Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47411 * 2 1 4 4 O 1.42906 * 109.47205 * 239.99801 * 2 1 3 5 5 C 1.42900 * 113.99774 * 90.00138 * 4 2 1 6 6 C 1.52998 * 109.46835 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47132 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47239 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47264 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00327 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00213 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99632 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46945 * 89.99833 * 13 11 9 15 15 H 1.48499 * 109.46709 * 209.99773 * 13 11 9 16 16 H 1.48498 * 109.46953 * 329.99674 * 13 11 9 17 17 C 1.50696 * 109.47396 * 119.99902 * 2 1 3 18 18 C 1.38247 * 119.98658 * 265.00270 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38218 * 119.98923 * 359.44450 * 22 20 19 24 24 H 1.09000 * 109.46946 * 300.00410 * 1 2 3 25 25 H 1.09002 * 109.47217 * 60.00360 * 1 2 3 26 26 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46636 * 299.99900 * 5 4 2 28 28 H 1.08995 * 109.47586 * 60.00284 * 5 4 2 29 29 H 1.08997 * 109.47003 * 299.99614 * 6 5 4 30 30 H 1.09003 * 109.47384 * 59.99523 * 6 5 4 31 31 H 1.08997 * 109.47164 * 299.99885 * 7 6 5 32 32 H 1.08995 * 109.47135 * 60.00048 * 7 6 5 33 33 H 1.08997 * 109.47212 * 300.00178 * 8 7 6 34 34 H 1.09003 * 109.47068 * 60.00022 * 8 7 6 35 35 H 0.97005 * 119.99946 * 179.97438 * 12 11 9 36 36 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 37 37 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 39 39 H 1.07997 * 119.99399 * 180.27944 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7079 -0.6409 -3.4791 7 6 2.9148 0.2760 -4.6863 8 6 3.4232 -0.5476 -5.8712 9 6 3.6276 0.3556 -7.0600 10 1 3.4164 1.4116 -6.9785 11 6 4.0852 -0.1659 -8.2516 12 7 4.2630 0.6223 -9.2892 13 14 4.4512 -1.9924 -8.3924 14 1 3.2283 -2.7096 -8.8344 15 1 5.5355 -2.2048 -9.3844 16 1 4.8806 -2.5145 -7.0702 17 6 2.0324 -0.7104 1.2304 18 6 2.3611 0.0144 2.3609 19 6 2.8214 -0.6366 3.4899 20 6 2.9537 -2.0138 3.4884 21 17 3.5312 -2.8322 4.9063 22 6 2.6307 -2.7379 2.3547 23 6 2.1651 -2.0864 1.2281 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.2537 0.6546 -2.5588 28 1 2.9320 0.9512 -2.0451 29 1 3.6541 -1.1129 -3.2146 30 1 1.9758 -1.4091 -3.7280 31 1 1.9684 0.7477 -4.9507 32 1 3.6468 1.0444 -4.4377 33 1 4.3697 -1.0190 -5.6066 34 1 2.6915 -1.3163 -6.1200 35 1 4.5854 0.2554 -10.1273 36 1 2.2581 1.0895 2.3618 37 1 3.0785 -0.0702 4.3728 38 1 2.7381 -3.8126 2.3514 39 1 1.9086 -2.6520 0.3446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224692703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = -72.630944 kcal Electronic energy + Delta-G solvation = -18690.396626 eV Core-core repulsion = 15622.163221 eV Total energy + Delta-G solvation = -3068.233405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68434 -39.01642 -37.44574 -36.48890 -34.55495 -33.38007 -32.04490 -30.78282 -29.94925 -26.67445 -24.68662 -23.87602 -22.96696 -22.05057 -21.54920 -18.87302 -18.22587 -17.67433 -16.92310 -16.72026 -16.31538 -15.88543 -15.51845 -15.36037 -14.80194 -14.55420 -14.43506 -14.13809 -14.03082 -13.78210 -13.42629 -13.32723 -12.90971 -12.71313 -12.51130 -12.43063 -12.25870 -12.12941 -11.83349 -11.75997 -11.62534 -11.42800 -11.37127 -11.26834 -10.75984 -10.54431 -10.01381 -9.58385 -8.29311 -6.33195 0.09322 0.32163 1.13609 1.36299 1.38121 1.50547 2.36714 2.51381 2.73335 3.06115 3.70512 3.82880 3.95079 4.08266 4.09443 4.21303 4.32411 4.41330 4.43012 4.48967 4.55443 4.60574 4.69124 4.80914 4.85730 4.90414 5.00299 5.13085 5.14450 5.20812 5.21864 5.25269 5.29912 5.50220 5.56551 5.63714 5.68165 5.80422 6.28255 6.32947 6.75035 7.31610 8.87419 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002484 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.849848 B =11268.957133 C =11885.180510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 H 0.084 0.916 4 O -0.395 6.395 5 C 0.069 3.931 6 C -0.110 4.110 7 C -0.093 4.093 8 C -0.014 4.014 9 C -0.533 4.533 10 H 0.033 0.967 11 C 0.001 3.999 12 N -0.952 5.952 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.247 1.247 17 C -0.089 4.089 18 C -0.099 4.099 19 C -0.113 4.113 20 C -0.047 4.047 21 Cl -0.074 7.074 22 C -0.120 4.120 23 C -0.092 4.092 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -4.421 30.185 31.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.102 0.898 4 O -0.315 6.315 5 C -0.007 4.007 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.051 4.051 9 C -0.571 4.571 10 H 0.051 0.949 11 C -0.195 4.195 12 N -0.593 5.593 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.171 1.171 17 C -0.089 4.089 18 C -0.117 4.117 19 C -0.132 4.132 20 C -0.073 4.073 21 Cl -0.045 7.045 22 C -0.138 4.138 23 C -0.111 4.111 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.158 -4.685 30.141 31.118 hybrid contribution 0.305 -0.350 -0.644 0.794 sum -5.853 -5.035 29.496 30.490 Atomic orbital electron populations 1.22243 0.93852 1.02972 1.03250 1.21000 0.94470 0.95493 0.82732 0.89804 1.87888 1.86838 1.36348 1.20417 1.22542 0.99987 0.92714 0.85432 1.21469 1.01574 0.98620 0.93097 1.21239 1.00407 0.97802 0.93582 1.19547 0.96248 0.95749 0.93575 1.21549 1.43750 0.95450 0.96399 0.94882 1.26057 0.94837 1.03392 0.95261 1.70071 1.48263 1.37918 1.03044 0.85633 0.78490 0.79415 0.78973 1.19098 1.20973 1.17075 1.20045 0.99405 0.94261 0.95179 1.21198 0.97773 1.01320 0.91404 1.21257 0.99872 0.92082 0.99984 1.21133 1.03373 0.93570 0.89230 1.98369 1.87411 1.79342 1.39393 1.21232 0.99729 1.01144 0.91706 1.21068 0.97840 0.94463 0.97705 0.89889 0.91702 0.92341 0.92305 0.92624 0.91936 0.91586 0.92791 0.92974 0.96370 0.96362 0.92519 0.82599 0.83006 0.84082 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.51 71.98 0.68 -1.87 16 2 C 0.12 2.17 2.93 29.85 0.09 2.26 16 3 H 0.08 1.28 7.70 -2.39 -0.02 1.27 16 4 O -0.39 -9.53 9.13 -148.98 -1.36 -10.89 16 5 C 0.07 1.72 5.75 71.98 0.41 2.13 16 6 C -0.11 -3.35 5.58 30.59 0.17 -3.18 16 7 C -0.09 -3.51 5.15 30.59 0.16 -3.36 16 8 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 9 C -0.53 -31.18 9.66 25.60 0.25 -30.94 16 10 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 11 C 0.00 0.06 5.47 84.66 0.46 0.52 16 12 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 13 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 17 C -0.09 -1.59 5.01 -19.86 -0.10 -1.69 16 18 C -0.10 -1.41 9.68 22.27 0.22 -1.19 16 19 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16 20 C -0.05 -0.79 6.32 22.32 0.14 -0.65 16 21 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 22 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 23 C -0.09 -1.78 9.35 22.27 0.21 -1.58 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.00 7.87 -2.39 -0.02 0.98 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.06 1.33 7.87 -2.38 -0.02 1.31 16 28 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 34 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 35 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 36 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.13 2.65 7.63 -2.91 -0.02 2.63 16 Total: -1.00 -66.85 341.63 4.94 -61.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.95 Total: 7.01 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 3.25 Total: -43.39 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.30 Total: -60.12 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.36 Total: -10.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -66.85 4.94 -61.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.728 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds