Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 C 1.53001 * 109.47411 * 239.99771 * 2 1 3 5 5 C 1.50704 * 109.46923 * 119.99939 * 2 1 3 6 6 C 1.38267 * 119.94277 * 60.00604 * 5 2 1 7 7 C 1.38145 * 120.05497 * 180.02562 * 6 5 2 8 8 C 1.38737 * 119.94258 * 359.97438 * 7 6 5 9 9 O 1.35898 * 120.05134 * 180.02562 * 8 7 6 10 10 C 1.42908 * 116.99673 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46958 * 24.47746 * 10 9 8 12 12 C 1.50692 * 109.47183 * 144.48189 * 10 9 8 13 13 H 1.08003 * 120.00419 * 5.67264 * 12 10 9 14 14 C 1.37875 * 120.00116 * 185.39638 * 12 10 9 15 15 N 1.31520 * 119.99989 * 356.17436 * 14 12 10 16 16 Si 1.86801 * 120.00247 * 176.17013 * 14 12 10 17 17 H 1.48504 * 109.47056 * 94.99931 * 16 14 12 18 18 H 1.48499 * 109.47400 * 214.99995 * 16 14 12 19 19 H 1.48501 * 109.47278 * 334.99998 * 16 14 12 20 20 C 1.53001 * 109.46665 * 264.47923 * 10 9 8 21 21 Cl 1.80296 * 109.47372 * 65.50198 * 20 10 9 22 22 C 1.38732 * 119.89073 * 0.27943 * 8 7 6 23 23 C 1.38148 * 119.94136 * 359.46784 * 22 8 7 24 24 H 1.08994 * 109.47576 * 299.99945 * 1 2 3 25 25 H 1.08996 * 109.46882 * 60.00146 * 1 2 3 26 26 H 1.08999 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47282 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47101 * 300.00267 * 3 2 1 29 29 H 1.09004 * 109.46985 * 60.00084 * 3 2 1 30 30 H 1.08997 * 109.47519 * 300.00487 * 4 2 1 31 31 H 1.09009 * 109.46758 * 60.00021 * 4 2 1 32 32 H 1.09000 * 109.47299 * 179.97438 * 4 2 1 33 33 H 1.07999 * 119.97013 * 359.97046 * 6 5 2 34 34 H 1.08001 * 120.03029 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99785 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.46879 * 185.50218 * 20 10 9 37 37 H 1.08999 * 109.47335 * 305.49911 * 20 10 9 38 38 H 1.07994 * 120.02806 * 179.72304 * 22 8 7 39 39 H 1.07998 * 119.97275 * 180.23588 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6976 -2.0342 1.4481 7 6 2.1563 -2.6875 2.5755 8 6 2.9539 -2.0144 3.4896 9 8 3.4068 -2.6550 4.5992 10 6 4.2227 -1.8996 5.4969 11 1 4.0046 -0.8380 5.3802 12 6 3.9316 -2.3194 6.9145 13 1 3.2659 -3.1480 7.1065 14 6 4.5194 -1.6494 7.9665 15 7 5.3918 -0.6936 7.7321 16 14 4.0765 -2.0992 9.7246 17 1 5.0685 -3.0705 10.2519 18 1 4.0863 -0.8757 10.5661 19 1 2.7229 -2.7091 9.7536 20 6 5.6982 -2.1547 5.1823 21 17 6.0847 -1.5053 3.5453 22 6 3.2839 -0.6846 3.2717 23 6 2.8270 -0.0373 2.1400 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7209 -1.2494 33 1 1.0763 -2.5576 0.7364 34 1 1.8943 -3.7214 2.7453 35 1 5.8050 -0.2220 8.4722 36 1 6.3197 -1.6570 5.9267 37 1 5.8941 -3.2267 5.2034 38 1 3.9009 -0.1572 3.9840 39 1 3.0868 0.9968 1.9679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225257075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = -45.312089 kcal Electronic energy + Delta-G solvation = -20210.724210 eV Core-core repulsion = 17143.675439 eV Total energy + Delta-G solvation = -3067.048770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71283 -37.98422 -35.35118 -34.70290 -33.32746 -30.72298 -29.67651 -28.11050 -27.23471 -27.17625 -25.31873 -22.82538 -22.10057 -20.57120 -18.81407 -17.54952 -16.79382 -15.53971 -15.08733 -14.61694 -14.47717 -14.27273 -14.04977 -13.68308 -13.29013 -12.99746 -12.79052 -12.47251 -12.33605 -12.06785 -11.94856 -11.72368 -11.63970 -11.52251 -11.17120 -11.05047 -10.95501 -10.81887 -10.57879 -10.38787 -10.34359 -10.07252 -9.56848 -9.38930 -9.08851 -8.68489 -8.34107 -7.21069 -6.43792 -4.51037 1.96338 2.07927 3.12176 3.20569 3.25107 3.40351 4.06435 4.36065 4.47754 4.82782 4.91157 4.92773 5.12149 5.45130 5.47382 5.55342 5.62344 5.65343 5.81894 5.87953 5.92143 5.94420 6.05664 6.11000 6.12813 6.14479 6.25241 6.32099 6.39337 6.44497 6.60652 6.71346 6.95974 7.03301 7.14082 7.20975 7.44720 7.56110 7.77514 8.37438 8.71123 9.17380 10.63768 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.004585 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.910618 B = 6105.502252 C = 6457.701103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.021 4.021 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.169 4.169 8 C 0.154 3.846 9 O -0.313 6.313 10 C 0.204 3.796 11 H 0.055 0.945 12 C -0.523 4.523 13 H 0.075 0.925 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.914 3.086 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.031 4.031 21 Cl -0.240 7.240 22 C -0.191 4.191 23 C -0.084 4.084 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.271 0.729 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 1.636 -12.035 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.131 4.131 6 C -0.102 4.102 7 C -0.188 4.188 8 C 0.107 3.893 9 O -0.226 6.226 10 C 0.149 3.851 11 H 0.072 0.928 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.741 3.259 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.094 4.094 21 Cl -0.214 7.214 22 C -0.209 4.209 23 C -0.102 4.102 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.005 1.618 -11.971 13.076 hybrid contribution 0.154 0.013 0.963 0.976 sum -4.851 1.632 -11.008 12.139 Atomic orbital electron populations 1.21880 0.94388 1.01762 1.01341 1.19331 0.95099 0.94690 0.92946 1.21944 1.01239 0.95357 1.01434 1.21881 1.01246 1.00060 0.96180 1.19444 1.02137 0.94481 0.97059 1.20532 0.99318 0.93963 0.96337 1.20314 1.02734 1.00428 0.95300 1.19137 0.91933 0.90857 0.87339 1.86115 1.64618 1.41554 1.30357 1.20521 0.83855 0.93539 0.87148 0.92797 1.21040 1.29194 1.18081 0.87746 0.90641 1.24987 0.94294 0.94363 1.00252 1.69850 1.26876 1.22745 1.32963 0.86193 0.79261 0.78159 0.82297 1.20250 1.20701 1.19335 1.25731 1.02041 1.00284 0.81352 1.98644 1.95736 1.89578 1.37455 1.21508 1.04409 0.94934 1.00089 1.20850 0.96615 0.99309 0.93446 0.92576 0.92995 0.92625 0.92340 0.92948 0.92325 0.92632 0.93004 0.92610 0.86706 0.86189 0.91866 0.85550 0.90757 0.84640 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.29 37.16 0.31 -1.16 16 2 C -0.02 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.59 7.13 37.16 0.27 -1.32 16 4 C -0.14 -1.49 8.29 37.16 0.31 -1.18 16 5 C -0.13 -1.99 4.76 -104.60 -0.50 -2.49 16 6 C -0.08 -1.30 8.70 -39.60 -0.34 -1.64 16 7 C -0.17 -3.06 9.99 -39.43 -0.39 -3.45 16 8 C 0.15 3.22 6.09 -39.21 -0.24 2.98 16 9 O -0.31 -7.37 9.71 -19.42 -0.19 -7.56 16 10 C 0.20 5.00 2.10 -27.89 -0.06 4.94 16 11 H 0.05 1.40 5.38 -51.93 -0.28 1.12 16 12 C -0.52 -13.69 8.82 -34.44 -0.30 -13.99 16 13 H 0.08 1.99 7.82 -52.48 -0.41 1.58 16 14 C 0.06 1.65 5.34 -17.82 -0.10 1.55 16 15 N -0.89 -23.14 11.56 55.43 0.64 -22.50 16 16 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 C -0.03 -0.72 6.21 37.16 0.23 -0.49 16 21 Cl -0.24 -5.00 25.75 -51.86 -1.34 -6.34 16 22 C -0.19 -3.79 7.15 -39.43 -0.28 -4.07 16 23 C -0.08 -1.43 8.97 -39.60 -0.36 -1.78 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 27 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 30 H 0.05 0.59 7.38 -51.93 -0.38 0.20 16 31 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.48 7.09 -52.49 -0.37 1.11 16 34 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.13 3.08 6.26 -51.93 -0.33 2.76 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.14 2.91 5.02 -52.49 -0.26 2.64 16 39 H 0.12 1.78 5.88 -52.49 -0.31 1.47 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -26.10 323.03 -8.23 -34.33 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.60 Total: 4.78 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.59 Total: -22.48 kcal Atomic # 7 Polarization: -23.14 SS G_CDS: 0.64 Total: -22.50 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.19 Total: -7.56 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 17 Polarization: -5.00 SS G_CDS: -1.34 Total: -6.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.10 -8.23 -34.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.982 kcal (2) G-P(sol) polarization free energy of solvation -26.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds