Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47092 * 2 1 4 4 C 1.52992 * 109.47092 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46910 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99877 * 265.56408 * 5 4 3 7 7 H 1.07999 * 119.99626 * 145.67034 * 6 5 4 8 8 C 1.38948 * 120.00270 * 325.67562 * 6 5 4 9 9 N 1.31411 * 120.00007 * 338.40213 * 8 6 5 10 10 Si 1.86806 * 120.00176 * 158.40420 * 8 6 5 11 11 H 1.48500 * 109.46831 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46969 * 119.99966 * 10 8 6 13 13 H 1.48501 * 109.47030 * 239.99816 * 10 8 6 14 14 C 1.34771 * 119.99855 * 85.56895 * 5 4 3 15 15 O 1.21289 * 120.00465 * 359.97438 * 14 5 4 16 16 C 1.50702 * 119.99934 * 180.02562 * 14 5 4 17 17 C 1.50701 * 109.47404 * 179.97438 * 16 14 5 18 18 C 1.33642 * 122.75420 * 125.00952 * 17 16 14 19 19 S 1.76192 * 107.92503 * 179.97438 * 18 17 16 20 20 C 1.70974 * 90.28362 * 0.02562 * 19 18 17 21 21 C 1.50704 * 124.91464 * 180.02562 * 20 19 18 22 22 N 1.29030 * 110.16826 * 359.97438 * 20 19 18 23 23 H 1.08994 * 109.47628 * 60.00175 * 1 2 3 24 24 H 1.09004 * 109.47217 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47398 * 299.99118 * 1 2 3 26 26 H 1.09003 * 109.47559 * 240.00367 * 2 1 3 27 27 H 1.09002 * 109.47680 * 120.00140 * 2 1 3 28 28 H 1.09000 * 109.46279 * 60.00196 * 3 2 1 29 29 H 1.08994 * 109.46741 * 300.00368 * 3 2 1 30 30 H 1.09003 * 109.47559 * 60.00367 * 4 3 2 31 31 H 1.09002 * 109.47680 * 300.00140 * 4 3 2 32 32 H 0.97001 * 120.00485 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47365 * 59.99110 * 16 14 5 34 34 H 1.09002 * 109.46811 * 299.99228 * 16 14 5 35 35 H 1.08001 * 126.03360 * 359.93079 * 18 17 16 36 36 H 1.09001 * 109.46563 * 269.99347 * 21 20 19 37 37 H 1.08993 * 109.47445 * 29.98933 * 21 20 19 38 38 H 1.09002 * 109.47234 * 149.99765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.3727 3.4402 -1.1835 7 1 4.1957 4.4987 -1.3048 8 6 4.9191 2.7032 -2.2270 9 7 5.5223 1.5621 -1.9801 10 14 4.7964 3.3344 -3.9809 11 1 4.0745 4.6320 -3.9906 12 1 6.1609 3.5223 -4.5359 13 1 4.0558 2.3502 -4.8105 14 6 4.1982 3.4885 1.1640 15 8 3.9196 2.9434 2.2110 16 6 4.7000 4.9096 1.1646 17 6 4.7640 5.4191 2.5814 18 6 5.8782 5.9258 3.1179 19 16 5.5157 6.3972 4.7764 20 6 3.9023 5.8655 4.5839 21 6 2.8396 5.9302 5.6505 22 7 3.7258 5.4017 3.3928 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6765 1.9563 -0.8899 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9286 0.8891 32 1 5.9034 1.0473 -2.7085 33 1 4.0214 5.5347 0.5843 34 1 5.6948 4.9438 0.7206 35 1 6.8325 6.0276 2.6224 36 1 2.8533 5.0092 6.2332 37 1 3.0348 6.7782 6.3069 38 1 1.8623 6.0499 5.1830 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176123882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -4.789302 kcal Electronic energy + Delta-G solvation = -20049.688935 eV Core-core repulsion = 17018.733822 eV Total energy + Delta-G solvation = -3030.955113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67230 -38.19186 -35.23845 -33.88324 -32.62479 -31.45600 -29.56166 -28.18444 -27.10711 -24.85951 -23.21224 -22.04769 -20.39132 -19.40803 -19.03848 -17.57959 -16.32700 -15.94524 -15.04056 -14.69334 -14.65334 -14.35567 -14.05618 -13.94739 -13.37328 -13.16638 -12.83100 -12.63145 -12.19183 -12.12741 -12.01064 -11.85085 -11.53900 -11.32815 -11.21009 -10.94815 -10.77661 -10.52563 -10.43845 -10.28108 -10.15381 -9.66164 -9.20529 -9.07698 -9.01412 -8.49108 -8.16099 -7.47242 -6.36272 -4.03535 1.07575 1.69367 2.03766 3.09814 3.21472 3.24397 3.26476 3.98991 4.11924 4.42021 4.82678 5.04590 5.23152 5.48979 5.51567 5.53846 5.55767 5.58185 5.71549 5.81415 5.95297 6.13537 6.23364 6.28475 6.29141 6.35270 6.46294 6.49523 6.60764 6.72035 6.80558 6.91973 7.19882 7.38773 7.54477 7.96467 8.23782 8.40915 9.10309 9.58491 10.02371 10.64437 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.005337 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.610111 B = 5245.592928 C = 6652.236248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.442 5.442 6 C -0.339 4.339 7 H 0.089 0.911 8 C 0.043 3.957 9 N -0.858 5.858 10 Si 0.911 3.089 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.477 3.523 15 O -0.589 6.589 16 C -0.053 4.053 17 C 0.109 3.891 18 C -0.262 4.262 19 S 0.071 5.929 20 C 0.047 3.953 21 C -0.073 4.073 22 N -0.437 5.437 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.175 0.825 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 6.237 7.205 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.007 4.007 5 N -0.161 5.161 6 C -0.467 4.467 7 H 0.107 0.893 8 C -0.163 4.163 9 N -0.495 5.495 10 Si 0.737 3.263 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.205 1.205 14 C 0.265 3.735 15 O -0.473 6.473 16 C -0.095 4.095 17 C -0.023 4.023 18 C -0.401 4.401 19 S 0.324 5.676 20 C -0.232 4.232 21 C -0.133 4.133 22 N -0.151 5.151 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.192 0.808 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.503 6.051 8.278 10.555 hybrid contribution 0.123 -0.115 -1.975 1.983 sum -2.381 5.936 6.303 8.979 Atomic orbital electron populations 1.21753 0.96695 1.00591 1.01468 1.21426 0.94927 0.97862 1.01489 1.21901 0.98060 0.95347 1.01317 1.21400 0.91002 0.84894 1.03399 1.43435 1.55960 1.12089 1.04608 1.19471 1.41630 0.95392 0.90160 0.89289 1.25309 0.94314 0.96354 1.00301 1.69943 1.31847 1.14994 1.32693 0.86138 0.78101 0.79245 0.82795 1.19169 1.20766 1.20513 1.20013 0.81563 0.87968 0.83958 1.90550 1.55210 1.69887 1.31691 1.20096 1.04033 0.96273 0.89114 1.20007 0.87387 0.97527 0.97367 1.26687 1.04139 1.12333 0.96897 1.83588 1.10025 1.60884 1.13105 1.27000 0.97653 1.01809 0.96743 1.20375 0.95799 1.02908 0.94224 1.66027 1.32375 1.14728 1.01973 0.93075 0.93489 0.93083 0.92334 0.92491 0.92824 0.92476 0.87569 0.93285 0.92127 0.88606 0.87935 0.80809 0.89848 0.90593 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.15 0.37 -1.83 16 2 C -0.12 -2.10 5.93 -26.73 -0.16 -2.26 16 3 C -0.13 -2.71 5.51 -26.73 -0.15 -2.86 16 4 C 0.12 2.86 4.92 -4.04 -0.02 2.84 16 5 N -0.44 -11.27 2.55 -114.81 -0.29 -11.56 16 6 C -0.34 -8.49 8.70 -14.93 -0.13 -8.62 16 7 H 0.09 2.12 6.98 -52.49 -0.37 1.75 16 8 C 0.04 1.07 4.94 -17.47 -0.09 0.98 16 9 N -0.86 -22.46 11.31 55.50 0.63 -21.83 16 10 Si 0.91 19.17 29.60 -169.99 -5.03 14.13 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.48 11.98 7.57 -10.99 -0.08 11.90 16 15 O -0.59 -16.24 15.10 5.55 0.08 -16.16 16 16 C -0.05 -1.10 4.85 -29.03 -0.14 -1.24 16 17 C 0.11 2.14 5.64 -84.23 -0.47 1.67 16 18 C -0.26 -4.32 11.07 29.12 0.32 -3.99 16 19 S 0.07 0.99 23.18 -107.50 -2.49 -1.50 16 20 C 0.05 0.76 7.39 -13.45 -0.10 0.66 16 21 C -0.07 -0.85 10.46 36.01 0.38 -0.47 16 22 N -0.44 -8.79 9.68 -8.06 -0.08 -8.87 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.11 2.73 5.34 -51.93 -0.28 2.45 16 31 H 0.05 1.26 7.56 -51.93 -0.39 0.87 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.10 1.89 7.65 -51.93 -0.40 1.49 16 34 H 0.10 2.00 7.98 -51.93 -0.41 1.59 16 35 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.78 332.93 -8.07 -38.86 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.63 Total: 5.13 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.27 Total: -3.22 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.26 Total: -42.27 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.08 Total: -16.16 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.78 -8.07 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176123882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.067 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds