Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46625 * 2 1 4 4 C 1.50696 * 109.47153 * 119.99813 * 2 1 3 5 5 C 1.38253 * 120.00601 * 299.98343 * 4 2 1 6 6 C 1.38208 * 120.00194 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00129 * 359.81269 * 6 5 4 8 8 C 1.38215 * 119.99823 * 0.44089 * 7 6 5 9 9 C 1.50700 * 119.99922 * 179.79339 * 8 7 6 10 10 O 1.42903 * 109.46631 * 269.71937 * 9 8 7 11 11 C 1.42899 * 113.99745 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47206 * 30.00563 * 11 10 9 13 13 C 1.50702 * 109.46876 * 150.00272 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.53000 * 109.47309 * 270.00386 * 11 10 9 22 22 Cl 1.80292 * 109.47199 * 65.00174 * 21 11 10 23 23 C 1.38217 * 119.99198 * 120.00273 * 4 2 1 24 24 H 1.09000 * 109.47348 * 299.99640 * 1 2 3 25 25 H 1.08998 * 109.47052 * 59.99915 * 1 2 3 26 26 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46979 * 240.00339 * 2 1 3 28 28 H 1.08999 * 109.46537 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47475 * 299.99825 * 3 2 1 30 30 H 1.09007 * 109.47054 * 60.00522 * 3 2 1 31 31 H 1.08001 * 119.99738 * 359.97243 * 5 4 2 32 32 H 1.07998 * 119.99886 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.00377 * 180.22992 * 7 6 5 34 34 H 1.09004 * 109.47067 * 149.72865 * 9 8 7 35 35 H 1.08995 * 109.47227 * 29.72003 * 9 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.46994 * 184.99833 * 21 11 10 38 38 H 1.08996 * 109.47227 * 304.99688 * 21 11 10 39 39 H 1.07995 * 120.00544 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6987 -0.2379 2.4862 6 6 2.1590 -0.8897 3.6146 7 6 2.9500 -2.0166 3.4877 8 6 3.2879 -2.4859 2.2324 9 6 4.1538 -3.7115 2.0941 10 8 5.5278 -3.3212 2.0495 11 6 6.4386 -4.4146 1.9193 12 1 5.9587 -5.2237 1.3687 13 6 7.6668 -3.9592 1.1741 14 1 7.7442 -2.9370 0.8343 15 6 8.6943 -4.8460 0.9315 16 7 8.6002 -6.0907 1.3456 17 14 10.2199 -4.2796 0.0145 18 1 10.8688 -3.1760 0.7673 19 1 11.1686 -5.4146 -0.1166 20 1 9.8353 -3.7979 -1.3365 21 6 6.8406 -4.9119 3.3093 22 17 5.3953 -5.5921 4.1454 23 6 2.8270 -1.8341 1.1035 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.0784 0.6406 2.5853 32 1 1.8987 -0.5204 4.5955 33 1 3.3066 -2.5281 4.3695 34 1 3.8955 -4.2370 1.1747 35 1 3.9906 -4.3699 2.9472 36 1 9.3229 -6.7147 1.1746 37 1 7.6019 -5.6860 3.2121 38 1 7.2394 -4.0810 3.8911 39 1 3.0876 -2.2033 0.1226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223946358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = -57.810979 kcal Electronic energy + Delta-G solvation = -19665.097963 eV Core-core repulsion = 16597.507200 eV Total energy + Delta-G solvation = -3067.590763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47218 -37.16270 -35.37678 -34.67337 -33.27548 -31.33561 -29.80929 -28.85738 -27.20575 -25.49259 -25.10665 -22.92341 -21.78710 -20.91356 -19.31485 -16.80457 -16.36583 -15.83865 -15.54959 -14.97908 -14.52742 -14.28837 -13.87730 -13.59986 -13.52932 -13.40808 -12.83472 -12.54958 -12.35298 -12.01801 -11.92464 -11.90009 -11.58989 -11.19744 -11.17862 -11.03088 -10.97361 -10.78563 -10.55411 -10.51266 -10.38535 -9.80506 -9.40991 -9.31880 -8.62536 -8.54192 -8.39333 -8.06596 -6.31500 -4.37635 1.58576 1.65356 3.19897 3.25521 3.28598 3.47406 3.93822 4.23009 4.67563 4.79323 4.97300 5.05779 5.16454 5.19511 5.31509 5.39908 5.53176 5.56271 5.67545 5.73454 5.75147 5.84412 5.89698 6.05822 6.14287 6.18639 6.20769 6.35391 6.37530 6.38396 6.52712 6.71725 6.81116 6.91656 7.02325 7.26921 7.31689 7.64688 7.95883 8.37937 8.80554 9.30121 10.75558 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.004502 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.821368 B = 6217.411319 C = 7435.784505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.067 4.067 9 C 0.085 3.915 10 O -0.379 6.379 11 C 0.214 3.786 12 H 0.032 0.968 13 C -0.514 4.514 14 H 0.072 0.928 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.912 3.088 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.030 4.030 22 Cl -0.252 7.252 23 C -0.099 4.099 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 8.862 0.561 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.084 4.084 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.067 4.067 9 C 0.008 3.992 10 O -0.299 6.299 11 C 0.157 3.843 12 H 0.049 0.951 13 C -0.552 4.552 14 H 0.091 0.909 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.739 3.261 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.093 4.093 22 Cl -0.227 7.227 23 C -0.117 4.117 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.487 8.820 0.628 15.301 hybrid contribution 0.795 -0.150 -0.304 0.864 sum -11.692 8.670 0.325 14.559 Atomic orbital electron populations 1.21847 0.94622 1.01904 1.01569 1.20104 0.95643 0.96027 0.95715 1.21850 1.01571 0.95133 1.01499 1.19769 0.98268 0.95853 0.94503 1.20850 1.00956 0.99943 0.92080 1.21051 0.98799 0.96147 0.98225 1.21083 0.97593 0.96341 0.97207 1.19880 0.96731 0.97059 0.93046 1.21620 0.83573 0.92882 1.01146 1.87929 1.13039 1.34608 1.94347 1.20002 0.88634 0.85728 0.89961 0.95078 1.21056 1.00710 0.98236 1.35182 0.90946 1.24996 0.98909 0.94651 0.95606 1.69803 1.33648 1.03668 1.45899 0.86313 0.81363 0.78226 0.80220 1.19867 1.20988 1.19857 1.25910 0.87031 1.01040 0.95309 1.98595 1.51980 1.88775 1.83313 1.21018 0.97183 0.95002 0.98528 0.92607 0.92641 0.92575 0.90484 0.92316 0.92644 0.92627 0.86696 0.86442 0.86087 0.93920 0.91076 0.92037 0.85421 0.91026 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.01 37.16 0.33 -0.98 16 2 C -0.06 -0.62 3.09 -91.77 -0.28 -0.90 16 3 C -0.14 -1.43 9.01 37.16 0.33 -1.10 16 4 C -0.08 -1.14 4.78 -104.63 -0.50 -1.64 16 5 C -0.12 -1.54 8.71 -39.59 -0.34 -1.89 16 6 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 7 C -0.10 -1.66 9.70 -39.58 -0.38 -2.04 16 8 C -0.07 -1.18 5.51 -104.62 -0.58 -1.75 16 9 C 0.08 1.68 5.67 36.01 0.20 1.88 16 10 O -0.38 -8.97 9.94 -35.23 -0.35 -9.32 16 11 C 0.21 5.36 2.38 -27.88 -0.07 5.29 16 12 H 0.03 0.84 7.79 -51.93 -0.40 0.43 16 13 C -0.51 -13.84 8.89 -34.44 -0.31 -14.14 16 14 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 16 N -0.89 -23.92 11.28 55.43 0.63 -23.29 16 17 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 22 Cl -0.25 -5.20 26.09 -51.86 -1.35 -6.56 16 23 C -0.10 -1.58 9.33 -39.58 -0.37 -1.95 16 24 H 0.05 0.49 7.39 -51.93 -0.38 0.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 31 H 0.12 1.21 7.10 -52.49 -0.37 0.83 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.07 1.40 5.03 -51.93 -0.26 1.14 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 37 H 0.13 3.22 5.94 -51.93 -0.31 2.91 16 38 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.12 1.86 7.95 -52.49 -0.42 1.44 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -27.20 333.19 -9.16 -36.36 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.86 Total: 2.67 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.22 Total: -20.30 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.63 Total: -23.29 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.35 Total: -9.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -5.20 SS G_CDS: -1.35 Total: -6.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.20 -9.16 -36.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223946358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.447 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds