Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47173 * 2 1 4 4 C 1.50698 * 109.47203 * 120.00154 * 2 1 3 5 5 C 1.38260 * 119.99559 * 299.99512 * 4 2 1 6 6 C 1.38212 * 119.99650 * 179.71963 * 5 4 2 7 7 C 1.38255 * 120.00300 * 0.28729 * 6 5 4 8 8 C 1.38216 * 119.99744 * 359.97134 * 7 6 5 9 9 C 1.38208 * 120.00333 * 120.19364 * 4 2 1 10 10 C 1.50698 * 120.00186 * 0.03695 * 9 4 2 11 11 O 1.42895 * 109.47473 * 180.17305 * 10 9 4 12 12 C 1.42901 * 114.00198 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.47058 * 29.99588 * 12 11 10 14 14 C 1.50700 * 109.47205 * 150.00223 * 12 11 10 15 15 H 1.08001 * 119.99877 * 359.97438 * 14 12 11 16 16 C 1.37884 * 119.99916 * 180.02562 * 14 12 11 17 17 N 1.31513 * 119.99874 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99810 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47336 * 89.99707 * 18 16 14 20 20 H 1.48503 * 109.47154 * 210.00114 * 18 16 14 21 21 H 1.48502 * 109.47288 * 329.99872 * 18 16 14 22 22 C 1.53004 * 109.46851 * 269.99935 * 12 11 10 23 23 Cl 1.80294 * 109.47016 * 65.00111 * 22 12 11 24 24 H 1.09001 * 109.46894 * 300.00360 * 1 2 3 25 25 H 1.09003 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.08998 * 109.46697 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47349 * 239.99918 * 2 1 3 28 28 H 1.08995 * 109.47053 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46537 * 299.99819 * 3 2 1 30 30 H 1.08994 * 109.46846 * 60.00104 * 3 2 1 31 31 H 1.08002 * 120.00476 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 6 5 4 33 33 H 1.08005 * 120.00230 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.99715 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47087 * 300.17638 * 10 9 4 36 36 H 1.09005 * 109.46886 * 60.17257 * 10 9 4 37 37 H 0.96993 * 119.99950 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.47107 * 184.99786 * 22 12 11 39 39 H 1.09000 * 109.47260 * 304.99758 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6984 -0.2380 2.4861 6 6 2.1543 -0.8929 3.6146 7 6 2.9492 -2.0169 3.4878 8 6 3.2874 -2.4861 2.2325 9 6 2.8302 -1.8318 1.1037 10 6 3.1986 -2.3437 -0.2650 11 8 4.0197 -3.5058 -0.1339 12 6 4.4274 -4.0731 -1.3805 13 1 4.5038 -3.2857 -2.1303 14 6 5.7684 -4.7403 -1.2141 15 1 6.2603 -4.7317 -0.2527 16 6 6.3678 -5.3610 -2.2897 17 7 5.7690 -5.3711 -3.4605 18 14 8.0302 -6.1874 -2.0836 19 1 7.8326 -7.6062 -1.6922 20 1 8.7755 -6.1270 -3.3666 21 1 8.8043 -5.4860 -1.0281 22 6 3.3951 -5.1084 -1.8316 23 17 1.8276 -4.2852 -2.1721 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.0772 0.6399 2.5853 32 1 1.8900 -0.5263 4.5955 33 1 3.3058 -2.5285 4.3697 34 1 3.9087 -3.3639 2.1335 35 1 2.2920 -2.5993 -0.8135 36 1 3.7454 -1.5717 -0.8066 37 1 6.1904 -5.8080 -4.2170 38 1 3.7489 -5.6044 -2.7355 39 1 3.2536 -5.8477 -1.0432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223908501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -56.662560 kcal Electronic energy + Delta-G solvation = -20157.922320 eV Core-core repulsion = 17090.381356 eV Total energy + Delta-G solvation = -3067.540964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.56397 -37.05270 -35.21102 -34.73749 -33.37072 -31.42224 -29.54792 -28.89715 -27.08230 -25.53048 -25.12092 -23.25093 -21.11844 -20.71859 -19.64232 -16.94787 -16.21171 -16.02334 -15.06778 -14.86575 -14.66020 -14.26475 -13.73315 -13.65065 -13.48778 -13.38955 -12.85804 -12.47043 -12.32811 -12.14462 -11.92429 -11.82618 -11.41135 -11.21855 -11.14379 -11.06351 -10.98182 -10.82552 -10.41990 -10.38707 -10.35351 -9.78947 -9.42713 -9.32476 -8.64713 -8.52057 -8.42978 -7.89496 -6.33247 -4.39353 1.64008 1.73598 3.17240 3.25151 3.29234 3.46327 4.06376 4.18073 4.69975 4.84188 4.94423 5.02922 5.26326 5.28455 5.37237 5.39834 5.59388 5.65559 5.72714 5.85374 5.89708 5.98882 6.05933 6.12509 6.20427 6.30949 6.31546 6.34155 6.37476 6.45227 6.52490 6.75781 6.81902 6.93309 7.07570 7.29930 7.34000 7.63308 7.93914 8.35780 8.78650 9.28597 10.73989 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018869 B = 0.005030 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.531965 B = 5564.736920 C = 6257.463883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.120 4.120 6 C -0.131 4.131 7 C -0.129 4.129 8 C -0.093 4.093 9 C -0.069 4.069 10 C 0.085 3.915 11 O -0.384 6.384 12 C 0.215 3.785 13 H 0.031 0.969 14 C -0.514 4.514 15 H 0.073 0.927 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.911 3.089 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.031 4.031 23 Cl -0.251 7.251 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.128 0.872 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 8.637 7.363 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.198 4.198 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.111 4.111 9 C -0.069 4.069 10 C 0.009 3.991 11 O -0.303 6.303 12 C 0.158 3.842 13 H 0.049 0.951 14 C -0.552 4.552 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.738 3.262 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.093 4.093 23 Cl -0.226 7.226 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.766 8.550 7.314 13.671 hybrid contribution 0.690 -0.425 -0.222 0.840 sum -7.076 8.125 7.092 12.898 Atomic orbital electron populations 1.21819 0.94498 1.02037 1.01427 1.20179 0.95876 0.95980 0.96226 1.21827 1.01366 0.95155 1.01479 1.19555 0.98068 0.95450 0.94655 1.20785 1.01045 1.00071 0.91885 1.21010 0.99324 0.96603 0.97991 1.21139 0.99157 0.97008 0.97413 1.21138 0.98690 0.99991 0.91252 1.19842 0.96740 0.94616 0.95695 1.21544 0.95981 0.88834 0.92757 1.87804 1.68200 1.41756 1.32571 1.19987 0.91124 0.91301 0.81749 0.95087 1.21078 1.01169 1.35605 0.97321 0.90865 1.24996 0.98673 0.95797 0.94715 1.69808 1.38938 1.43470 1.00735 0.86259 0.82506 0.79621 0.77777 1.20298 1.20916 1.19502 1.25907 0.79410 0.98890 1.05100 1.98598 1.43818 1.83622 1.96539 0.92741 0.92574 0.92476 0.89912 0.92494 0.92548 0.92715 0.86649 0.86799 0.86556 0.84652 0.90390 0.93327 0.92084 0.85451 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.01 37.16 0.33 -1.28 16 2 C -0.06 -0.85 2.96 -91.77 -0.27 -1.12 16 3 C -0.14 -1.59 9.01 37.16 0.33 -1.26 16 4 C -0.08 -1.16 4.78 -104.63 -0.50 -1.66 16 5 C -0.12 -1.60 8.71 -39.58 -0.34 -1.94 16 6 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 7 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 8 C -0.09 -1.60 9.38 -39.58 -0.37 -1.97 16 9 C -0.07 -1.21 5.88 -104.63 -0.62 -1.83 16 10 C 0.09 1.67 4.39 36.00 0.16 1.83 16 11 O -0.38 -8.75 8.43 -35.23 -0.30 -9.05 16 12 C 0.22 5.29 2.38 -27.88 -0.07 5.23 16 13 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 14 C -0.51 -13.59 8.89 -34.44 -0.31 -13.89 16 15 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 17 N -0.89 -23.69 11.29 55.43 0.63 -23.06 16 18 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 23 Cl -0.25 -5.16 26.09 -51.86 -1.35 -6.51 16 24 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.20 6.01 -51.93 -0.31 0.89 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 31 H 0.12 1.27 7.10 -52.49 -0.37 0.90 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.14 2.50 7.01 -52.49 -0.37 2.13 16 35 H 0.08 1.53 4.78 -51.93 -0.25 1.28 16 36 H 0.05 0.95 7.80 -51.93 -0.41 0.55 16 37 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 38 H 0.13 3.18 5.95 -51.93 -0.31 2.87 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -26.55 327.78 -9.10 -35.66 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.69 Total: 4.08 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.31 Total: -21.27 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.63 Total: -23.06 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.30 Total: -9.05 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -5.16 SS G_CDS: -1.35 Total: -6.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.55 -9.10 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223908501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.004 kcal (2) G-P(sol) polarization free energy of solvation -26.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds