Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 C 1.53001 * 109.47411 * 239.99771 * 2 1 3 5 5 C 1.50704 * 109.46923 * 119.99939 * 2 1 3 6 6 C 1.38267 * 119.94277 * 60.00604 * 5 2 1 7 7 C 1.38145 * 120.05497 * 180.02562 * 6 5 2 8 8 C 1.38737 * 119.94258 * 359.97438 * 7 6 5 9 9 O 1.35898 * 120.05134 * 180.02562 * 8 7 6 10 10 C 1.42908 * 116.99673 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46958 * 24.47746 * 10 9 8 12 12 C 1.50692 * 109.47183 * 144.48189 * 10 9 8 13 13 H 1.08003 * 120.00419 * 5.67264 * 12 10 9 14 14 C 1.37875 * 120.00116 * 185.39638 * 12 10 9 15 15 N 1.31520 * 119.99989 * 356.17436 * 14 12 10 16 16 Si 1.86801 * 120.00247 * 176.17013 * 14 12 10 17 17 H 1.48504 * 109.47056 * 94.99931 * 16 14 12 18 18 H 1.48499 * 109.47400 * 214.99995 * 16 14 12 19 19 H 1.48501 * 109.47278 * 334.99998 * 16 14 12 20 20 C 1.53001 * 109.46665 * 264.47923 * 10 9 8 21 21 Cl 1.80296 * 109.47372 * 65.50198 * 20 10 9 22 22 C 1.38732 * 119.89073 * 0.27943 * 8 7 6 23 23 C 1.38148 * 119.94136 * 359.46784 * 22 8 7 24 24 H 1.08994 * 109.47576 * 299.99945 * 1 2 3 25 25 H 1.08996 * 109.46882 * 60.00146 * 1 2 3 26 26 H 1.08999 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47282 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47101 * 300.00267 * 3 2 1 29 29 H 1.09004 * 109.46985 * 60.00084 * 3 2 1 30 30 H 1.08997 * 109.47519 * 300.00487 * 4 2 1 31 31 H 1.09009 * 109.46758 * 60.00021 * 4 2 1 32 32 H 1.09000 * 109.47299 * 179.97438 * 4 2 1 33 33 H 1.07999 * 119.97013 * 359.97046 * 6 5 2 34 34 H 1.08001 * 120.03029 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99785 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.46879 * 185.50218 * 20 10 9 37 37 H 1.08999 * 109.47335 * 305.49911 * 20 10 9 38 38 H 1.07994 * 120.02806 * 179.72304 * 22 8 7 39 39 H 1.07998 * 119.97275 * 180.23588 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6976 -2.0342 1.4481 7 6 2.1563 -2.6875 2.5755 8 6 2.9539 -2.0144 3.4896 9 8 3.4068 -2.6550 4.5992 10 6 4.2227 -1.8996 5.4969 11 1 4.0046 -0.8380 5.3802 12 6 3.9316 -2.3194 6.9145 13 1 3.2659 -3.1480 7.1065 14 6 4.5194 -1.6494 7.9665 15 7 5.3918 -0.6936 7.7321 16 14 4.0765 -2.0992 9.7246 17 1 5.0685 -3.0705 10.2519 18 1 4.0863 -0.8757 10.5661 19 1 2.7229 -2.7091 9.7536 20 6 5.6982 -2.1547 5.1823 21 17 6.0847 -1.5053 3.5453 22 6 3.2839 -0.6846 3.2717 23 6 2.8270 -0.0373 2.1400 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7209 -1.2494 33 1 1.0763 -2.5576 0.7364 34 1 1.8943 -3.7214 2.7453 35 1 5.8050 -0.2220 8.4722 36 1 6.3197 -1.6570 5.9267 37 1 5.8941 -3.2267 5.2034 38 1 3.9009 -0.1572 3.9840 39 1 3.0868 0.9968 1.9679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225257075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = -56.528915 kcal Electronic energy + Delta-G solvation = -20211.210608 eV Core-core repulsion = 17143.675439 eV Total energy + Delta-G solvation = -3067.535168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13586 -39.41080 -36.82529 -36.29691 -35.20305 -32.16275 -31.40770 -29.53841 -28.17884 -28.00298 -27.27907 -24.40252 -23.44069 -22.16148 -19.97853 -19.17986 -18.65454 -17.11733 -16.42770 -16.23166 -16.09454 -15.69207 -15.11707 -15.02605 -14.74972 -14.42010 -14.15887 -13.92660 -13.62449 -13.55650 -13.34168 -13.05594 -12.93795 -12.71716 -12.70751 -12.48786 -12.34523 -12.24738 -11.94191 -11.73125 -11.52286 -11.45407 -11.28854 -11.10576 -10.87067 -10.57344 -9.74511 -8.71835 -8.38416 -6.54509 0.56184 0.67481 1.38604 1.41563 1.53080 1.59441 2.27674 2.78024 2.94322 2.98708 3.80339 3.91359 4.08945 4.21232 4.24160 4.30764 4.39646 4.48644 4.54530 4.62285 4.77513 4.86821 4.91014 4.95056 4.97204 5.07905 5.10391 5.14996 5.19454 5.23264 5.29242 5.45336 5.51723 5.54267 5.62775 5.66745 5.84648 5.86687 6.07449 6.49329 6.88132 7.19387 8.68461 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024907 B = 0.004585 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.910618 B = 6105.502252 C = 6457.701103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.077 4.077 7 C -0.174 4.174 8 C 0.116 3.884 9 O -0.333 6.333 10 C 0.212 3.788 11 H 0.033 0.967 12 C -0.551 4.551 13 H 0.065 0.935 14 C 0.027 3.973 15 N -0.908 5.908 16 Si 0.977 3.023 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.269 1.269 20 C -0.022 4.022 21 Cl -0.221 7.221 22 C -0.204 4.204 23 C -0.091 4.091 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.276 0.724 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 1.764 -13.772 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 C -0.201 4.201 4 C -0.192 4.192 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.192 4.192 8 C 0.070 3.930 9 O -0.247 6.247 10 C 0.156 3.844 11 H 0.050 0.950 12 C -0.588 4.588 13 H 0.083 0.917 14 C -0.174 4.174 15 N -0.545 5.545 16 Si 0.800 3.200 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.194 1.194 20 C -0.085 4.085 21 Cl -0.195 7.195 22 C -0.223 4.223 23 C -0.108 4.108 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.241 1.751 -13.732 15.185 hybrid contribution 0.488 0.039 1.323 1.410 sum -5.753 1.790 -12.410 13.795 Atomic orbital electron populations 1.21873 0.92965 1.02363 1.02024 1.19444 0.96149 0.94882 0.91694 1.21957 1.00841 0.94992 1.02312 1.21874 1.00585 1.00518 0.96243 1.19908 0.99995 0.94441 0.97451 1.20911 0.98677 0.94123 0.95739 1.20591 1.02128 1.01031 0.95479 1.19472 0.94165 0.91710 0.87623 1.86043 1.65267 1.41946 1.31460 1.20243 0.84725 0.92372 0.87028 0.94963 1.21264 1.29856 1.18432 0.89264 0.91714 1.25739 0.93859 0.94047 1.03779 1.69935 1.27225 1.23224 1.34164 0.85246 0.78964 0.78141 0.77627 1.19308 1.20007 1.19385 1.25378 1.00980 1.00093 0.82036 1.98635 1.95583 1.89396 1.35885 1.21385 1.05194 0.94831 1.00886 1.21084 0.96783 1.00119 0.92864 0.93499 0.90809 0.92100 0.93043 0.90749 0.92854 0.92099 0.90799 0.93694 0.83266 0.85283 0.91497 0.87147 0.90590 0.87087 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.29 71.98 0.60 -1.82 16 2 C -0.02 -0.45 0.85 -52.93 -0.05 -0.50 16 3 C -0.14 -2.82 7.13 71.98 0.51 -2.30 16 4 C -0.14 -2.45 8.29 71.98 0.60 -1.85 16 5 C -0.12 -3.35 4.76 -19.85 -0.09 -3.44 16 6 C -0.08 -2.21 8.70 22.25 0.19 -2.02 16 7 C -0.17 -6.19 9.99 22.37 0.22 -5.96 16 8 C 0.12 4.96 6.09 22.51 0.14 5.10 16 9 O -0.33 -16.33 9.71 -92.40 -0.90 -17.22 16 10 C 0.21 10.84 2.10 29.85 0.06 10.90 16 11 H 0.03 1.79 5.38 -2.39 -0.01 1.78 16 12 C -0.55 -29.87 8.82 25.60 0.23 -29.64 16 13 H 0.06 3.55 7.82 -2.91 -0.02 3.53 16 14 C 0.03 1.42 5.34 84.65 0.45 1.87 16 15 N -0.91 -48.40 11.56 21.45 0.25 -48.15 16 16 Si 0.98 41.14 29.54 68.60 2.03 43.17 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.02 -1.04 6.21 71.98 0.45 -0.59 16 21 Cl -0.22 -9.40 25.75 -2.72 -0.07 -9.47 16 22 C -0.20 -8.36 7.15 22.37 0.16 -8.20 16 23 C -0.09 -3.04 8.97 22.26 0.20 -2.84 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.03 7.38 -2.39 -0.02 1.01 16 27 H 0.05 1.07 7.51 -2.39 -0.02 1.06 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.09 7.51 -2.39 -0.02 1.08 16 30 H 0.06 1.04 7.38 -2.39 -0.02 1.03 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.15 3.27 7.09 -2.91 -0.02 3.25 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.11 5.60 6.26 -2.38 -0.01 5.58 16 37 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.11 5.05 5.02 -2.91 -0.01 5.04 16 39 H 0.13 3.94 5.88 -2.91 -0.02 3.93 16 Total: -1.00 -57.28 323.03 6.01 -51.27 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.04 Total: 21.71 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.67 Total: -41.30 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.25 Total: -48.15 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.90 Total: -17.22 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: -9.40 SS G_CDS: -0.07 Total: -9.47 kcal Total: -57.28 6.01 -51.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.257 kcal (2) G-P(sol) polarization free energy of solvation -57.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds