Wall clock time and date at job start Tue Mar 31 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47306 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.47304 * 180.02562 * 9 8 7 11 11 C 1.36936 * 119.99887 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00079 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99775 * 180.02562 * 11 10 9 14 14 N 1.31614 * 120.00137 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99982 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46978 * 90.00617 * 15 13 11 17 17 H 1.48498 * 109.47385 * 210.00290 * 15 13 11 18 18 H 1.48494 * 109.47337 * 330.00924 * 15 13 11 19 19 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 20 20 C 1.33386 * 125.20196 * 120.00529 * 19 2 1 21 21 C 1.38420 * 114.92399 * 179.97438 * 20 19 2 22 22 C 1.33388 * 114.91890 * 0.02562 * 21 20 19 23 23 S 1.75882 * 125.20367 * 299.69442 * 19 2 1 24 24 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 26 26 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 27 27 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 28 28 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 29 29 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 30 30 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 31 31 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 32 32 H 1.08995 * 109.47215 * 299.99822 * 9 8 7 33 33 H 1.09001 * 109.47513 * 60.00266 * 9 8 7 34 34 H 0.96993 * 119.99778 * 359.97438 * 10 9 8 35 35 H 0.97001 * 120.00539 * 179.97438 * 14 13 11 36 36 H 1.08004 * 122.54070 * 359.97438 * 20 19 2 37 37 H 1.08004 * 122.54162 * 180.02562 * 21 20 19 38 38 H 1.08002 * 125.20488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 6 1.6714 -0.2294 4.8998 9 6 2.1768 -0.9540 6.1490 10 7 1.6840 -0.2666 7.3453 11 6 2.0107 -0.7375 8.5890 12 1 2.6312 -1.6159 8.6879 13 6 1.5434 -0.0865 9.7224 14 7 1.8568 -0.5394 10.9177 15 14 0.4695 1.4324 9.5511 16 1 -0.9579 1.0261 9.4992 17 1 0.6875 2.3267 10.7164 18 1 0.8251 2.1517 8.3016 19 6 2.0322 -0.7104 -1.2306 20 6 2.8024 -0.1646 -2.1730 21 6 3.1403 -1.0125 -3.2135 22 6 2.6441 -2.2469 -3.1164 23 16 1.6989 -2.3881 -1.6398 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.1445 0.5353 2.5435 28 1 1.8217 -1.9751 3.6463 29 1 3.2755 -0.9481 3.6549 30 1 2.0356 0.7981 4.9040 31 1 0.5815 -0.2285 4.8958 32 1 1.8130 -1.9815 6.1452 33 1 3.2668 -0.9545 6.1529 34 1 1.1271 0.5225 7.2564 35 1 1.5306 -0.0843 11.7098 36 1 3.1370 0.8613 -2.1276 37 1 3.7589 -0.6985 -4.0414 38 1 2.8022 -3.0396 -3.8326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166491970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:41 Heat of formation + Delta-G solvation = 0.625700 kcal Electronic energy + Delta-G solvation = -18843.045758 eV Core-core repulsion = 15812.325457 eV Total energy + Delta-G solvation = -3030.720301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12726 -37.95858 -36.21282 -34.56691 -34.17547 -31.95943 -30.07870 -28.78451 -25.88908 -24.86281 -23.33504 -22.11410 -21.33329 -20.32718 -19.61401 -17.87942 -17.40766 -16.78882 -15.99223 -15.89204 -15.52427 -14.76086 -14.55434 -14.12355 -13.86431 -13.58438 -13.27840 -12.94669 -12.82820 -12.70173 -12.55209 -12.34666 -12.11256 -11.94481 -11.80624 -11.21776 -11.06096 -10.87687 -10.81292 -10.73058 -10.18922 -9.93366 -9.61271 -9.15790 -8.92352 -8.88296 -8.53745 -7.26571 -5.78524 -3.14824 0.78589 1.47530 1.87009 2.46877 2.50563 3.08565 3.34553 3.36810 3.42927 4.16766 4.46755 4.56718 4.64485 4.83022 4.87103 4.93581 5.17393 5.20225 5.27723 5.34167 5.38840 5.47480 5.51895 5.66863 5.77467 5.86312 5.89936 5.93545 6.06082 6.11398 6.25052 6.33483 6.66219 6.69298 7.34075 7.97477 8.06290 8.40188 9.18825 9.90843 10.10287 11.39832 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045347 B = 0.002565 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.309530 B =10913.339379 C =11200.138988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 H 0.114 0.886 4 C 0.511 3.489 5 O -0.526 6.526 6 N -0.726 5.726 7 C 0.123 3.877 8 C -0.141 4.141 9 C 0.160 3.840 10 N -0.757 5.757 11 C -0.246 4.246 12 H 0.091 0.909 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.159 4.159 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.225 4.225 23 S 0.141 5.859 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.400 0.600 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 2.533 -30.518 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 H 0.131 0.869 4 C 0.295 3.705 5 O -0.401 6.401 6 N -0.378 5.378 7 C -0.001 4.001 8 C -0.180 4.180 9 C 0.033 3.967 10 N -0.403 5.403 11 C -0.376 4.376 12 H 0.109 0.891 13 C -0.193 4.193 14 N -0.582 5.582 15 Si 0.717 3.283 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.277 4.277 20 C -0.170 4.170 21 C -0.168 4.168 22 C -0.361 4.361 23 S 0.406 5.594 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.855 0.458 -29.722 29.862 hybrid contribution -0.087 2.654 -0.574 2.717 sum -2.941 3.112 -30.296 30.597 Atomic orbital electron populations 1.21865 0.91611 1.03356 1.03378 1.19831 0.97668 0.99920 0.89077 0.86852 1.20415 0.80661 0.84930 0.84469 1.90756 1.37070 1.25774 1.86517 1.46030 1.53816 1.32220 1.05717 1.21351 0.99668 0.96429 0.82651 1.21994 1.01435 1.00342 0.94204 1.20497 0.96970 0.94903 0.84374 1.42686 1.62336 1.33003 1.02239 1.19072 1.26739 1.10159 0.81591 0.89144 1.24697 1.00527 0.98982 0.95077 1.69701 1.49696 1.41981 0.96775 0.86509 0.80992 0.83912 0.76853 1.21069 1.21694 1.20401 1.23913 1.05917 0.97744 1.00105 1.20054 1.00536 1.01531 0.94888 1.20067 1.03075 0.93211 1.00462 1.25716 1.06551 1.01520 1.02303 1.84343 1.50071 1.09226 1.15730 0.91731 0.91123 0.90822 0.76588 0.91119 0.91151 0.91351 0.91325 0.95158 0.95220 0.80698 0.93018 0.84524 0.84525 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.01 37.16 0.33 -0.61 16 2 C -0.04 -0.35 3.10 -92.92 -0.29 -0.64 16 3 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 4 C 0.51 5.98 7.13 -10.98 -0.08 5.90 16 5 O -0.53 -8.27 15.23 5.55 0.08 -8.18 16 6 N -0.73 -7.52 5.44 -60.30 -0.33 -7.85 16 7 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 8 C -0.14 -1.95 5.44 -26.73 -0.15 -2.09 16 9 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 10 N -0.76 -17.92 5.41 -59.91 -0.32 -18.24 16 11 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 12 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 13 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 14 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 15 Si 0.89 21.92 27.74 -169.99 -4.71 17.21 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 19 C -0.16 -1.59 4.61 -36.00 -0.17 -1.75 16 20 C -0.14 -1.27 10.01 -41.21 -0.41 -1.68 16 21 C -0.14 -1.19 10.18 -41.21 -0.42 -1.61 16 22 C -0.22 -2.01 11.23 29.04 0.33 -1.68 16 23 S 0.14 1.47 22.17 -107.50 -2.38 -0.91 16 24 H 0.06 0.49 8.01 -51.93 -0.42 0.08 16 25 H 0.07 0.36 7.55 -51.93 -0.39 -0.03 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.40 3.03 7.88 -40.82 -0.32 2.70 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -34.59 333.91 -8.60 -43.19 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.59 Total: 5.30 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.15 Total: -6.86 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.12 Total: -54.78 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.59 -8.60 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166491970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.818 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds