Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 C 1.53004 * 109.47342 * 239.99741 * 2 1 3 5 5 C 1.50700 * 109.47418 * 119.99803 * 2 1 3 6 6 C 1.38294 * 119.96865 * 0.02562 * 5 2 1 7 7 C 1.38241 * 120.11111 * 180.02562 * 6 5 2 8 8 C 1.38172 * 120.05576 * 359.97057 * 7 6 5 9 9 C 1.38702 * 119.94299 * 0.27942 * 8 7 6 10 10 O 1.35899 * 120.05451 * 179.72590 * 9 8 7 11 11 C 1.42897 * 117.00027 * 355.94738 * 10 9 8 12 12 H 1.09000 * 109.47039 * 27.95748 * 11 10 9 13 13 C 1.50708 * 109.46685 * 147.94948 * 11 10 9 14 14 H 1.07992 * 120.00396 * 5.08843 * 13 11 10 15 15 C 1.37879 * 119.99454 * 185.08500 * 13 11 10 16 16 N 1.31515 * 120.00471 * 5.53692 * 15 13 11 17 17 Si 1.86800 * 119.99588 * 185.52754 * 15 13 11 18 18 H 1.48500 * 109.47055 * 95.00474 * 17 15 13 19 19 H 1.48502 * 109.47266 * 214.99654 * 17 15 13 20 20 H 1.48491 * 109.47495 * 335.00209 * 17 15 13 21 21 C 1.52997 * 109.47544 * 267.95032 * 11 10 9 22 22 Cl 1.80299 * 109.47023 * 65.63201 * 21 11 10 23 23 C 1.38119 * 119.97768 * 180.02562 * 5 2 1 24 24 H 1.09002 * 109.47467 * 300.00120 * 1 2 3 25 25 H 1.09006 * 109.47627 * 60.00295 * 1 2 3 26 26 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46651 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46815 * 299.99695 * 3 2 1 29 29 H 1.08996 * 109.47405 * 59.99903 * 3 2 1 30 30 H 1.08996 * 109.47066 * 300.00400 * 4 2 1 31 31 H 1.09006 * 109.46718 * 60.00235 * 4 2 1 32 32 H 1.08995 * 109.47182 * 179.97438 * 4 2 1 33 33 H 1.08000 * 119.93972 * 0.02562 * 6 5 2 34 34 H 1.07997 * 119.97194 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.02548 * 180.02562 * 8 7 6 36 36 H 0.96999 * 120.00500 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47098 * 185.63343 * 21 11 10 38 38 H 1.09003 * 109.46714 * 305.63348 * 21 11 10 39 39 H 1.08003 * 120.02619 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1331 -1.2361 2.1401 7 6 1.5907 -1.8879 3.2701 8 6 2.9483 -2.0160 3.4930 9 6 3.8522 -1.4850 2.5848 10 8 5.1879 -1.6049 2.8046 11 6 5.5912 -2.2108 4.0343 12 1 4.8190 -2.9038 4.3683 13 6 6.8821 -2.9600 3.8254 14 1 7.3907 -2.9048 2.8743 15 6 7.4138 -3.7157 4.8488 16 7 6.7422 -3.8716 5.9687 17 14 9.0882 -4.5183 4.6443 18 1 10.1332 -3.6387 5.2268 19 1 9.0979 -5.8283 5.3436 20 1 9.3646 -4.7260 3.2002 21 6 5.7965 -1.1265 5.0940 22 17 4.2164 -0.3408 5.4638 23 6 3.3903 -0.8358 1.4488 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7209 -1.2494 33 1 0.0716 -1.1374 1.9674 34 1 0.8865 -2.2980 3.9788 35 1 3.3053 -2.5256 4.3757 36 1 7.1161 -4.4035 6.6885 37 1 6.1996 -1.5767 6.0011 38 1 6.4950 -0.3788 4.7181 39 1 4.0922 -0.4253 0.7379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225245320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = -56.660774 kcal Electronic energy + Delta-G solvation = -20292.445593 eV Core-core repulsion = 17224.904707 eV Total energy + Delta-G solvation = -3067.540886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15954 -39.37839 -36.82127 -36.41989 -35.26768 -32.09986 -30.81029 -30.26525 -28.05106 -27.97489 -27.25846 -24.62059 -23.17287 -22.41155 -20.02281 -19.03354 -18.28032 -17.24506 -16.58885 -16.28790 -16.12580 -15.75298 -15.19111 -15.03606 -14.74598 -14.45048 -14.29451 -14.00290 -13.70103 -13.39106 -13.07769 -13.03542 -12.89246 -12.76443 -12.54956 -12.49910 -12.40747 -12.31317 -12.04042 -11.78200 -11.56667 -11.45962 -11.29280 -11.12935 -10.94067 -10.57241 -9.56759 -8.81224 -8.39027 -6.54085 0.54179 0.70392 1.37630 1.41707 1.52498 1.56597 2.27205 2.74506 2.94603 2.98998 3.74804 3.95762 4.13496 4.19032 4.21686 4.34101 4.39179 4.44192 4.53491 4.58774 4.72483 4.83851 4.86741 4.92929 4.96300 5.07835 5.09020 5.11497 5.20415 5.25390 5.34881 5.43024 5.49679 5.51534 5.65674 5.68738 5.81876 5.85769 6.07795 6.49725 6.88092 7.19078 8.68849 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.004808 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.285728 B = 5822.381687 C = 6345.174199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.037 4.037 6 C -0.168 4.168 7 C -0.088 4.088 8 C -0.211 4.211 9 C 0.124 3.876 10 O -0.333 6.333 11 C 0.211 3.789 12 H 0.034 0.966 13 C -0.550 4.550 14 H 0.064 0.936 15 C 0.028 3.972 16 N -0.908 5.908 17 Si 0.975 3.025 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.269 1.269 21 C -0.021 4.021 22 Cl -0.216 7.216 23 C -0.170 4.170 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.275 0.725 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 6.687 -8.847 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.037 4.037 6 C -0.185 4.185 7 C -0.106 4.106 8 C -0.230 4.230 9 C 0.078 3.922 10 O -0.247 6.247 11 C 0.156 3.844 12 H 0.051 0.949 13 C -0.588 4.588 14 H 0.082 0.918 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.799 3.201 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.194 1.194 21 C -0.084 4.084 22 Cl -0.190 7.190 23 C -0.189 4.189 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.437 6.717 -8.747 15.184 hybrid contribution 1.083 -0.658 0.786 1.491 sum -9.354 6.060 -7.961 13.696 Atomic orbital electron populations 1.21930 0.92520 1.02443 1.02706 1.19554 0.96858 0.94903 0.91399 1.21880 1.00759 0.94383 1.02379 1.21883 1.00763 1.00246 0.96535 1.19817 0.91217 0.96355 0.96322 1.21242 1.00613 1.01899 0.94781 1.21118 0.93904 0.97758 0.97799 1.21378 0.94856 1.05763 1.00995 1.19407 0.83262 0.94656 0.94844 1.86047 1.20190 1.76662 1.41826 1.20221 0.96115 0.89362 0.78723 0.94859 1.21212 1.07204 1.29933 1.00413 0.91751 1.25735 1.01756 0.95509 0.94358 1.69998 1.38867 1.39573 1.06039 0.85271 0.78336 0.77901 0.78632 1.19206 1.20108 1.19351 1.25286 0.83870 0.96539 1.02682 1.98640 1.39946 1.84419 1.96036 1.20283 0.96265 1.05060 0.97282 0.92116 0.90741 0.92000 0.93481 0.90349 0.93034 0.92895 0.90356 0.93483 0.83260 0.84703 0.87127 0.91543 0.87975 0.90245 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.13 71.98 0.51 -1.82 16 2 C -0.03 -0.59 0.85 -52.93 -0.05 -0.64 16 3 C -0.14 -2.82 8.29 71.98 0.60 -2.22 16 4 C -0.14 -2.80 8.29 71.98 0.60 -2.21 16 5 C -0.04 -1.09 4.76 -19.88 -0.09 -1.19 16 6 C -0.17 -4.81 8.97 22.28 0.20 -4.61 16 7 C -0.09 -2.92 10.04 22.25 0.22 -2.69 16 8 C -0.21 -8.66 6.98 22.37 0.16 -8.51 16 9 C 0.12 5.34 5.96 22.50 0.13 5.48 16 10 O -0.33 -16.40 9.74 -92.42 -0.90 -17.30 16 11 C 0.21 10.82 2.07 29.85 0.06 10.88 16 12 H 0.03 1.86 5.41 -2.39 -0.01 1.85 16 13 C -0.55 -29.88 8.82 25.60 0.23 -29.66 16 14 H 0.06 3.54 7.82 -2.91 -0.02 3.52 16 15 C 0.03 1.47 5.22 84.66 0.44 1.91 16 16 N -0.91 -48.66 11.95 21.45 0.26 -48.41 16 17 Si 0.98 41.14 29.54 68.60 2.03 43.17 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 C -0.02 -0.97 6.22 71.98 0.45 -0.53 16 22 Cl -0.22 -9.13 25.50 -2.72 -0.07 -9.20 16 23 C -0.17 -6.19 8.65 22.37 0.19 -6.00 16 24 H 0.06 1.01 7.51 -2.39 -0.02 0.99 16 25 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.06 1.01 7.51 -2.38 -0.02 1.00 16 27 H 0.05 1.08 7.39 -2.38 -0.02 1.06 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 33 H 0.15 3.29 5.89 -2.91 -0.02 3.27 16 34 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.11 5.04 5.08 -2.91 -0.01 5.03 16 36 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.10 5.11 6.60 -2.39 -0.02 5.09 16 38 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 39 H 0.12 4.23 7.10 -2.91 -0.02 4.21 16 Total: -1.00 -57.77 323.21 6.00 -51.77 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.04 Total: 21.78 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 3.65 Total: -41.80 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.26 Total: -48.41 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.90 Total: -17.30 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: -9.13 SS G_CDS: -0.07 Total: -9.20 kcal Total: -57.77 6.00 -51.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225245320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.894 kcal (2) G-P(sol) polarization free energy of solvation -57.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds