Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.33824 * 124.51590 * 90.00150 * 3 2 1 5 5 C 1.37474 * 115.09485 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.30190 * 359.97438 * 5 4 3 7 7 C 1.46580 * 125.46186 * 180.02562 * 6 5 4 8 8 O 1.21696 * 119.99857 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00101 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47409 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47318 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47130 * 179.97438 * 12 11 10 14 14 C 1.36938 * 120.00142 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99923 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99984 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99889 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47063 * 89.99972 * 18 16 14 20 20 H 1.48493 * 109.47241 * 210.00170 * 18 16 14 21 21 H 1.48507 * 109.47052 * 330.00276 * 18 16 14 22 22 S 1.70613 * 124.52618 * 269.70300 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.07993 * 122.45555 * 359.97438 * 4 3 2 29 29 H 1.07997 * 123.34865 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00059 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.47127 * 300.00374 * 10 9 7 32 32 H 1.08997 * 109.47163 * 59.99790 * 10 9 7 33 33 H 1.09004 * 109.47183 * 300.00219 * 11 10 9 34 34 H 1.09006 * 109.47058 * 59.99817 * 11 10 9 35 35 H 1.08998 * 109.47384 * 299.99891 * 12 11 10 36 36 H 1.09003 * 109.47053 * 60.00521 * 12 11 10 37 37 H 0.97005 * 120.00111 * 0.02562 * 13 12 11 38 38 H 0.97000 * 119.99783 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1027 5 6 2.7368 3.4145 0.8776 6 6 2.8461 3.7236 -0.4489 7 6 3.3005 5.0087 -0.9880 8 8 3.6187 5.9074 -0.2318 9 7 3.3658 5.1949 -2.3213 10 6 3.8205 6.4790 -2.8601 11 6 3.8005 6.4265 -4.3890 12 6 4.2747 7.7678 -4.9518 13 7 4.2561 7.7172 -6.4158 14 6 4.6431 8.8107 -7.1437 15 1 4.9625 9.7103 -6.6384 16 6 4.6250 8.7629 -8.5309 17 7 4.9975 9.8137 -9.2304 18 14 4.0734 7.2068 -9.4047 19 1 2.6074 7.2617 -9.6351 20 1 4.7756 7.0958 -10.7084 21 1 4.3986 6.0258 -8.5651 22 16 2.3616 2.3301 -1.4056 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.1440 1.7375 2.0965 29 1 2.9808 4.1061 1.6704 30 1 3.1119 4.4787 -2.9241 31 1 3.1577 7.2728 -2.5155 32 1 4.8354 6.6785 -2.5163 33 1 4.4631 5.6326 -4.7340 34 1 2.7853 6.2272 -4.7325 35 1 3.6118 8.5614 -4.6069 36 1 5.2898 7.9674 -4.6084 37 1 3.9697 6.9092 -6.8696 38 1 4.9852 9.7802 -10.1998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161994985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -8.174835 kcal Electronic energy + Delta-G solvation = -18499.509884 eV Core-core repulsion = 15468.407963 eV Total energy + Delta-G solvation = -3031.101921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88940 -38.26879 -36.18913 -34.51077 -34.17387 -32.08067 -30.36295 -28.98776 -26.17390 -24.89381 -22.82817 -22.43350 -21.48587 -21.16082 -19.47680 -18.21176 -17.45276 -16.56357 -15.94262 -15.81287 -15.30900 -14.70312 -14.67054 -14.43340 -14.20624 -13.81363 -13.52282 -13.21083 -12.82778 -12.72827 -12.62932 -12.24112 -12.06135 -11.97241 -11.60907 -11.23391 -11.19102 -11.05773 -10.86422 -10.72721 -10.22278 -10.12285 -9.60319 -9.28822 -8.97317 -8.92618 -8.91021 -7.25495 -5.77570 -3.13786 0.17445 1.09152 1.51643 2.06872 2.98134 3.03359 3.35793 3.38100 3.43946 4.18613 4.51489 4.57827 4.60305 4.75093 4.89847 4.91353 5.04595 5.17781 5.20813 5.33682 5.42008 5.47222 5.52799 5.64281 5.67894 5.74521 5.84038 5.89340 5.93363 6.01896 6.11587 6.28491 6.67016 6.70186 7.28252 7.98177 7.99243 8.41180 9.19817 9.91883 10.11337 11.40786 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.002772 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.919153 B =10099.238449 C =11030.281302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.191 4.191 4 C -0.154 4.154 5 C -0.052 4.052 6 C -0.267 4.267 7 C 0.588 3.412 8 O -0.530 6.530 9 N -0.724 5.724 10 C 0.123 3.877 11 C -0.143 4.143 12 C 0.161 3.839 13 N -0.757 5.757 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.887 3.113 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 S 0.200 5.800 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.397 0.603 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.361 0.639 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -22.786 20.917 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.311 4.311 4 C -0.185 4.185 5 C -0.085 4.085 6 C -0.387 4.387 7 C 0.374 3.626 8 O -0.408 6.408 9 N -0.375 5.375 10 C 0.000 4.000 11 C -0.181 4.181 12 C 0.033 3.967 13 N -0.403 5.403 14 C -0.375 4.375 15 H 0.109 0.891 16 C -0.193 4.193 17 N -0.582 5.582 18 Si 0.717 3.283 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 S 0.468 5.532 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.193 0.807 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.320 -22.164 19.815 30.872 hybrid contribution -0.391 -1.137 0.522 1.311 sum -8.711 -23.301 20.336 32.131 Atomic orbital electron populations 1.21809 0.93935 1.02277 1.02698 1.20172 0.96473 0.89299 1.03622 1.24281 1.06924 1.02147 0.97761 1.19962 1.04750 0.94145 0.99602 1.20760 0.96360 0.96186 0.95223 1.24624 1.16597 0.99347 0.98139 1.16944 0.77716 0.85619 0.82331 1.90839 1.49187 1.42751 1.58024 1.45951 1.68095 1.17314 1.06160 1.21398 1.00697 0.84192 0.93723 1.22012 1.02436 1.00663 0.93010 1.20493 0.98399 0.93056 0.84750 1.42687 1.81808 1.14909 1.00866 1.19074 1.36837 0.92573 0.89053 0.89128 1.24695 1.01420 0.97106 0.96055 1.69704 1.53885 1.28761 1.05812 0.86512 0.78515 0.83905 0.79368 1.21063 1.21698 1.20375 1.83025 1.59952 1.02506 1.07697 0.92129 0.92291 0.91784 0.89729 0.90523 0.83846 0.82911 0.76893 0.90802 0.90805 0.91259 0.91253 0.95081 0.95139 0.80685 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.90 37.16 0.37 -0.33 16 2 C -0.06 -0.29 6.36 -27.88 -0.18 -0.46 16 3 C -0.19 -1.41 5.53 -35.86 -0.20 -1.61 16 4 C -0.15 -1.20 10.00 -41.41 -0.41 -1.61 16 5 C -0.05 -0.51 10.01 -40.44 -0.40 -0.92 16 6 C -0.27 -2.91 6.45 -36.80 -0.24 -3.15 16 7 C 0.59 7.93 7.78 -12.90 -0.10 7.83 16 8 O -0.53 -8.96 16.84 5.19 0.09 -8.87 16 9 N -0.72 -8.67 5.55 -61.65 -0.34 -9.01 16 10 C 0.12 1.63 5.67 -4.05 -0.02 1.61 16 11 C -0.14 -2.04 5.44 -26.74 -0.15 -2.19 16 12 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16 13 N -0.76 -18.04 5.41 -59.91 -0.32 -18.37 16 14 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 15 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 16 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 17 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 18 Si 0.89 22.03 27.74 -169.99 -4.71 17.31 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 22 S 0.20 1.62 22.10 -107.50 -2.38 -0.75 16 23 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.40 3.88 7.59 -40.82 -0.31 3.57 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 38 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -34.08 336.88 -9.05 -43.13 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.62 Total: 5.25 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.61 Total: -5.01 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.11 Total: -56.14 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.08 -9.05 -43.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161994985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.953 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds