Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47306 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.47304 * 180.02562 * 9 8 7 11 11 C 1.36936 * 119.99887 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00079 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99775 * 180.02562 * 11 10 9 14 14 N 1.31614 * 120.00137 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99982 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46978 * 90.00617 * 15 13 11 17 17 H 1.48498 * 109.47385 * 210.00290 * 15 13 11 18 18 H 1.48494 * 109.47337 * 330.00924 * 15 13 11 19 19 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 20 20 C 1.33386 * 125.20196 * 120.00529 * 19 2 1 21 21 C 1.38420 * 114.92399 * 179.97438 * 20 19 2 22 22 C 1.33388 * 114.91890 * 0.02562 * 21 20 19 23 23 S 1.75882 * 125.20367 * 299.69442 * 19 2 1 24 24 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 26 26 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 27 27 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 28 28 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 29 29 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 30 30 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 31 31 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 32 32 H 1.08995 * 109.47215 * 299.99822 * 9 8 7 33 33 H 1.09001 * 109.47513 * 60.00266 * 9 8 7 34 34 H 0.96993 * 119.99778 * 359.97438 * 10 9 8 35 35 H 0.97001 * 120.00539 * 179.97438 * 14 13 11 36 36 H 1.08004 * 122.54070 * 359.97438 * 20 19 2 37 37 H 1.08004 * 122.54162 * 180.02562 * 21 20 19 38 38 H 1.08002 * 125.20488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 6 1.6714 -0.2294 4.8998 9 6 2.1768 -0.9540 6.1490 10 7 1.6840 -0.2666 7.3453 11 6 2.0107 -0.7375 8.5890 12 1 2.6312 -1.6159 8.6879 13 6 1.5434 -0.0865 9.7224 14 7 1.8568 -0.5394 10.9177 15 14 0.4695 1.4324 9.5511 16 1 -0.9579 1.0261 9.4992 17 1 0.6875 2.3267 10.7164 18 1 0.8251 2.1517 8.3016 19 6 2.0322 -0.7104 -1.2306 20 6 2.8024 -0.1646 -2.1730 21 6 3.1403 -1.0125 -3.2135 22 6 2.6441 -2.2469 -3.1164 23 16 1.6989 -2.3881 -1.6398 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.1445 0.5353 2.5435 28 1 1.8217 -1.9751 3.6463 29 1 3.2755 -0.9481 3.6549 30 1 2.0356 0.7981 4.9040 31 1 0.5815 -0.2285 4.8958 32 1 1.8130 -1.9815 6.1452 33 1 3.2668 -0.9545 6.1529 34 1 1.1271 0.5225 7.2564 35 1 1.5306 -0.0843 11.7098 36 1 3.1370 0.8613 -2.1276 37 1 3.7589 -0.6985 -4.0414 38 1 2.8022 -3.0396 -3.8326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166491970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -23.421828 kcal Electronic energy + Delta-G solvation = -18844.088537 eV Core-core repulsion = 15812.325457 eV Total energy + Delta-G solvation = -3031.763080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01470 -38.65651 -37.61986 -35.96287 -34.97246 -33.78414 -31.64791 -29.46140 -27.25556 -25.68477 -24.46750 -23.47981 -22.69676 -21.28193 -20.26174 -19.67660 -18.47225 -17.61801 -16.98726 -16.86373 -16.47258 -16.32411 -15.75972 -15.54868 -14.89446 -14.78689 -14.56285 -14.04563 -13.80128 -13.77480 -13.55519 -13.21222 -13.10832 -12.87608 -12.65131 -12.53613 -12.48060 -12.40229 -12.08611 -12.00793 -11.81015 -11.52394 -10.98450 -10.87247 -10.11382 -9.56574 -9.32698 -9.28986 -8.03622 -5.38954 0.10335 0.78606 1.19162 1.38347 1.44060 1.51452 1.60229 1.82279 2.23566 2.49088 3.27392 3.51040 3.55836 3.77478 4.04698 4.09352 4.22737 4.24323 4.26958 4.34488 4.65350 4.70607 4.70927 4.71654 4.82318 4.85152 4.90201 5.18891 5.23301 5.25005 5.28259 5.40186 5.41580 5.62545 5.73945 6.19813 6.53625 7.06710 7.22716 7.80961 8.02346 9.17891 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.045347 B = 0.002565 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.309530 B =10913.339379 C =11200.138988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 H 0.143 0.857 4 C 0.507 3.493 5 O -0.572 6.572 6 N -0.713 5.713 7 C 0.132 3.868 8 C -0.121 4.121 9 C 0.153 3.847 10 N -0.758 5.758 11 C -0.243 4.243 12 H 0.052 0.948 13 C -0.069 4.069 14 N -0.986 5.986 15 Si 0.964 3.036 16 H -0.276 1.276 17 H -0.296 1.296 18 H -0.244 1.244 19 C -0.171 4.171 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.226 4.226 23 S 0.085 5.915 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.417 0.583 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.369 0.631 35 H 0.259 0.741 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 5.345 -32.835 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 H 0.160 0.840 4 C 0.294 3.706 5 O -0.451 6.451 6 N -0.366 5.366 7 C 0.007 3.993 8 C -0.159 4.159 9 C 0.027 3.973 10 N -0.404 5.404 11 C -0.374 4.374 12 H 0.070 0.930 13 C -0.260 4.260 14 N -0.636 5.636 15 Si 0.790 3.210 16 H -0.202 1.202 17 H -0.223 1.223 18 H -0.169 1.169 19 C -0.289 4.289 20 C -0.173 4.173 21 C -0.174 4.174 22 C -0.362 4.362 23 S 0.350 5.650 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.255 0.745 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.987 3.296 -32.099 32.513 hybrid contribution 0.360 1.673 0.104 1.715 sum -3.626 4.969 -31.995 32.581 Atomic orbital electron populations 1.21882 0.90085 1.02851 1.05057 1.19909 0.98798 1.00495 0.86597 0.83951 1.21037 0.79765 0.84379 0.85452 1.90742 1.39236 1.27902 1.87186 1.45844 1.53595 1.32455 1.04688 1.21063 0.98965 0.96031 0.83225 1.21757 1.02202 1.00259 0.91725 1.20658 0.96614 0.95010 0.85044 1.42645 1.62483 1.33493 1.01797 1.19041 1.25486 1.08863 0.83973 0.93038 1.25657 1.02724 1.03177 0.94462 1.69906 1.51709 1.44106 0.97850 0.85277 0.78692 0.79099 0.77896 1.20173 1.22311 1.16853 1.24150 1.06675 0.96971 1.01080 1.20422 0.99678 1.02663 0.94553 1.20433 1.02932 0.92961 1.01046 1.25977 1.06102 1.02424 1.01679 1.84511 1.51601 1.11244 1.17673 0.93355 0.89208 0.89361 0.74543 0.92296 0.92286 0.89856 0.89748 0.95834 0.95910 0.79696 0.93240 0.82257 0.82159 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.01 71.98 0.65 -0.84 16 2 C -0.04 -0.51 3.10 -12.29 -0.04 -0.55 16 3 H 0.14 1.24 8.08 -2.39 -0.02 1.22 16 4 C 0.51 11.09 7.13 87.66 0.62 11.72 16 5 O -0.57 -17.94 15.23 -3.04 -0.05 -17.99 16 6 N -0.71 -13.02 5.44 -463.07 -2.52 -15.54 16 7 C 0.13 3.12 5.67 86.38 0.49 3.61 16 8 C -0.12 -3.01 5.44 30.59 0.17 -2.85 16 9 C 0.15 5.64 6.26 86.38 0.54 6.18 16 10 N -0.76 -34.87 5.41 -343.44 -1.86 -36.72 16 11 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 12 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.99 -63.66 13.97 21.65 0.30 -63.36 16 15 Si 0.96 44.44 27.74 68.60 1.90 46.34 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.24 -9.82 6.52 99.48 0.65 -9.17 16 19 C -0.17 -3.17 4.61 24.59 0.11 -3.06 16 20 C -0.14 -2.28 10.01 21.21 0.21 -2.06 16 21 C -0.14 -2.20 10.18 21.22 0.22 -1.98 16 22 C -0.23 -3.82 11.23 66.72 0.75 -3.07 16 23 S 0.09 1.78 22.17 -56.49 -1.25 0.53 16 24 H 0.05 0.68 8.01 -2.38 -0.02 0.66 16 25 H 0.09 0.59 7.55 -2.38 -0.02 0.57 16 26 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.42 4.71 7.88 -92.71 -0.73 3.98 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.37 15.59 5.53 -92.71 -0.51 15.08 16 35 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -77.23 333.91 1.36 -75.87 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.24 Total: 20.54 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.07 Total: -9.67 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.08 Total: -115.62 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.05 Total: -17.99 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.25 Total: 0.53 kcal Total: -77.23 1.36 -75.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166491970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds