Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21612 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47373 * 120.00205 * 179.97438 * 14 13 3 17 17 C 1.40307 * 120.62581 * 270.00194 * 16 14 13 18 18 F 1.35095 * 120.85845 * 359.97438 * 17 16 14 19 19 C 1.38740 * 118.27928 * 179.97438 * 17 16 14 20 20 C 1.38146 * 119.42389 * 359.97438 * 19 17 16 21 21 N 1.31967 * 121.23851 * 0.02562 * 20 19 17 22 22 C 1.32216 * 121.88344 * 359.68041 * 21 20 19 23 23 O 1.35428 * 119.78709 * 180.29352 * 22 21 20 24 24 C 1.42897 * 117.00213 * 0.28776 * 23 22 21 25 25 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.07999 * 120.28409 * 180.02562 * 19 17 16 33 33 H 1.08005 * 119.38305 * 179.97438 * 20 19 17 34 34 H 1.08999 * 109.47058 * 180.02562 * 24 23 22 35 35 H 1.09004 * 109.46987 * 300.00282 * 24 23 22 36 36 H 1.08996 * 109.47437 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5988 1.5453 -0.1939 11 1 6.4962 -0.5189 -1.4629 12 1 6.3999 1.6158 -2.6094 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6326 0.4316 16 6 0.0451 3.3227 2.6265 17 6 -0.5919 2.5974 3.6447 18 9 -0.8621 1.2824 3.4938 19 6 -0.9373 3.2658 4.8104 20 6 -0.6465 4.6107 4.9333 21 7 -0.0464 5.2726 3.9620 22 6 0.3099 4.6847 2.8326 23 8 0.9289 5.4036 1.8661 24 6 1.1689 6.7857 2.1387 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -1.4284 2.7389 5.6152 33 1 -0.9160 5.1304 5.8409 34 1 1.6687 7.2429 1.2848 35 1 0.2196 7.2910 2.3170 36 1 1.8008 6.8774 3.0220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185579506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -107.610241 kcal Electronic energy + Delta-G solvation = -22623.544721 eV Core-core repulsion = 19021.917782 eV Total energy + Delta-G solvation = -3601.626939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.30548 -41.91804 -40.39329 -38.96200 -36.99582 -34.41520 -33.57534 -32.64551 -31.90794 -29.03921 -28.30046 -26.01050 -24.81261 -24.10611 -22.42733 -21.31583 -19.97221 -19.40507 -18.97918 -17.83611 -17.59449 -17.33475 -17.10054 -16.66655 -16.34354 -16.08263 -15.93440 -15.56937 -15.01169 -14.65312 -14.62676 -14.24487 -13.96375 -13.50888 -13.35222 -13.21021 -12.92848 -12.74640 -12.70879 -12.26203 -12.20223 -12.11586 -11.64101 -11.38344 -11.10074 -10.84747 -10.68519 -10.55468 -9.78661 -9.74002 -8.18091 -6.35824 -0.35814 -0.08613 1.43087 1.43751 1.54328 1.56703 1.80219 2.26560 2.41757 2.52173 2.84731 3.11096 3.28315 3.69018 3.77541 3.85073 4.30242 4.40338 4.41965 4.44337 4.52124 4.61839 4.70924 4.71087 4.78364 5.01518 5.20021 5.27005 5.38447 5.47880 5.56235 5.72977 5.84970 6.04528 6.11595 6.56630 6.69691 6.81463 7.26116 7.41981 8.87957 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.005594 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.337862 B = 5004.005680 C = 5822.980532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.282 1.282 13 N -0.690 5.690 14 C 0.565 3.435 15 O -0.577 6.577 16 C -0.264 4.264 17 C 0.193 3.807 18 F -0.124 7.124 19 C -0.226 4.226 20 C 0.195 3.805 21 N -0.545 5.545 22 C 0.371 3.629 23 O -0.323 6.323 24 C 0.035 3.965 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.400 0.600 32 H 0.197 0.803 33 H 0.230 0.770 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 9.185 17.740 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.349 3.651 15 O -0.458 6.458 16 C -0.271 4.271 17 C 0.166 3.834 18 F -0.102 7.102 19 C -0.246 4.246 20 C 0.039 3.961 21 N -0.270 5.270 22 C 0.192 3.808 23 O -0.229 6.229 24 C -0.059 4.059 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.234 0.766 32 H 0.214 0.786 33 H 0.246 0.754 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.892 9.829 16.672 20.231 hybrid contribution 0.840 -1.136 -0.606 1.538 sum -5.052 8.692 16.066 18.953 Atomic orbital electron populations 1.21695 0.97146 0.99334 1.00070 1.21783 0.93622 0.98931 1.01513 1.18478 0.94056 0.89206 0.80752 0.98277 1.21535 0.91023 1.39157 1.06860 0.91287 1.25776 1.03519 0.94205 0.94834 1.70057 1.37086 1.38240 1.09860 0.85286 0.78810 0.77955 0.78212 1.18614 1.20187 1.20799 1.46269 1.14660 1.54965 1.17767 1.17962 0.82335 0.77973 0.86795 1.90746 1.52716 1.61031 1.41322 1.19958 1.14159 0.94744 0.98263 1.18006 0.93915 0.77937 0.93571 1.91570 1.90803 1.31985 1.95877 1.22405 1.07412 0.97194 0.97588 1.23419 0.86549 0.90035 0.96122 1.67587 1.18559 1.39569 1.01287 1.19462 0.88021 0.86380 0.86941 1.86301 1.71479 1.26471 1.38608 1.23220 1.02656 0.75980 1.04006 0.94273 0.95496 0.93190 0.90486 0.94016 0.92459 0.76614 0.78608 0.75408 0.86924 0.91070 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 8.51 71.98 0.61 -5.43 16 2 C -0.12 -6.20 5.45 30.59 0.17 -6.04 16 3 C 0.28 15.10 2.24 44.25 0.10 15.19 16 4 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 5 C -0.55 -30.06 8.73 25.60 0.22 -29.84 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.93 5.29 84.65 0.45 1.37 16 8 N -0.91 -53.20 11.30 21.45 0.24 -52.96 16 9 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.69 -31.82 5.02 -449.42 -2.26 -34.08 16 14 C 0.56 25.65 5.09 86.65 0.44 26.10 16 15 O -0.58 -30.91 14.24 -4.07 -0.06 -30.97 16 16 C -0.26 -9.32 5.66 -19.87 -0.11 -9.43 16 17 C 0.19 5.45 7.37 22.89 0.17 5.62 16 18 F -0.12 -3.92 16.93 44.97 0.76 -3.16 16 19 C -0.23 -3.76 10.08 22.37 0.23 -3.53 16 20 C 0.19 2.82 11.16 84.65 0.94 3.77 16 21 N -0.54 -12.45 9.20 -308.13 -2.84 -15.29 16 22 C 0.37 11.59 7.51 85.13 0.64 12.23 16 23 O -0.32 -10.80 9.93 -87.23 -0.87 -11.66 16 24 C 0.04 0.78 10.38 113.37 1.18 1.95 16 25 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 26 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 27 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.08 4.38 5.95 -2.39 -0.01 4.37 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.40 16.35 8.52 -92.71 -0.79 15.56 16 32 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.38 8.10 -2.38 -0.02 1.37 16 36 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 Total: -1.00 -75.01 313.29 2.38 -72.63 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.33 Total: 18.69 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.03 Total: 11.96 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -4.85 Total: -102.33 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.92 Total: -42.63 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.76 Total: -3.16 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.01 2.38 -72.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185579506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.979 kcal (2) G-P(sol) polarization free energy of solvation -75.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds