Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21612 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47373 * 120.00205 * 179.97438 * 14 13 3 17 17 C 1.40307 * 120.62581 * 270.00194 * 16 14 13 18 18 F 1.35095 * 120.85845 * 359.97438 * 17 16 14 19 19 C 1.38740 * 118.27928 * 179.97438 * 17 16 14 20 20 C 1.38146 * 119.42389 * 359.97438 * 19 17 16 21 21 N 1.31967 * 121.23851 * 0.02562 * 20 19 17 22 22 C 1.32216 * 121.88344 * 359.68041 * 21 20 19 23 23 O 1.35428 * 119.78709 * 180.29352 * 22 21 20 24 24 C 1.42897 * 117.00213 * 0.28776 * 23 22 21 25 25 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.07999 * 120.28409 * 180.02562 * 19 17 16 33 33 H 1.08005 * 119.38305 * 179.97438 * 20 19 17 34 34 H 1.08999 * 109.47058 * 180.02562 * 24 23 22 35 35 H 1.09004 * 109.46987 * 300.00282 * 24 23 22 36 36 H 1.08996 * 109.47437 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5988 1.5453 -0.1939 11 1 6.4962 -0.5189 -1.4629 12 1 6.3999 1.6158 -2.6094 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6326 0.4316 16 6 0.0451 3.3227 2.6265 17 6 -0.5919 2.5974 3.6447 18 9 -0.8621 1.2824 3.4938 19 6 -0.9373 3.2658 4.8104 20 6 -0.6465 4.6107 4.9333 21 7 -0.0464 5.2726 3.9620 22 6 0.3099 4.6847 2.8326 23 8 0.9289 5.4036 1.8661 24 6 1.1689 6.7857 2.1387 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -1.4284 2.7389 5.6152 33 1 -0.9160 5.1304 5.8409 34 1 1.6687 7.2429 1.2848 35 1 0.2196 7.2910 2.3170 36 1 1.8008 6.8774 3.0220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185579506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = -83.099742 kcal Electronic energy + Delta-G solvation = -22622.481866 eV Core-core repulsion = 19021.917782 eV Total energy + Delta-G solvation = -3600.564084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.14407 -40.78484 -38.70256 -37.90612 -35.03582 -32.62216 -32.06634 -31.26053 -30.48436 -27.43583 -26.97408 -24.67971 -23.06617 -22.91656 -20.73050 -19.39518 -18.85384 -17.93483 -17.71708 -16.39156 -16.26168 -15.86381 -15.56692 -15.31485 -15.03089 -14.80992 -14.31461 -14.09691 -13.72822 -13.29303 -13.16260 -12.67611 -12.47871 -11.98851 -11.68978 -11.46852 -11.32177 -11.24221 -10.96123 -10.82643 -10.33734 -10.23002 -10.16141 -9.70018 -9.58543 -9.12544 -9.02555 -8.71698 -8.48587 -7.83439 -6.10550 -4.19581 0.69538 0.92096 2.81954 3.17493 3.24919 3.32595 3.35303 3.38543 3.87760 3.90091 4.20796 4.38389 4.75167 4.81924 5.08623 5.20031 5.21199 5.25665 5.46347 5.54257 5.57421 5.66786 6.18139 6.43151 6.50348 6.69489 7.04668 7.08761 7.21827 7.37650 7.44122 7.54407 7.63827 7.74001 7.91701 8.19184 8.63093 8.77543 9.07232 9.47051 10.94979 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.005594 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.337862 B = 5004.005680 C = 5822.980532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.562 3.438 15 O -0.531 6.531 16 C -0.225 4.225 17 C 0.208 3.792 18 F -0.110 7.110 19 C -0.250 4.250 20 C 0.176 3.824 21 N -0.548 5.548 22 C 0.380 3.620 23 O -0.286 6.286 24 C 0.040 3.960 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.024 0.976 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 8.270 14.416 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.338 5.338 14 C 0.344 3.656 15 O -0.409 6.409 16 C -0.233 4.233 17 C 0.180 3.820 18 F -0.088 7.088 19 C -0.272 4.272 20 C 0.020 3.980 21 N -0.273 5.273 22 C 0.200 3.800 23 O -0.191 6.191 24 C -0.055 4.055 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.135 8.896 13.311 17.146 hybrid contribution 0.996 -0.938 0.330 1.407 sum -5.139 7.959 13.641 16.608 Atomic orbital electron populations 1.21857 0.98335 0.98182 1.01257 1.21937 0.92650 0.99650 1.02376 1.18871 0.94393 0.89208 0.80675 0.93072 1.21246 0.90556 1.38884 1.06305 0.92021 1.24877 0.98599 0.94818 0.95357 1.69911 1.35007 1.37695 1.09340 0.86398 0.84878 0.77754 0.78097 1.19773 1.20872 1.20876 1.46471 1.13814 1.54848 1.18662 1.17381 0.83441 0.79116 0.85651 1.90791 1.51620 1.59492 1.39004 1.20234 1.10339 0.93594 0.99109 1.17620 0.93414 0.78329 0.92603 1.91608 1.90602 1.30951 1.95670 1.21918 1.09435 0.97047 0.98766 1.22367 0.89723 0.90173 0.95734 1.67426 1.18334 1.39705 1.01816 1.19452 0.87526 0.86999 0.86034 1.86357 1.71142 1.24303 1.37288 1.22970 1.01727 0.78003 1.02825 0.94267 0.93146 0.95714 0.88139 0.94950 0.92616 0.77933 0.82876 0.81070 0.88101 0.92062 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.51 37.16 0.32 -2.92 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.87 11.30 55.43 0.63 -24.25 16 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.69 -15.29 5.02 -56.03 -0.28 -15.57 16 14 C 0.56 12.20 5.09 -12.54 -0.06 12.14 16 15 O -0.53 -13.37 14.24 5.27 0.08 -13.29 16 16 C -0.23 -3.95 5.66 -104.64 -0.59 -4.55 16 17 C 0.21 3.08 7.37 -38.62 -0.28 2.80 16 18 F -0.11 -1.77 16.93 2.25 0.04 -1.74 16 19 C -0.25 -2.63 10.08 -39.43 -0.40 -3.03 16 20 C 0.18 1.72 11.16 -17.53 -0.20 1.53 16 21 N -0.55 -7.08 9.20 -13.02 -0.12 -7.20 16 22 C 0.38 6.05 7.51 -16.62 -0.12 5.92 16 23 O -0.29 -4.71 9.93 -17.98 -0.18 -4.89 16 24 C 0.04 0.45 10.38 101.05 1.05 1.50 16 25 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 7.70 8.52 -40.82 -0.35 7.36 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.06 0.64 8.11 -51.93 -0.42 0.21 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -32.15 313.29 -5.38 -37.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.25 Total: 4.90 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.99 Total: 4.06 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.23 Total: -47.02 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.10 Total: -18.18 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.15 -5.38 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185579506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.574 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds