Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21612 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47382 * 120.00185 * 180.02562 * 14 13 3 17 17 C 1.39908 * 120.63747 * 89.72180 * 16 14 13 18 18 F 1.35098 * 119.73397 * 359.97438 * 17 16 14 19 19 N 1.31895 * 120.53299 * 179.77723 * 17 16 14 20 20 C 1.32116 * 122.01643 * 0.48717 * 19 17 16 21 21 C 1.37891 * 121.23881 * 359.77876 * 20 19 17 22 22 C 1.39220 * 119.31160 * 359.96717 * 21 20 19 23 23 O 1.35508 * 120.91514 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00099 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.07996 * 119.38270 * 179.74870 * 20 19 17 33 33 H 1.08003 * 120.34788 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47170 * 59.99237 * 24 23 22 35 35 H 1.09002 * 109.47152 * 179.97438 * 24 23 22 36 36 H 1.09004 * 109.46989 * 299.99685 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1454 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6326 0.4316 16 6 0.0455 3.3237 2.6262 17 6 0.3086 4.6826 2.8305 18 9 0.9262 5.3981 1.8652 19 7 -0.0449 5.2717 3.9564 20 6 -0.6459 4.6142 4.9322 21 6 -0.9378 3.2716 4.8161 22 6 -0.5927 2.5977 3.6477 23 8 -0.8647 1.2785 3.4988 24 6 -1.5151 0.6230 4.5892 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -0.9131 5.1381 5.8380 33 1 -1.4291 2.7482 5.6230 34 1 -2.4764 1.1007 4.7791 35 1 -1.6740 -0.4261 4.3399 36 1 -0.8915 0.6947 5.4804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197151340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -78.927826 kcal Electronic energy + Delta-G solvation = -22652.390161 eV Core-core repulsion = 19052.006984 eV Total energy + Delta-G solvation = -3600.383177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.99344 -40.86144 -38.71972 -38.34343 -35.03454 -32.56630 -31.94350 -31.26265 -30.52631 -27.82233 -27.00054 -24.70174 -23.07003 -22.88820 -20.76882 -19.41066 -18.90557 -17.95259 -17.69797 -16.45843 -16.43273 -15.87152 -15.71143 -15.33270 -15.13337 -14.74371 -14.30443 -14.14863 -13.47715 -13.20588 -13.16012 -12.97904 -12.65371 -11.98152 -11.84156 -11.67077 -11.46550 -11.22370 -10.98508 -10.79446 -10.33884 -10.19107 -10.11611 -9.59916 -9.25367 -9.20990 -9.07421 -8.94111 -8.47395 -7.83740 -6.09745 -4.19118 0.62507 0.97689 2.69699 3.15003 3.28048 3.32626 3.33185 3.35274 3.51986 3.96620 4.33122 4.39959 4.60672 4.70077 4.83329 4.86683 5.12663 5.21730 5.24747 5.41022 5.49840 5.68815 6.25329 6.43086 6.52848 6.70733 6.88075 7.10230 7.22403 7.37887 7.44472 7.46712 7.63902 7.74201 7.91808 8.19594 8.62734 8.77370 9.06703 9.47502 10.95603 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.005453 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.496004 B = 5133.589159 C = 5825.529953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.562 3.438 15 O -0.531 6.531 16 C -0.226 4.226 17 C 0.375 3.625 18 F -0.093 7.093 19 N -0.537 5.537 20 C 0.177 3.823 21 C -0.278 4.278 22 C 0.225 3.775 23 O -0.289 6.289 24 C 0.024 3.976 25 H 0.022 0.978 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 2.155 16.650 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.338 5.338 14 C 0.344 3.656 15 O -0.409 6.409 16 C -0.234 4.234 17 C 0.221 3.779 18 F -0.072 7.072 19 N -0.255 5.255 20 C 0.022 3.978 21 C -0.300 4.300 22 C 0.170 3.830 23 O -0.199 6.199 24 C -0.071 4.071 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.189 0.811 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.774 2.717 15.620 18.120 hybrid contribution 1.081 -0.736 0.293 1.341 sum -7.693 1.981 15.913 17.786 Atomic orbital electron populations 1.21865 0.98282 0.98056 1.01494 1.21913 0.92702 0.99561 1.02248 1.18866 0.94338 0.89285 0.80625 0.93106 1.21179 0.90571 1.39130 1.06378 0.92108 1.24869 0.98602 0.94777 0.95323 1.69891 1.35201 1.37538 1.09317 0.86510 0.84846 0.78355 0.77405 1.20203 1.21119 1.20131 1.46478 1.13817 1.54836 1.18651 1.17382 0.83394 0.79364 0.85486 1.90794 1.51487 1.59565 1.39012 1.20299 1.10314 0.93907 0.98890 1.17761 0.90400 0.84828 0.84875 1.91706 1.78526 1.77933 1.59014 1.67099 1.16971 1.40335 1.01100 1.22326 0.89727 0.90403 0.95380 1.22161 1.10901 0.97569 0.99329 1.18975 0.89098 0.83834 0.91090 1.86184 1.73023 1.18319 1.42331 1.23256 0.96623 0.98417 0.88811 0.95936 0.93682 0.93307 0.88261 0.95020 0.92504 0.77916 0.81095 0.83160 0.92035 0.87371 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.96 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.88 11.30 55.43 0.63 -24.25 16 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.69 -15.19 5.02 -56.02 -0.28 -15.48 16 14 C 0.56 12.11 5.10 -12.54 -0.06 12.04 16 15 O -0.53 -13.27 14.24 5.27 0.08 -13.19 16 16 C -0.23 -3.95 5.66 -104.64 -0.59 -4.54 16 17 C 0.37 6.31 8.42 -16.90 -0.14 6.17 16 18 F -0.09 -1.73 16.86 2.25 0.04 -1.69 16 19 N -0.54 -7.67 10.35 -13.29 -0.14 -7.81 16 20 C 0.18 1.80 11.15 -17.56 -0.20 1.60 16 21 C -0.28 -2.74 9.10 -39.34 -0.36 -3.10 16 22 C 0.23 3.16 6.74 -38.31 -0.26 2.90 16 23 O -0.29 -4.01 10.03 -18.22 -0.18 -4.19 16 24 C 0.02 0.19 9.84 101.05 0.99 1.18 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 1.01 5.64 -51.93 -0.29 0.72 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.39 7.65 8.52 -40.82 -0.35 7.30 16 32 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.15 0.90 6.46 -52.48 -0.34 0.56 16 34 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.37 7.71 -51.93 -0.40 -0.04 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -32.77 310.82 -5.32 -38.09 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.12 Total: 3.98 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.00 Total: 4.05 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.21 Total: -47.54 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.11 Total: -17.38 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.77 -5.32 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197151340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.840 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds