5.14694 * 8 7 5 31 31 H 0.96998 * 120.00074 * 94.99530 * 13 3 2 32 32 H 1.08004 * 119.39871 * 179.97438 * 16 15 14 33 33 H 1.08006 * 120.82378 * 179.97438 * 19 17 16 34 34 H 1.08999 * 109.46566 * 179.97438 * 24 23 21 35 35 H 1.08996 * 109.46504 * 299.99349 * 24 23 21 36 36 H 1.08998 * 109.47347 * 59.99785 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9872 -0.8295 5 6 3.5392 1.4453 -0.1529 6 1 4.1148 0.5842 0.1532 7 6 4.1761 2.5470 -0.6834 8 7 3.4711 3.5730 -1.1078 9 14 6.0405 2.5857 -0.7923 10 1 6.5945 1.3206 -0.2468 11 1 6.4504 2.7335 -2.2120 12 1 6.5586 3.7336 -0.0055 13 7 1.6768 2.0889 1.2636 14 6 0.4298 2.6699 1.4099 15 7 -0.3907 2.7369 0.3730 16 6 -1.5878 3.2815 0.4682 17 6 -2.0424 3.8115 1.6653 18 9 -3.2726 4.3645 1.7416 19 6 -1.2258 3.7685 2.7828 20 6 0.0391 3.1798 2.6598 21 6 0.9457 3.1018 3.8181 22 8 2.0742 2.6729 3.6786 23 8 0.5236 3.5058 5.0325 24 6 1.4708 3.4009 6.1281 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.5097 3.5871 -0.9798 31 1 2.3106 2.1094 1.9976 32 1 -2.2254 3.3159 -0.4029 33 1 -1.5576 4.1753 3.7267 34 1 1.0052 3.7587 7.0464 35 1 1.7680 2.3597 6.2528 36 1 2.3502 4.0059 5.9073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161048745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -92.951843 kcal Electronic energy + Delta-G solvation = -22730.720852 eV Core-core repulsion = 19129.729549 eV Total energy + Delta-G solvation = -3600.991304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.46462 -40.64004 -39.26594 -36.58869 -36.00208 -32.66703 -32.51776 -31.72757 -29.06814 -27.69890 -26.24803 -24.62892 -23.24345 -22.32076 -21.25419 -20.06095 -18.12884 -17.60823 -17.17146 -16.94144 -16.27772 -16.10335 -15.66294 -15.37807 -14.54604 -14.11904 -13.98006 -13.82792 -13.60497 -13.30352 -13.14170 -12.91837 -12.54702 -12.44718 -12.21389 -11.95811 -11.13514 -10.86699 -10.84043 -10.74403 -10.53447 -10.40627 -10.21846 -10.15960 -9.67315 -9.37703 -9.11447 -8.83031 -8.50429 -6.97278 -6.57603 -4.39169 0.85194 1.64998 2.75629 2.80670 3.35198 3.37721 3.52648 3.99702 4.10622 4.37874 4.42420 4.78711 4.93762 5.01228 5.12112 5.20470 5.26414 5.43648 5.61362 5.68859 5.88656 5.91952 5.96561 6.03321 6.14459 6.42443 6.59998 6.74795 6.76779 6.84259 7.00228 7.23375 7.69405 7.89220 7.96938 8.23321 8.26641 8.64211 8.92876 9.40942 10.79711 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.006674 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.893243 B = 4194.242928 C = 5158.452800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.231 3.769 4 H 0.065 0.935 5 C -0.606 4.606 6 H 0.058 0.942 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 1.074 2.926 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.648 5.648 14 C 0.452 3.548 15 N -0.511 5.511 16 C 0.179 3.821 17 C -0.072 4.072 18 F -0.144 7.144 19 C 0.001 3.999 20 C -0.270 4.270 21 C 0.523 3.477 22 O -0.509 6.509 23 O -0.359 6.359 24 C 0.037 3.963 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.278 0.722 31 H 0.416 0.584 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 -0.363 9.127 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.132 3.868 4 H 0.083 0.917 5 C -0.645 4.645 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.902 3.098 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.279 5.279 14 C 0.207 3.793 15 N -0.228 5.228 16 C 0.010 3.990 17 C -0.098 4.098 18 F -0.124 7.124 19 C -0.025 4.025 20 C -0.281 4.281 21 C 0.371 3.629 22 O -0.399 6.399 23 O -0.275 6.275 24 C -0.057 4.057 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.265 0.735 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.345 -0.096 7.659 9.946 hybrid contribution -1.475 -0.371 1.873 2.413 sum -7.821 -0.467 9.532 12.339 Atomic orbital electron populations 1.21846 0.97276 0.98971 1.01722 1.21810 0.94091 0.98951 1.00763 1.19218 0.95593 0.88940 0.83084 0.91677 1.22172 0.91080 1.04330 1.46886 0.92402 1.26030 1.07273 0.92339 0.92061 1.70699 1.09838 1.31416 1.40144 0.83472 0.73694 0.75726 0.76903 1.21218 1.20992 1.21203 1.48137 1.09441 1.50265 1.20008 1.18826 0.88039 0.86122 0.86299 1.67747 1.04032 1.21757 1.29221 1.22876 0.91739 0.88714 0.95668 1.18072 0.84147 1.10949 0.96612 1.91435 1.39644 1.84299 1.96978 1.21459 0.90988 0.91961 0.98116 1.19017 0.97214 1.19471 0.92372 1.20759 0.85690 0.74001 0.82492 1.90594 1.20661 1.44493 1.84120 1.86528 1.45120 1.78079 1.17774 1.23234 0.92844 1.02706 0.86867 0.93950 0.92315 0.94903 0.91862 0.93700 0.91043 0.73541 0.81783 0.83516 0.88284 0.91891 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.54 37.16 0.32 -2.30 16 2 C -0.12 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.23 5.62 1.92 -69.08 -0.13 5.48 16 4 H 0.07 1.72 6.05 -51.93 -0.31 1.41 16 5 C -0.61 -16.24 8.50 -34.44 -0.29 -16.53 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.03 0.88 5.46 -17.82 -0.10 0.79 16 8 N -0.89 -25.90 13.62 55.43 0.75 -25.15 16 9 Si 1.07 24.49 29.90 -169.99 -5.08 19.41 16 10 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 13 N -0.65 -14.92 5.03 -54.85 -0.28 -15.19 16 14 C 0.45 9.30 5.89 -155.13 -0.91 8.38 16 15 N -0.51 -9.83 6.87 -12.13 -0.08 -9.92 16 16 C 0.18 2.81 11.15 -17.41 -0.19 2.62 16 17 C -0.07 -1.10 7.32 -39.36 -0.29 -1.39 16 18 F -0.14 -2.08 17.28 2.25 0.04 -2.04 16 19 C 0.00 0.02 9.71 -38.81 -0.38 -0.36 16 20 C -0.27 -4.92 5.91 -104.67 -0.62 -5.53 16 21 C 0.52 9.43 7.88 34.41 0.27 9.71 16 22 O -0.51 -10.48 13.46 -19.29 -0.26 -10.74 16 23 O -0.36 -5.27 9.90 -40.68 -0.40 -5.67 16 24 C 0.04 0.42 10.57 101.05 1.07 1.48 16 25 H 0.04 0.81 5.70 -51.93 -0.30 0.51 16 26 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 27 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.28 8.19 6.70 -40.82 -0.27 7.92 16 31 H 0.42 9.99 5.09 -40.94 -0.21 9.78 16 32 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.15 1.88 7.71 -52.48 -0.40 1.48 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -29.66 309.60 -6.12 -35.78 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.07 Total: 9.15 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.41 Total: -0.29 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.40 Total: -50.26 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.66 Total: -16.41 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.66 -6.12 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.177 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds