Wall clock time and date at job start Tue Mar 31 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47025 * 2 1 4 4 N 1.46499 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.46505 * 120.00230 * 269.99853 * 4 3 2 6 6 C 1.50693 * 109.47160 * 270.00512 * 5 4 3 7 7 H 1.08005 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99887 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00076 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99799 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46944 * 90.00284 * 10 8 6 12 12 H 1.48503 * 109.46748 * 210.00102 * 10 8 6 13 13 H 1.48497 * 109.47289 * 329.99984 * 10 8 6 14 14 C 1.34781 * 120.00259 * 90.00100 * 4 3 2 15 15 S 1.71202 * 120.00073 * 179.97438 * 14 4 3 16 16 N 1.34771 * 119.99489 * 0.02562 * 14 4 3 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 16 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 16 23 23 H 1.08996 * 109.46833 * 299.99745 * 1 2 3 24 24 H 1.08999 * 109.47231 * 60.00423 * 1 2 3 25 25 H 1.08997 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47177 * 240.00005 * 2 1 3 27 27 H 1.09004 * 109.47601 * 119.99874 * 2 1 3 28 28 H 1.09002 * 109.47139 * 59.99982 * 3 2 1 29 29 H 1.09001 * 109.47263 * 299.99719 * 3 2 1 30 30 H 1.09002 * 109.46764 * 30.00200 * 5 4 3 31 31 H 1.08993 * 109.47395 * 149.99993 * 5 4 3 32 32 H 0.97002 * 120.00054 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00772 * 359.97438 * 16 14 4 34 34 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 35 35 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 36 36 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 37 37 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 38 38 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.4424 1.2678 6 6 4.4893 2.8631 1.7030 7 1 4.1384 3.6841 1.0953 8 6 5.1672 3.1149 2.8769 9 7 5.5949 2.1152 3.6167 10 14 5.4792 4.8760 3.4160 11 1 4.3494 5.3432 4.2589 12 1 6.7396 4.9380 4.1989 13 1 5.5968 5.7467 2.2188 14 6 4.1784 1.4427 -1.1681 15 16 5.8904 1.4434 -1.1688 16 7 3.5040 1.4434 -2.3349 17 6 4.2360 1.4431 -3.6040 18 6 3.2563 1.4434 -4.7491 19 6 2.7452 2.5347 -5.3468 20 6 1.8762 2.0758 -6.3632 21 6 1.9085 0.7316 -6.3261 22 8 2.7497 0.3541 -5.3495 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.6493 0.9284 2.0276 31 1 5.1904 0.9286 1.1370 32 1 6.0721 2.2923 4.4424 33 1 2.5341 1.4434 -2.3346 34 1 4.8633 2.3326 -3.6619 35 1 4.8620 0.5527 -3.6622 36 1 2.9586 3.5639 -5.0987 37 1 1.2973 2.6873 -7.0396 38 1 1.3550 0.0683 -6.9743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200563071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:19 Heat of formation + Delta-G solvation = 31.906101 kcal Electronic energy + Delta-G solvation = -19846.760878 eV Core-core repulsion = 16817.396997 eV Total energy + Delta-G solvation = -3029.363881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.79178 -39.04449 -35.85129 -33.61183 -33.21423 -32.41421 -30.60551 -27.72112 -26.88092 -25.41364 -23.01417 -22.32002 -21.97170 -20.97750 -20.36378 -18.14179 -17.24514 -16.85935 -16.41925 -15.94420 -15.05165 -14.77565 -14.59002 -14.57723 -14.14408 -13.62941 -13.56080 -13.05087 -12.88815 -12.72394 -12.35180 -12.07903 -11.94838 -11.62653 -11.30909 -11.04499 -10.81129 -10.70973 -10.65773 -10.22079 -10.16890 -10.08547 -9.63299 -8.84061 -8.42277 -8.22691 -6.93974 -6.42644 -6.02388 -4.05745 1.37071 2.19588 2.31354 2.68033 2.83997 3.32542 3.40657 3.43410 3.50244 3.84948 4.40452 4.47596 4.79629 4.83168 4.87821 4.97657 5.21997 5.32888 5.33665 5.36045 5.51986 5.61316 5.64807 5.74450 5.76399 5.88153 5.95667 6.08102 6.24606 6.26576 6.38886 6.63593 6.90620 7.18331 7.49528 7.58255 7.92912 8.00428 8.18286 8.92636 9.56787 11.06261 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.004669 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.584082 B = 5995.145442 C = 6669.459701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.094 3.906 4 N -0.538 5.538 5 C 0.238 3.762 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.283 1.283 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.562 3.438 15 S -0.655 6.655 16 N -0.705 5.705 17 C 0.214 3.786 18 C -0.033 4.033 19 C -0.186 4.186 20 C -0.218 4.218 21 C -0.034 4.034 22 O -0.171 6.171 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.264 0.736 33 H 0.392 0.608 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -2.994 -16.171 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.033 4.033 4 N -0.243 5.243 5 C 0.120 3.880 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.135 4.135 9 N -0.529 5.529 10 Si 0.726 3.274 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.203 3.797 15 S -0.526 6.526 16 N -0.342 5.342 17 C 0.090 3.910 18 C -0.083 4.083 19 C -0.206 4.206 20 C -0.237 4.237 21 C -0.102 4.102 22 O -0.066 6.066 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.925 -3.332 -15.840 20.105 hybrid contribution -1.363 1.232 0.149 1.844 sum -13.288 -2.100 -15.690 20.668 Atomic orbital electron populations 1.21690 0.95032 1.01877 1.01924 1.21962 0.96120 0.96905 1.03153 1.21835 0.80963 0.97030 1.03473 1.47840 1.05568 1.64310 1.06570 1.19942 0.93825 0.99070 0.75185 1.21129 1.37142 0.91234 1.06178 0.92629 1.24818 0.95073 0.97322 0.96297 1.69916 1.38071 1.30662 1.14291 0.86488 0.77619 0.84721 0.78546 1.20900 1.21014 1.19843 1.22089 0.95257 0.81315 0.81019 1.93182 0.90077 1.74804 1.94524 1.44949 1.09101 1.76220 1.03918 1.19781 0.89464 1.06320 0.75402 1.22530 1.01879 0.84374 0.99558 1.21765 1.00497 0.99775 0.98551 1.21877 1.04288 0.94857 1.02689 1.24117 0.96286 0.96188 0.93656 1.84070 1.47837 1.35029 1.39695 0.92177 0.92923 0.92448 0.92162 0.90612 0.88375 0.91870 0.94559 0.90348 0.92680 0.77047 0.86927 0.88383 0.83066 0.83302 0.78017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.09 16 2 C -0.14 -1.82 6.26 -26.73 -0.17 -1.98 16 3 C 0.09 1.40 5.17 -4.04 -0.02 1.38 16 4 N -0.54 -10.74 2.46 -177.09 -0.43 -11.18 16 5 C 0.24 5.96 4.92 -5.19 -0.03 5.93 16 6 C -0.52 -14.24 9.39 -34.44 -0.32 -14.57 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.56 11.17 7.70 -86.92 -0.67 10.50 16 15 S -0.65 -16.03 27.17 -107.50 -2.92 -18.95 16 16 N -0.71 -10.61 5.41 -63.21 -0.34 -10.95 16 17 C 0.21 2.91 5.66 -5.19 -0.03 2.88 16 18 C -0.03 -0.39 6.69 -35.62 -0.24 -0.62 16 19 C -0.19 -1.95 10.81 -39.70 -0.43 -2.38 16 20 C -0.22 -1.94 10.91 -39.71 -0.43 -2.37 16 21 C -0.03 -0.29 12.09 29.41 0.36 0.06 16 22 O -0.17 -1.96 10.65 5.68 0.06 -1.90 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 29 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.08 2.24 6.58 -51.93 -0.34 1.90 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.39 5.04 6.19 -40.82 -0.25 4.79 16 34 H 0.11 1.58 7.99 -51.93 -0.41 1.17 16 35 H 0.10 1.42 7.99 -51.93 -0.42 1.00 16 36 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -33.43 337.06 -10.07 -43.50 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.52 Total: 3.37 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.71 Total: -0.46 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.04 Total: -47.53 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: 0.06 Total: -1.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -16.03 SS G_CDS: -2.92 Total: -18.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.43 -10.07 -43.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200563071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.410 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds