Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99633 * 0.54561 * 6 5 4 8 8 C 1.50699 * 119.99976 * 179.72370 * 7 6 5 9 9 O 1.42899 * 109.47349 * 269.98410 * 8 7 6 10 10 C 1.42904 * 114.00155 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47072 * 29.99147 * 10 9 8 12 12 C 1.50699 * 109.47305 * 149.99824 * 10 9 8 13 13 H 1.08001 * 119.99902 * 359.97438 * 12 10 9 14 14 C 1.37876 * 119.99747 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00052 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99856 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46854 * 60.00217 * 16 14 12 18 18 H 1.48503 * 109.47176 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47272 * 300.00200 * 16 14 12 20 20 C 1.53001 * 109.46583 * 269.99841 * 10 9 8 21 21 Cl 1.80302 * 109.47511 * 65.00101 * 20 10 9 22 22 C 1.38237 * 120.00237 * 359.70804 * 7 6 5 23 23 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 32 32 H 1.08001 * 120.00082 * 180.27375 * 6 5 4 33 33 H 1.09001 * 109.47028 * 29.98296 * 8 7 6 34 34 H 1.09003 * 109.47164 * 149.97780 * 8 7 6 35 35 H 0.97004 * 119.99798 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.46768 * 184.99820 * 20 10 9 37 37 H 1.08998 * 109.47494 * 304.99624 * 20 10 9 38 38 H 1.07997 * 119.99822 * 179.97438 * 22 7 6 39 39 H 1.07991 * 120.00142 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9532 -2.0140 -3.4879 8 6 3.4551 -2.7247 -4.7184 9 8 2.5137 -3.7271 -5.1069 10 6 2.8963 -4.4644 -6.2697 11 1 3.9837 -4.5153 -6.3261 12 6 2.3317 -5.8593 -6.1884 13 1 1.7401 -6.1534 -5.3340 14 6 2.5703 -6.7598 -7.2048 15 7 3.2910 -6.4017 -8.2449 16 14 1.8709 -8.4890 -7.1038 17 1 0.3895 -8.4201 -7.0259 18 1 2.2685 -9.2552 -8.3122 19 1 2.3993 -9.1667 -5.8927 20 6 2.3530 -3.7661 -7.5179 21 17 3.1400 -2.1536 -7.6952 22 6 3.2875 -2.4861 -2.2324 23 6 2.8271 -1.8343 -1.1037 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.0688 0.6339 -2.5850 32 1 1.8978 -0.5209 -4.5956 33 1 3.5760 -2.0061 -5.5291 34 1 4.4154 -3.1926 -4.5014 35 1 3.4591 -7.0354 -8.9598 36 1 2.5680 -4.3739 -8.3968 37 1 1.2751 -3.6357 -7.4211 38 1 3.9079 -3.3646 -2.1334 39 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222111640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -57.904537 kcal Electronic energy + Delta-G solvation = -19548.444396 eV Core-core repulsion = 16480.849576 eV Total energy + Delta-G solvation = -3067.594820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47216 -37.20226 -35.43268 -34.65277 -33.22233 -30.80736 -30.54363 -28.77984 -27.25532 -25.47512 -25.10496 -22.67266 -21.73114 -20.90084 -19.79813 -16.85465 -16.25238 -15.74435 -15.44054 -14.96987 -14.53413 -14.30430 -13.80543 -13.67899 -13.58537 -13.29538 -13.05046 -12.62843 -12.40767 -12.11922 -12.01441 -11.89594 -11.36488 -11.23745 -11.17370 -11.05332 -10.99938 -10.76358 -10.58837 -10.52292 -10.38600 -9.81348 -9.40974 -9.31345 -8.64776 -8.61185 -8.32978 -8.06067 -6.31462 -4.37685 1.55649 1.67935 3.20003 3.25557 3.28658 3.47363 3.93360 4.23073 4.64227 4.75585 4.97074 5.05706 5.11054 5.18860 5.24416 5.38024 5.49014 5.60154 5.61619 5.70375 5.73784 5.84282 5.88655 6.01453 6.11907 6.15019 6.20098 6.34607 6.36749 6.38339 6.52658 6.69681 6.80571 6.91587 7.02976 7.26807 7.31713 7.64740 7.95925 8.38128 8.80631 9.30146 10.75585 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.003958 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.599738 B = 7072.459415 C = 7895.985815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.120 4.120 6 C -0.097 4.097 7 C -0.073 4.073 8 C 0.085 3.915 9 O -0.380 6.380 10 C 0.214 3.786 11 H 0.032 0.968 12 C -0.514 4.514 13 H 0.072 0.928 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.912 3.088 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.030 4.030 21 Cl -0.252 7.252 22 C -0.099 4.099 23 C -0.123 4.123 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 11.402 11.566 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.085 4.085 5 C -0.138 4.138 6 C -0.116 4.116 7 C -0.074 4.074 8 C 0.008 3.992 9 O -0.300 6.300 10 C 0.157 3.843 11 H 0.049 0.951 12 C -0.552 4.552 13 H 0.091 0.909 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.739 3.261 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.093 4.093 21 Cl -0.227 7.227 22 C -0.118 4.118 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.804 11.402 11.464 16.269 hybrid contribution -0.077 -0.857 -0.317 0.917 sum -1.881 10.544 11.147 15.459 Atomic orbital electron populations 1.21857 0.94500 1.02117 1.01658 1.20091 0.95856 0.95860 0.95527 1.21851 1.01191 0.95306 1.01685 1.19773 0.98209 0.96062 0.94433 1.20872 1.00780 1.00252 0.91918 1.21076 0.96508 0.95388 0.98580 1.19888 0.97659 0.95170 0.94633 1.21616 0.91968 0.91918 0.93713 1.87928 1.45291 1.49035 1.47710 1.20001 0.95910 0.89042 0.79373 0.95075 1.21056 1.34055 0.93751 1.06360 0.90934 1.24999 0.94707 0.99591 0.94892 1.69803 1.37978 1.36177 1.09057 0.86309 0.79523 0.82590 0.77672 1.19861 1.21002 1.19852 1.25909 0.97592 0.79336 1.06419 1.98596 1.85438 1.40704 1.97935 1.21098 0.99717 0.99029 0.91913 1.20965 0.99011 0.95911 0.98259 0.92442 0.92689 0.92425 0.90749 0.92674 0.92598 0.92458 0.86535 0.86041 0.91115 0.93922 0.92035 0.85446 0.91023 0.86049 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.00 37.16 0.33 -1.00 16 2 C -0.05 -0.55 3.09 -91.77 -0.28 -0.83 16 3 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16 4 C -0.08 -1.09 4.78 -104.62 -0.50 -1.59 16 5 C -0.12 -1.63 8.71 -39.58 -0.34 -1.98 16 6 C -0.10 -1.55 9.70 -39.58 -0.38 -1.93 16 7 C -0.07 -1.29 5.51 -104.62 -0.58 -1.86 16 8 C 0.08 1.68 5.66 36.01 0.20 1.88 16 9 O -0.38 -8.98 9.94 -35.23 -0.35 -9.33 16 10 C 0.21 5.36 2.38 -27.88 -0.07 5.30 16 11 H 0.03 0.84 7.79 -51.93 -0.40 0.43 16 12 C -0.51 -13.87 8.89 -34.44 -0.31 -14.18 16 13 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 15 N -0.89 -23.94 11.29 55.43 0.63 -23.32 16 16 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.03 -0.70 6.17 37.16 0.23 -0.48 16 21 Cl -0.25 -5.20 26.09 -51.86 -1.35 -6.56 16 22 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 23 C -0.12 -1.68 9.67 -39.58 -0.38 -2.07 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.54 7.37 -51.93 -0.38 0.15 16 27 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 7.41 -51.93 -0.38 0.12 16 31 H 0.12 1.34 7.10 -52.48 -0.37 0.96 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.07 1.39 5.03 -51.93 -0.26 1.13 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.13 3.21 5.95 -51.93 -0.31 2.90 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 1.32 7.95 -52.49 -0.42 0.90 16 LS Contribution 333.21 15.07 5.02 5.02 Total: -1.00 -27.25 333.21 -9.16 -36.41 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.86 Total: 2.46 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.22 Total: -20.11 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.63 Total: -23.32 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.35 Total: -9.33 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -5.20 SS G_CDS: -1.35 Total: -6.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.25 -9.16 -36.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222111640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.496 kcal (2) G-P(sol) polarization free energy of solvation -27.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds