Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47277 * 103.86555 * 3 2 1 5 5 C 1.46899 * 110.99902 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.50025 * 325.00250 * 5 4 3 7 7 C 1.53041 * 109.52125 * 204.91851 * 5 4 3 8 8 C 1.53045 * 109.53408 * 178.67079 * 7 5 4 9 9 C 1.53186 * 109.31590 * 61.36576 * 8 7 5 10 10 N 1.46930 * 108.77576 * 305.36535 * 9 8 7 11 11 C 1.34771 * 120.63086 * 233.58470 * 10 9 8 12 12 O 1.21277 * 120.00314 * 180.02562 * 11 10 9 13 13 C 1.50704 * 120.00049 * 0.02562 * 11 10 9 14 14 S 1.80998 * 109.47263 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99921 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00331 * 180.02562 * 15 14 13 18 18 N 1.31638 * 119.99704 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46996 * 60.00218 * 19 17 15 21 21 H 1.48501 * 109.46864 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47132 * 299.99784 * 19 17 15 23 23 C 1.46929 * 118.73732 * 53.60420 * 10 9 8 24 24 H 4.40886 * 5.52279 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47396 * 343.86334 * 3 2 1 26 26 H 1.09006 * 109.46862 * 223.86694 * 3 2 1 27 27 H 1.00899 * 111.00150 * 303.94916 * 4 3 2 28 28 H 1.08997 * 109.46292 * 298.69028 * 7 5 4 29 29 H 1.09001 * 109.46229 * 58.65507 * 7 5 4 30 30 H 1.09000 * 109.49953 * 301.41284 * 8 7 5 31 31 H 1.09000 * 109.52299 * 181.33370 * 8 7 5 32 32 H 1.08992 * 109.58914 * 185.57513 * 9 8 7 33 33 H 1.09008 * 109.58493 * 65.15247 * 9 8 7 34 34 H 1.08995 * 109.47111 * 300.00307 * 13 11 10 35 35 H 1.09002 * 109.47121 * 59.99900 * 13 11 10 36 36 H 0.97005 * 119.99914 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.58283 * 186.60223 * 23 10 9 38 38 H 1.09002 * 109.70060 * 66.24994 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.3328 -1.3446 5 6 4.6040 0.3434 -1.3825 6 1 4.9898 0.7167 -0.4338 7 6 5.0797 1.2503 -2.5197 8 6 6.6096 1.2878 -2.5386 9 6 7.1480 -0.1243 -2.7889 10 7 6.5790 -1.0325 -1.7837 11 6 7.3804 -1.8079 -1.0268 12 8 6.8985 -2.5537 -0.2008 13 6 8.8754 -1.7482 -1.2069 14 16 9.6683 -2.8965 -0.0542 15 6 11.3594 -2.6279 -0.4694 16 1 11.6200 -1.9182 -1.2407 17 6 12.3568 -3.3291 0.1939 18 7 12.0392 -4.1945 1.1336 19 14 14.1497 -3.0449 -0.2469 20 1 14.4969 -1.6201 -0.0133 21 1 15.0106 -3.9089 0.6002 22 1 14.3668 -3.3793 -1.6773 23 6 5.1196 -1.0795 -1.6197 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9864 0.2856 26 1 3.0090 0.7418 0.7122 27 1 2.7604 -0.3023 -2.0331 28 1 4.7143 0.8625 -3.4706 29 1 4.6937 2.2581 -2.3663 30 1 6.9765 1.6522 -1.5790 31 1 6.9480 1.9523 -3.3335 32 1 8.2347 -0.1213 -2.7050 33 1 6.8573 -0.4548 -3.7861 34 1 9.1295 -2.0262 -2.2297 35 1 9.2251 -0.7351 -1.0082 36 1 12.7363 -4.6843 1.5975 37 1 4.8681 -1.7066 -0.7644 38 1 4.6616 -1.4887 -2.5202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = 18.136155 kcal Electronic energy + Delta-G solvation = -19364.155882 eV Core-core repulsion = 16334.194891 eV Total energy + Delta-G solvation = -3029.960990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10625 -37.89608 -35.93045 -33.34302 -32.44518 -32.19214 -30.42363 -28.72779 -25.72428 -25.57390 -25.00038 -22.61338 -21.03258 -19.19673 -18.44795 -17.70710 -16.78829 -16.31379 -15.61131 -15.24001 -14.96017 -14.81730 -14.74806 -14.40436 -13.90023 -13.75054 -13.25743 -13.19500 -12.92663 -12.80603 -12.52510 -11.94082 -11.57581 -11.18859 -11.11492 -11.05714 -11.05017 -10.90432 -10.77832 -10.67244 -10.52502 -9.83473 -9.44212 -9.07559 -9.00609 -8.39809 -8.24955 -6.52235 -6.22922 -3.93962 2.44261 2.60672 2.89019 3.00497 3.22397 3.24251 3.27997 3.55556 3.89549 4.18822 4.23870 4.54421 4.61593 4.81070 4.83543 4.97972 5.06666 5.12114 5.19858 5.22708 5.34367 5.43850 5.56582 5.57895 5.64772 5.69204 5.70091 5.82692 5.85231 5.98213 6.07353 6.09367 6.43986 6.69846 6.97235 7.36842 7.50907 7.57794 8.33429 8.51232 9.22148 10.84451 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.003293 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.790800 B = 8500.298994 C = 9188.480631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.161 3.839 4 N -0.676 5.676 5 C 0.073 3.927 6 H 0.086 0.914 7 C -0.104 4.104 8 C -0.135 4.135 9 C 0.106 3.894 10 N -0.617 5.617 11 C 0.535 3.465 12 O -0.518 6.518 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.086 3.914 24 H 0.217 0.783 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.345 0.655 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.090 0.910 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.556 11.608 -8.305 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.183 4.183 3 C 0.033 3.967 4 N -0.306 5.306 5 C -0.037 4.037 6 H 0.104 0.896 7 C -0.142 4.142 8 C -0.174 4.174 9 C -0.017 4.017 10 N -0.353 5.353 11 C 0.323 3.677 12 O -0.392 6.392 13 C -0.300 4.300 14 S 0.165 5.835 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.040 4.040 24 H 0.234 0.766 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.164 0.836 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.234 11.034 -6.830 21.573 hybrid contribution 1.676 0.101 -1.253 2.095 sum -15.557 11.134 -8.083 20.769 Atomic orbital electron populations 1.24907 0.95912 1.01523 0.99293 1.22920 0.94247 0.99997 1.01149 1.18951 0.84588 1.01116 0.92007 1.60645 1.07293 1.57267 1.05412 1.22013 0.86307 0.94825 1.00592 0.89567 1.21469 0.94729 1.00134 0.97915 1.21942 0.95719 0.96713 1.03053 1.21767 0.99591 0.88938 0.91423 1.48027 1.05676 1.42597 1.39019 1.20381 0.88699 0.78898 0.79739 1.90686 1.76220 1.38211 1.34122 1.23550 0.93622 1.06411 1.06451 1.85407 1.01879 1.50253 1.45955 1.22812 0.91270 1.28948 1.25340 0.90975 1.24996 0.99570 0.94472 0.94540 1.70013 1.33889 1.24023 1.22375 0.86221 0.82374 0.78367 0.78530 1.19920 1.20806 1.19922 1.22265 0.81267 0.97804 1.02614 0.76592 0.92082 0.88483 0.83644 0.91743 0.90889 0.91162 0.90303 0.89067 0.91477 0.89235 0.89187 0.92113 0.89129 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.18 -1.84 13.60 -37.12 -0.50 -2.34 16 3 C 0.16 1.52 5.96 -6.61 -0.04 1.48 16 4 N -0.68 -6.11 6.22 -109.68 -0.68 -6.79 16 5 C 0.07 0.71 2.62 -67.60 -0.18 0.53 16 6 H 0.09 0.94 7.80 -51.93 -0.41 0.53 16 7 C -0.10 -0.87 5.49 -26.69 -0.15 -1.02 16 8 C -0.14 -1.15 6.08 -26.61 -0.16 -1.32 16 9 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 10 N -0.62 -8.53 2.97 -172.77 -0.51 -9.05 16 11 C 0.53 10.08 7.72 -10.99 -0.08 10.00 16 12 O -0.52 -11.76 15.27 5.56 0.08 -11.68 16 13 C -0.15 -3.01 4.50 36.01 0.16 -2.85 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 16 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 19 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.09 1.01 5.69 -3.71 -0.02 0.98 16 24 H 0.22 1.12 7.80 -54.09 -0.42 0.70 16 25 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 26 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 27 H 0.35 2.86 8.39 -39.29 -0.33 2.53 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.98 5.93 -51.93 -0.31 0.68 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.09 1.67 7.94 -51.92 -0.41 1.25 16 35 H 0.09 1.67 7.69 -51.91 -0.40 1.27 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.26 6.48 -51.93 -0.34 0.92 16 38 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -33.95 333.92 -8.31 -42.26 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.50 Total: 0.70 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.23 Total: -7.46 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.46 Total: -41.22 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.95 -8.31 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.399 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds