Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08994 * 109.47024 * 306.17854 * 3 2 1 5 5 C 1.50700 * 109.47022 * 186.17611 * 3 2 1 6 6 H 1.08003 * 119.99971 * 335.11772 * 5 3 2 7 7 C 1.37874 * 120.00167 * 155.11768 * 5 3 2 8 8 N 1.31521 * 119.99717 * 357.15596 * 7 5 3 9 9 Si 1.86798 * 119.99980 * 176.87865 * 7 5 3 10 10 H 1.48491 * 109.47259 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46896 * 120.00063 * 9 7 5 12 12 H 1.48499 * 109.47117 * 239.99485 * 9 7 5 13 13 N 1.46503 * 109.47201 * 66.17988 * 3 2 1 14 14 C 1.38345 * 119.99511 * 274.99801 * 13 3 2 15 15 N 1.32394 * 119.80563 * 354.47027 * 14 13 3 16 16 C 1.31860 * 121.80445 * 179.97438 * 15 14 13 17 17 C 1.38586 * 121.20663 * 0.02562 * 16 15 14 18 18 F 1.35091 * 120.27306 * 180.02562 * 17 16 15 19 19 C 1.38480 * 119.45628 * 359.97438 * 17 16 15 20 20 C 1.40063 * 118.34380 * 359.73381 * 19 17 16 21 21 C 1.47288 * 120.60085 * 180.28558 * 20 19 17 22 22 O 1.21526 * 120.00041 * 185.06135 * 21 20 19 23 23 O 1.34770 * 120.00064 * 5.06701 * 21 20 19 24 24 C 1.45205 * 116.99753 * 180.02562 * 23 21 20 25 25 H 1.09000 * 109.47237 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.47032 * 60.00460 * 1 2 3 27 27 H 1.09007 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47208 * 239.99609 * 2 1 3 29 29 H 1.09006 * 109.46767 * 119.99897 * 2 1 3 30 30 H 0.96993 * 120.00076 * 5.14694 * 8 7 5 31 31 H 0.96998 * 120.00074 * 94.99530 * 13 3 2 32 32 H 1.08004 * 119.39871 * 179.97438 * 16 15 14 33 33 H 1.08006 * 120.82378 * 179.97438 * 19 17 16 34 34 H 1.08999 * 109.46566 * 179.97438 * 24 23 21 35 35 H 1.08996 * 109.46504 * 299.99349 * 24 23 21 36 36 H 1.08998 * 109.47347 * 59.99785 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5892 1.9872 -0.8295 5 6 3.5392 1.4453 -0.1529 6 1 4.1148 0.5842 0.1532 7 6 4.1761 2.5470 -0.6834 8 7 3.4711 3.5730 -1.1078 9 14 6.0405 2.5857 -0.7923 10 1 6.5945 1.3206 -0.2468 11 1 6.4504 2.7335 -2.2120 12 1 6.5586 3.7336 -0.0055 13 7 1.6768 2.0889 1.2636 14 6 0.4298 2.6699 1.4099 15 7 -0.3907 2.7369 0.3730 16 6 -1.5878 3.2815 0.4682 17 6 -2.0424 3.8115 1.6653 18 9 -3.2726 4.3645 1.7416 19 6 -1.2258 3.7685 2.7828 20 6 0.0391 3.1798 2.6598 21 6 0.9457 3.1018 3.8181 22 8 2.0742 2.6729 3.6786 23 8 0.5236 3.5058 5.0325 24 6 1.4708 3.4009 6.1281 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.5097 3.5871 -0.9798 31 1 2.3106 2.1094 1.9976 32 1 -2.2254 3.3159 -0.4029 33 1 -1.5576 4.1753 3.7267 34 1 1.0052 3.7587 7.0464 35 1 1.7680 2.3597 6.2528 36 1 2.3502 4.0059 5.9073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161048745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -110.133458 kcal Electronic energy + Delta-G solvation = -22731.465903 eV Core-core repulsion = 19129.729549 eV Total energy + Delta-G solvation = -3601.736354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.69999 -42.03010 -40.63143 -38.12801 -37.48063 -34.55980 -33.91957 -33.32611 -30.54099 -28.85073 -27.95399 -25.94074 -25.09598 -23.78568 -22.61150 -21.75569 -19.57370 -19.17828 -18.57577 -18.53086 -17.59886 -17.48761 -16.90871 -16.65736 -16.13668 -15.73244 -15.68917 -15.34659 -14.85672 -14.78132 -14.52977 -14.45805 -14.05838 -13.95298 -13.52139 -13.01201 -12.87374 -12.64490 -12.56474 -12.22704 -11.96513 -11.88467 -11.84125 -11.76734 -11.05006 -11.01933 -10.81665 -10.54727 -10.44502 -8.73018 -8.51482 -6.52903 -0.48739 0.28497 1.38115 1.50160 1.56404 1.59977 1.75152 2.39845 2.52109 2.70589 3.10326 3.20954 3.51885 3.72568 3.73762 4.12703 4.27480 4.28461 4.30814 4.32594 4.35369 4.53151 4.60507 4.68202 4.78007 4.93223 5.08048 5.15013 5.19236 5.23888 5.46864 5.59849 5.79402 6.10294 6.37529 6.43044 6.56041 6.69028 7.27885 7.34569 8.65082 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.006674 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.893243 B = 4194.242928 C = 5158.452800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C 0.240 3.760 4 H 0.038 0.962 5 C -0.618 4.618 6 H 0.051 0.949 7 C -0.014 4.014 8 N -0.917 5.917 9 Si 1.117 2.883 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.435 3.565 15 N -0.535 5.535 16 C 0.177 3.823 17 C -0.054 4.054 18 F -0.133 7.133 19 C 0.012 3.988 20 C -0.280 4.280 21 C 0.524 3.476 22 O -0.541 6.541 23 O -0.350 6.350 24 C 0.029 3.971 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.409 0.591 32 H 0.198 0.802 33 H 0.178 0.822 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -0.134 10.416 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.139 3.861 4 H 0.056 0.944 5 C -0.656 4.656 6 H 0.069 0.931 7 C -0.217 4.217 8 N -0.552 5.552 9 Si 0.939 3.061 10 H -0.195 1.195 11 H -0.200 1.200 12 H -0.211 1.211 13 N -0.303 5.303 14 C 0.193 3.807 15 N -0.252 5.252 16 C 0.011 3.989 17 C -0.079 4.079 18 F -0.112 7.112 19 C -0.015 4.015 20 C -0.290 4.290 21 C 0.373 3.627 22 O -0.433 6.433 23 O -0.266 6.266 24 C -0.064 4.064 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.256 0.744 32 H 0.215 0.785 33 H 0.195 0.805 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.919 0.147 8.969 11.965 hybrid contribution -1.220 -0.393 1.607 2.056 sum -9.139 -0.246 10.576 13.980 Atomic orbital electron populations 1.21687 0.95035 1.00392 1.01232 1.21740 0.96086 0.97073 1.00372 1.18926 0.94063 0.90187 0.82963 0.94441 1.22470 0.92793 1.03911 1.46471 0.93098 1.27313 1.10859 0.91988 0.91538 1.70815 1.09104 1.32605 1.42678 0.82931 0.69353 0.76348 0.77429 1.19524 1.19981 1.21083 1.47470 1.10916 1.52835 1.19032 1.18951 0.87523 0.86525 0.87666 1.67737 1.05203 1.22937 1.29332 1.23415 0.90836 0.87480 0.97205 1.18047 0.84171 1.09415 0.96224 1.91478 1.38893 1.83950 1.96897 1.21716 0.89560 0.90684 0.99491 1.19119 0.98420 1.19690 0.91784 1.20810 0.85069 0.73388 0.83474 1.90575 1.22046 1.46033 1.84687 1.86512 1.45704 1.77156 1.17215 1.23618 0.92848 1.02979 0.86941 0.94576 0.92575 0.92390 0.92090 0.94063 0.92579 0.74360 0.78522 0.80450 0.83989 0.91955 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.54 71.98 0.61 -4.00 16 2 C -0.11 -4.90 5.58 30.60 0.17 -4.73 16 3 C 0.24 12.06 1.92 44.24 0.08 12.14 16 4 H 0.04 2.08 6.05 -2.39 -0.01 2.06 16 5 C -0.62 -34.20 8.50 25.60 0.22 -33.98 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C -0.01 -0.81 5.46 84.65 0.46 -0.35 16 8 N -0.92 -55.27 13.62 21.45 0.29 -54.98 16 9 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.67 -31.86 5.03 -327.45 -1.65 -33.51 16 14 C 0.44 18.07 5.89 133.63 0.79 18.85 16 15 N -0.53 -20.46 6.87 -192.28 -1.32 -21.78 16 16 C 0.18 5.22 11.15 84.77 0.95 6.17 16 17 C -0.05 -1.47 7.32 22.41 0.16 -1.30 16 18 F -0.13 -3.33 17.28 44.97 0.78 -2.56 16 19 C 0.01 0.32 9.71 22.77 0.22 0.54 16 20 C -0.28 -9.96 5.91 -19.89 -0.12 -10.08 16 21 C 0.52 18.63 7.88 70.20 0.55 19.19 16 22 O -0.54 -22.70 13.46 19.75 0.27 -22.43 16 23 O -0.35 -9.59 9.90 -56.81 -0.56 -10.16 16 24 C 0.03 0.59 10.57 113.37 1.20 1.78 16 25 H 0.04 1.35 5.70 -2.39 -0.01 1.34 16 26 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.75 16 30 H 0.26 16.26 6.70 -92.71 -0.62 15.64 16 31 H 0.41 20.47 5.09 -94.53 -0.48 19.99 16 32 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.18 3.85 7.71 -2.91 -0.02 3.83 16 34 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.32 309.60 5.94 -60.38 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.79 Total: 28.70 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.30 Total: 4.23 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -2.68 Total: -110.27 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.30 Total: -32.59 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -66.32 5.94 -60.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.753 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds