Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 H 1.07999 * 119.99515 * 240.00498 * 5 3 2 7 7 C 1.37870 * 120.00176 * 59.99965 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46496 * 109.47194 * 65.00415 * 3 2 1 14 14 C 1.34778 * 119.99951 * 274.99836 * 13 3 2 15 15 O 1.21612 * 119.99719 * 359.97438 * 14 13 3 16 16 C 1.47382 * 120.00185 * 180.02562 * 14 13 3 17 17 C 1.39908 * 120.63747 * 89.72180 * 16 14 13 18 18 F 1.35098 * 119.73397 * 359.97438 * 17 16 14 19 19 N 1.31895 * 120.53299 * 179.77723 * 17 16 14 20 20 C 1.32116 * 122.01643 * 0.48717 * 19 17 16 21 21 C 1.37891 * 121.23881 * 359.77876 * 20 19 17 22 22 C 1.39220 * 119.31160 * 359.96717 * 21 20 19 23 23 O 1.35508 * 120.91514 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00099 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 28 28 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 29 29 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00444 * 95.00053 * 13 3 2 32 32 H 1.07996 * 119.38270 * 179.74870 * 20 19 17 33 33 H 1.08003 * 120.34788 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.47170 * 59.99237 * 24 23 22 35 35 H 1.09002 * 109.47152 * 179.97438 * 24 23 22 36 36 H 1.09004 * 109.46989 * 299.99685 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3813 10 1 6.5967 0.1454 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6326 0.4316 16 6 0.0455 3.3237 2.6262 17 6 0.3086 4.6826 2.8305 18 9 0.9262 5.3981 1.8652 19 7 -0.0449 5.2717 3.9564 20 6 -0.6459 4.6142 4.9322 21 6 -0.9378 3.2716 4.8161 22 6 -0.5927 2.5977 3.6477 23 8 -0.8647 1.2785 3.4988 24 6 -1.5151 0.6230 4.5892 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0609 -2.9501 31 1 2.2720 2.1231 1.9977 32 1 -0.9131 5.1381 5.8380 33 1 -1.4291 2.7482 5.6230 34 1 -2.4764 1.1007 4.7791 35 1 -1.6740 -0.4261 4.3399 36 1 -0.8915 0.6947 5.4804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197151340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -103.590889 kcal Electronic energy + Delta-G solvation = -22653.459632 eV Core-core repulsion = 19052.006984 eV Total energy + Delta-G solvation = -3601.452647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.29787 -41.93700 -40.37070 -39.31799 -36.98764 -34.40658 -33.46324 -32.47848 -31.99023 -29.01424 -28.48396 -26.02125 -24.81028 -24.03998 -22.43700 -21.31693 -20.00182 -19.38164 -18.95284 -17.84634 -17.64989 -17.46896 -17.12857 -16.68238 -16.35510 -16.03928 -15.97724 -15.46840 -14.99393 -14.62539 -14.53873 -14.15354 -14.08323 -13.63077 -13.46023 -13.18915 -12.95906 -12.67023 -12.56704 -12.49025 -12.20647 -12.10162 -11.60187 -11.35461 -11.10863 -10.73011 -10.54286 -10.26376 -10.10508 -9.74630 -8.17654 -6.35662 -0.42158 -0.02790 1.43386 1.46020 1.52557 1.54430 1.81283 2.24120 2.38463 2.45012 2.60526 3.11262 3.49776 3.59016 3.77135 3.84269 4.30285 4.33661 4.40489 4.47605 4.52031 4.57049 4.73426 4.76046 4.79749 5.04659 5.23578 5.28746 5.42116 5.49602 5.56491 5.75100 5.85770 6.05166 6.13003 6.48943 6.69377 6.81543 7.26107 7.42018 8.87769 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.005453 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.496004 B = 5133.589159 C = 5825.529953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.552 4.552 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.565 3.435 15 O -0.576 6.576 16 C -0.258 4.258 17 C 0.355 3.645 18 F -0.117 7.117 19 N -0.549 5.549 20 C 0.188 3.812 21 C -0.250 4.250 22 C 0.222 3.778 23 O -0.323 6.323 24 C 0.010 3.990 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.400 0.600 32 H 0.226 0.774 33 H 0.202 0.798 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 1.891 20.453 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.155 4.155 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.590 4.590 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.336 5.336 14 C 0.349 3.651 15 O -0.457 6.457 16 C -0.267 4.267 17 C 0.202 3.798 18 F -0.096 7.096 19 N -0.268 5.268 20 C 0.034 3.966 21 C -0.270 4.270 22 C 0.167 3.833 23 O -0.233 6.233 24 C -0.083 4.083 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.243 0.757 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.066 2.452 19.478 21.624 hybrid contribution 1.047 -0.675 -0.761 1.460 sum -8.019 1.777 18.717 20.440 Atomic orbital electron populations 1.21692 0.96944 0.99274 1.00293 1.21739 0.93787 0.98612 1.01381 1.18483 0.93929 0.89442 0.80679 0.98430 1.21498 0.91148 1.39386 1.06965 0.91334 1.25760 1.03473 0.94182 0.94810 1.70043 1.37197 1.38086 1.09790 0.85409 0.78855 0.78413 0.77730 1.18782 1.20830 1.19873 1.46269 1.14638 1.54970 1.17750 1.17949 0.82302 0.78238 0.86591 1.90751 1.52585 1.61122 1.41256 1.19995 1.13858 0.94511 0.98296 1.17888 0.91655 0.84611 0.85668 1.91632 1.79292 1.78413 1.60289 1.67225 1.17845 1.40815 1.00878 1.23349 0.86959 0.90853 0.95479 1.22661 1.08619 0.97256 0.98452 1.19142 0.88589 0.84261 0.91350 1.86146 1.73521 1.18350 1.45295 1.23679 0.97860 0.98534 0.88235 0.93288 0.93461 0.95916 0.90720 0.93968 0.92443 0.76577 0.75729 0.78093 0.89693 0.86726 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.51 71.98 0.61 -5.27 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 15.04 2.24 44.25 0.10 15.14 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -30.41 8.73 25.60 0.22 -30.19 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -53.21 11.30 21.45 0.24 -52.97 16 9 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.69 -31.65 5.02 -449.41 -2.26 -33.90 16 14 C 0.56 25.50 5.10 86.65 0.44 25.95 16 15 O -0.58 -30.68 14.24 -4.07 -0.06 -30.74 16 16 C -0.26 -9.11 5.66 -19.88 -0.11 -9.22 16 17 C 0.36 12.08 8.42 85.09 0.72 12.80 16 18 F -0.12 -4.59 16.86 44.97 0.76 -3.84 16 19 N -0.55 -14.61 10.35 -195.97 -2.03 -16.63 16 20 C 0.19 2.93 11.15 84.57 0.94 3.88 16 21 C -0.25 -3.70 9.10 22.42 0.20 -3.50 16 22 C 0.22 5.77 6.74 23.09 0.16 5.92 16 23 O -0.32 -8.33 10.03 -88.10 -0.88 -9.22 16 24 C 0.01 0.12 9.84 113.37 1.12 1.23 16 25 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.05 2.19 5.64 -2.39 -0.01 2.18 16 27 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 28 H 0.07 4.21 5.95 -2.39 -0.01 4.20 16 29 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.40 16.25 8.52 -92.71 -0.79 15.46 16 32 H 0.23 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.20 0.91 6.46 -2.91 -0.02 0.89 16 34 H 0.08 0.62 7.71 -2.39 -0.02 0.60 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 0.59 7.71 -2.39 -0.02 0.57 16 Total: -1.00 -77.67 310.82 3.15 -74.52 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.34 Total: 15.33 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.01 Total: 12.40 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -4.04 Total: -103.50 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.94 Total: -39.96 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.76 Total: -3.84 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.67 3.15 -74.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197151340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.073 kcal (2) G-P(sol) polarization free energy of solvation -77.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds