Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46902 * 109.47277 * 103.86555 * 3 2 1 5 5 C 1.46899 * 110.99902 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.50025 * 325.00250 * 5 4 3 7 7 C 1.53041 * 109.52125 * 204.91851 * 5 4 3 8 8 C 1.53045 * 109.53408 * 178.67079 * 7 5 4 9 9 C 1.53186 * 109.31590 * 61.36576 * 8 7 5 10 10 N 1.46930 * 108.77576 * 305.36535 * 9 8 7 11 11 C 1.34771 * 120.63086 * 233.58470 * 10 9 8 12 12 O 1.21277 * 120.00314 * 180.02562 * 11 10 9 13 13 C 1.50704 * 120.00049 * 0.02562 * 11 10 9 14 14 S 1.80998 * 109.47263 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99921 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00331 * 180.02562 * 15 14 13 18 18 N 1.31638 * 119.99704 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46996 * 60.00218 * 19 17 15 21 21 H 1.48501 * 109.46864 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47132 * 299.99784 * 19 17 15 23 23 C 1.46929 * 118.73732 * 53.60420 * 10 9 8 24 24 H 4.40886 * 5.52279 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47396 * 343.86334 * 3 2 1 26 26 H 1.09006 * 109.46862 * 223.86694 * 3 2 1 27 27 H 1.00899 * 111.00150 * 303.94916 * 4 3 2 28 28 H 1.08997 * 109.46292 * 298.69028 * 7 5 4 29 29 H 1.09001 * 109.46229 * 58.65507 * 7 5 4 30 30 H 1.09000 * 109.49953 * 301.41284 * 8 7 5 31 31 H 1.09000 * 109.52299 * 181.33370 * 8 7 5 32 32 H 1.08992 * 109.58914 * 185.57513 * 9 8 7 33 33 H 1.09008 * 109.58493 * 65.15247 * 9 8 7 34 34 H 1.08995 * 109.47111 * 300.00307 * 13 11 10 35 35 H 1.09002 * 109.47121 * 59.99900 * 13 11 10 36 36 H 0.97005 * 119.99914 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.58283 * 186.60223 * 23 10 9 38 38 H 1.09002 * 109.70060 * 66.24994 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.3328 -1.3446 5 6 4.6040 0.3434 -1.3825 6 1 4.9898 0.7167 -0.4338 7 6 5.0797 1.2503 -2.5197 8 6 6.6096 1.2878 -2.5386 9 6 7.1480 -0.1243 -2.7889 10 7 6.5790 -1.0325 -1.7837 11 6 7.3804 -1.8079 -1.0268 12 8 6.8985 -2.5537 -0.2008 13 6 8.8754 -1.7482 -1.2069 14 16 9.6683 -2.8965 -0.0542 15 6 11.3594 -2.6279 -0.4694 16 1 11.6200 -1.9182 -1.2407 17 6 12.3568 -3.3291 0.1939 18 7 12.0392 -4.1945 1.1336 19 14 14.1497 -3.0449 -0.2469 20 1 14.4969 -1.6201 -0.0133 21 1 15.0106 -3.9089 0.6002 22 1 14.3668 -3.3793 -1.6773 23 6 5.1196 -1.0795 -1.6197 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9864 0.2856 26 1 3.0090 0.7418 0.7122 27 1 2.7604 -0.3023 -2.0331 28 1 4.7143 0.8625 -3.4706 29 1 4.6937 2.2581 -2.3663 30 1 6.9765 1.6522 -1.5790 31 1 6.9480 1.9523 -3.3335 32 1 8.2347 -0.1213 -2.7050 33 1 6.8573 -0.4548 -3.7861 34 1 9.1295 -2.0262 -2.2297 35 1 9.2251 -0.7351 -1.0082 36 1 12.7363 -4.6843 1.5975 37 1 4.8681 -1.7066 -0.7644 38 1 4.6616 -1.4887 -2.5202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207410436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -5.339662 kcal Electronic energy + Delta-G solvation = -19365.173869 eV Core-core repulsion = 16334.194891 eV Total energy + Delta-G solvation = -3030.978978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28536 -39.03002 -36.87197 -34.59086 -34.23497 -33.06620 -31.60862 -29.89541 -27.70453 -26.47571 -26.13321 -23.44281 -21.97709 -20.51729 -19.50492 -19.13759 -18.21261 -17.31436 -16.88580 -16.78170 -16.30981 -16.07307 -15.75532 -15.49510 -15.19432 -14.80412 -14.48776 -14.35045 -14.02253 -13.95967 -13.59614 -13.46082 -13.17348 -12.86675 -12.63406 -12.37972 -11.98648 -11.91131 -11.72944 -11.66475 -11.44078 -11.25330 -11.13190 -10.92214 -10.27604 -9.97607 -9.37766 -8.68776 -8.34943 -6.13853 1.23981 1.44097 1.44849 1.52869 1.54971 1.73148 1.88750 2.07375 2.27125 2.99175 3.15427 3.24033 3.53960 3.63989 3.77310 3.95137 4.02353 4.06530 4.24563 4.25250 4.36688 4.43395 4.48055 4.54500 4.67878 4.75371 4.80725 4.94372 5.07743 5.11240 5.27290 5.35232 5.40980 5.47393 5.85472 6.18984 6.22950 6.28102 6.67276 7.06025 7.09968 8.74117 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.003293 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.790800 B = 8500.298994 C = 9188.480631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.224 4.224 3 C 0.162 3.838 4 N -0.668 5.668 5 C 0.083 3.917 6 H 0.070 0.930 7 C -0.098 4.098 8 C -0.129 4.129 9 C 0.096 3.904 10 N -0.603 5.603 11 C 0.531 3.469 12 O -0.569 6.569 13 C -0.122 4.122 14 S -0.155 6.155 15 C -0.545 4.545 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.261 1.261 23 C 0.085 3.915 24 H 0.248 0.752 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.351 0.649 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 13.745 -10.776 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.225 4.225 3 C 0.034 3.966 4 N -0.299 5.299 5 C -0.028 4.028 6 H 0.089 0.911 7 C -0.136 4.136 8 C -0.167 4.167 9 C -0.025 4.025 10 N -0.337 5.337 11 C 0.319 3.681 12 O -0.448 6.448 13 C -0.273 4.273 14 S 0.072 5.928 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.185 1.185 23 C -0.040 4.040 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.170 0.830 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.467 13.220 -9.350 23.818 hybrid contribution 1.557 -0.503 -0.543 1.724 sum -15.910 12.717 -9.893 22.644 Atomic orbital electron populations 1.25742 0.96772 0.99795 0.97632 1.23220 0.94876 1.01622 1.02762 1.18888 0.84909 1.00544 0.92251 1.60700 1.06636 1.57200 1.05351 1.21920 0.86622 0.93510 1.00735 0.91120 1.21448 0.94541 1.00016 0.97607 1.21922 0.95670 0.95594 1.03532 1.22132 0.99604 0.89411 0.91393 1.48039 1.06235 1.41347 1.38081 1.20199 0.88517 0.79358 0.80046 1.90670 1.76753 1.40754 1.36602 1.23359 0.94117 1.04907 1.04902 1.85612 1.03694 1.53793 1.49703 1.23156 0.91304 1.29195 1.25602 0.89774 1.26155 1.05010 0.93893 0.94170 1.70188 1.35589 1.25306 1.23804 0.84992 0.75490 0.78768 0.78683 1.18550 1.20492 1.18546 1.22436 0.79937 0.99117 1.02484 0.73529 0.93119 0.88602 0.82986 0.90308 0.90185 0.92317 0.87462 0.89231 0.88958 0.87337 0.87340 0.92001 0.91861 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 19.25 74.32 1.43 -1.43 16 2 C -0.22 -4.38 13.60 31.12 0.42 -3.96 16 3 C 0.16 3.09 5.96 84.50 0.50 3.60 16 4 N -0.67 -11.38 6.22 -500.91 -3.12 -14.49 16 5 C 0.08 1.50 2.62 44.99 0.12 1.62 16 6 H 0.07 1.52 7.80 -2.39 -0.02 1.50 16 7 C -0.10 -1.33 5.49 30.62 0.17 -1.16 16 8 C -0.13 -1.77 6.08 30.67 0.19 -1.59 16 9 C 0.10 1.73 6.34 86.36 0.55 2.28 16 10 N -0.60 -16.03 2.97 -818.92 -2.43 -18.47 16 11 C 0.53 20.23 7.72 87.66 0.68 20.90 16 12 O -0.57 -27.04 15.27 -3.02 -0.05 -27.08 16 13 C -0.12 -4.87 4.50 71.24 0.32 -4.55 16 14 S -0.16 -8.69 20.57 -56.49 -1.16 -9.86 16 15 C -0.54 -31.03 9.50 67.95 0.65 -30.38 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.70 5.49 84.86 0.47 1.17 16 18 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 19 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 C 0.08 1.94 5.69 86.36 0.49 2.43 16 24 H 0.25 1.86 7.80 -4.42 -0.03 1.83 16 25 H 0.05 1.05 7.56 -2.39 -0.02 1.03 16 26 H 0.10 1.79 8.06 -2.38 -0.02 1.78 16 27 H 0.35 5.31 8.39 -89.69 -0.75 4.56 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.67 5.93 -2.39 -0.01 1.66 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.11 3.91 7.94 -2.40 -0.02 3.89 16 35 H 0.11 3.91 7.69 -2.39 -0.02 3.89 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 37 H 0.06 1.83 6.48 -2.39 -0.02 1.82 16 38 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -76.79 333.92 1.83 -74.95 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.30 Total: 16.64 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 5.98 Total: -11.08 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -5.27 Total: -88.94 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -76.79 1.83 -74.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds