Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 C 1.53004 * 109.47342 * 239.99741 * 2 1 3 5 5 C 1.50700 * 109.47418 * 119.99803 * 2 1 3 6 6 C 1.38294 * 119.96865 * 0.02562 * 5 2 1 7 7 C 1.38241 * 120.11111 * 180.02562 * 6 5 2 8 8 C 1.38172 * 120.05576 * 359.97057 * 7 6 5 9 9 C 1.38702 * 119.94299 * 0.27942 * 8 7 6 10 10 O 1.35899 * 120.05451 * 179.72590 * 9 8 7 11 11 C 1.42897 * 117.00027 * 355.94738 * 10 9 8 12 12 H 1.09000 * 109.47039 * 27.95748 * 11 10 9 13 13 C 1.50708 * 109.46685 * 147.94948 * 11 10 9 14 14 H 1.07992 * 120.00396 * 5.08843 * 13 11 10 15 15 C 1.37879 * 119.99454 * 185.08500 * 13 11 10 16 16 N 1.31515 * 120.00471 * 5.53692 * 15 13 11 17 17 Si 1.86800 * 119.99588 * 185.52754 * 15 13 11 18 18 H 1.48500 * 109.47055 * 95.00474 * 17 15 13 19 19 H 1.48502 * 109.47266 * 214.99654 * 17 15 13 20 20 H 1.48491 * 109.47495 * 335.00209 * 17 15 13 21 21 C 1.52997 * 109.47544 * 267.95032 * 11 10 9 22 22 Cl 1.80299 * 109.47023 * 65.63201 * 21 11 10 23 23 C 1.38119 * 119.97768 * 180.02562 * 5 2 1 24 24 H 1.09002 * 109.47467 * 300.00120 * 1 2 3 25 25 H 1.09006 * 109.47627 * 60.00295 * 1 2 3 26 26 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46651 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46815 * 299.99695 * 3 2 1 29 29 H 1.08996 * 109.47405 * 59.99903 * 3 2 1 30 30 H 1.08996 * 109.47066 * 300.00400 * 4 2 1 31 31 H 1.09006 * 109.46718 * 60.00235 * 4 2 1 32 32 H 1.08995 * 109.47182 * 179.97438 * 4 2 1 33 33 H 1.08000 * 119.93972 * 0.02562 * 6 5 2 34 34 H 1.07997 * 119.97194 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.02548 * 180.02562 * 8 7 6 36 36 H 0.96999 * 120.00500 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47098 * 185.63343 * 21 11 10 38 38 H 1.09003 * 109.46714 * 305.63348 * 21 11 10 39 39 H 1.08003 * 120.02619 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1331 -1.2361 2.1401 7 6 1.5907 -1.8879 3.2701 8 6 2.9483 -2.0160 3.4930 9 6 3.8522 -1.4850 2.5848 10 8 5.1879 -1.6049 2.8046 11 6 5.5912 -2.2108 4.0343 12 1 4.8190 -2.9038 4.3683 13 6 6.8821 -2.9600 3.8254 14 1 7.3907 -2.9048 2.8743 15 6 7.4138 -3.7157 4.8488 16 7 6.7422 -3.8716 5.9687 17 14 9.0882 -4.5183 4.6443 18 1 10.1332 -3.6387 5.2268 19 1 9.0979 -5.8283 5.3436 20 1 9.3646 -4.7260 3.2002 21 6 5.7965 -1.1265 5.0940 22 17 4.2164 -0.3408 5.4638 23 6 3.3903 -0.8358 1.4488 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2494 33 1 0.0716 -1.1374 1.9674 34 1 0.8865 -2.2980 3.9788 35 1 3.3053 -2.5256 4.3757 36 1 7.1161 -4.4035 6.6885 37 1 6.1996 -1.5767 6.0011 38 1 6.4950 -0.3788 4.7181 39 1 4.0922 -0.4253 0.7379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225245320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = -45.232190 kcal Electronic energy + Delta-G solvation = -20291.950012 eV Core-core repulsion = 17224.904707 eV Total energy + Delta-G solvation = -3067.045306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72695 -37.93612 -35.40450 -34.79142 -33.36780 -30.48672 -29.28248 -28.83570 -27.15145 -27.00280 -25.30000 -23.11519 -21.70799 -20.90541 -18.68855 -17.35448 -16.62163 -15.63669 -15.07104 -14.66381 -14.63559 -14.34209 -14.05494 -13.78132 -13.20560 -13.08766 -12.86986 -12.44246 -12.18242 -12.10185 -11.90696 -11.64361 -11.57957 -11.28766 -11.21864 -11.10775 -10.98397 -10.83185 -10.64251 -10.51023 -10.32649 -10.04650 -9.60925 -9.38729 -9.17082 -8.66221 -8.18490 -7.26867 -6.43425 -4.49872 1.93812 2.13291 3.11980 3.20898 3.24883 3.36188 4.05556 4.35459 4.44441 4.82130 4.92540 4.96626 5.10647 5.43228 5.51008 5.61636 5.66849 5.68430 5.82900 5.84387 5.92081 5.95318 6.01488 6.07639 6.13568 6.14809 6.26433 6.31240 6.39861 6.42851 6.61679 6.69149 6.95464 7.06799 7.13179 7.21845 7.45366 7.56442 7.76959 8.38439 8.71865 9.17693 10.64720 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.004808 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.285728 B = 5822.381687 C = 6345.174199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.044 4.044 6 C -0.177 4.177 7 C -0.085 4.085 8 C -0.194 4.194 9 C 0.158 3.842 10 O -0.313 6.313 11 C 0.204 3.796 12 H 0.057 0.943 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.913 3.087 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.031 4.031 22 Cl -0.235 7.235 23 C -0.164 4.164 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 5.981 -7.576 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.044 4.044 6 C -0.196 4.196 7 C -0.103 4.103 8 C -0.212 4.212 9 C 0.111 3.889 10 O -0.226 6.226 11 C 0.149 3.851 12 H 0.074 0.926 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.739 3.261 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.093 4.093 22 Cl -0.210 7.210 23 C -0.183 4.183 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.916 6.000 -7.473 13.090 hybrid contribution 0.779 -0.490 0.455 1.026 sum -8.137 5.510 -7.018 12.076 Atomic orbital electron populations 1.21930 0.94532 1.01818 1.01457 1.19434 0.95276 0.94964 0.92951 1.21880 1.01485 0.94730 1.01372 1.21883 1.01501 1.00172 0.95931 1.19351 0.92357 0.97511 0.95165 1.20823 0.98882 1.03823 0.96036 1.20812 0.94868 0.97962 0.96696 1.21496 0.93510 1.04701 1.01513 1.19071 0.84250 0.92417 0.93135 1.86116 1.18194 1.76058 1.42249 1.20495 0.97453 0.89296 0.77861 0.92572 1.20990 1.06162 1.28511 1.00396 0.90631 1.24988 0.98604 0.95384 0.94892 1.69915 1.37516 1.39264 1.05500 0.86222 0.82471 0.78620 0.78778 1.20202 1.20770 1.19345 1.25645 0.82982 0.96781 1.03927 1.98650 1.41230 1.84917 1.96162 1.20086 0.94813 1.05282 0.98121 0.92351 0.92859 0.92337 0.92236 0.92816 0.92567 0.92550 0.92809 0.92217 0.86642 0.86912 0.84712 0.91912 0.86443 0.90582 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.13 37.15 0.26 -1.20 16 2 C -0.03 -0.32 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 4 C -0.14 -1.58 8.29 37.16 0.31 -1.27 16 5 C -0.04 -0.68 4.76 -104.65 -0.50 -1.18 16 6 C -0.18 -2.76 8.97 -39.56 -0.36 -3.12 16 7 C -0.09 -1.46 10.04 -39.60 -0.40 -1.86 16 8 C -0.19 -3.88 6.98 -39.43 -0.28 -4.15 16 9 C 0.16 3.31 5.96 -39.22 -0.23 3.07 16 10 O -0.31 -7.36 9.74 -19.42 -0.19 -7.55 16 11 C 0.20 4.99 2.07 -27.88 -0.06 4.93 16 12 H 0.06 1.47 5.41 -51.93 -0.28 1.18 16 13 C -0.52 -13.69 8.82 -34.44 -0.30 -13.99 16 14 H 0.08 2.00 7.82 -52.49 -0.41 1.59 16 15 C 0.07 1.67 5.22 -17.82 -0.09 1.57 16 16 N -0.89 -23.22 11.95 55.43 0.66 -22.56 16 17 Si 0.91 19.92 29.54 -169.99 -5.02 14.90 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C -0.03 -0.69 6.22 37.16 0.23 -0.46 16 22 Cl -0.24 -4.89 25.50 -51.86 -1.32 -6.21 16 23 C -0.16 -2.98 8.65 -39.43 -0.34 -3.32 16 24 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 27 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 33 H 0.12 1.51 5.89 -52.49 -0.31 1.20 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.14 2.91 5.08 -52.49 -0.27 2.65 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.12 2.83 6.60 -51.93 -0.34 2.49 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.12 2.04 7.10 -52.48 -0.37 1.67 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -26.26 323.21 -8.20 -34.46 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.62 Total: 4.81 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.58 Total: -22.71 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.66 Total: -22.56 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.19 Total: -7.55 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: -4.89 SS G_CDS: -1.32 Total: -6.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.26 -8.20 -34.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225245320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.775 kcal (2) G-P(sol) polarization free energy of solvation -26.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds