Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47367 * 2 1 4 4 H 1.09002 * 109.46606 * 54.99756 * 3 2 1 5 5 C 1.53000 * 109.46835 * 295.00250 * 3 2 1 6 6 C 1.50692 * 109.46875 * 175.00054 * 3 2 1 7 7 C 1.38272 * 119.94364 * 239.99262 * 6 3 2 8 8 C 1.38142 * 120.05554 * 180.02562 * 7 6 3 9 9 C 1.38732 * 119.94772 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.05711 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99818 * 176.31040 * 10 9 8 12 12 H 1.08999 * 109.46976 * 27.14972 * 11 10 9 13 13 C 1.50703 * 109.47045 * 147.14724 * 11 10 9 14 14 H 1.08000 * 119.99569 * 0.02562 * 13 11 10 15 15 C 1.37872 * 120.00187 * 179.97438 * 13 11 10 16 16 N 1.31520 * 119.99868 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00309 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46559 * 60.00251 * 17 15 13 19 19 H 1.48494 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46996 * 300.00570 * 17 15 13 21 21 C 1.52997 * 109.47092 * 267.14916 * 11 10 9 22 22 Cl 1.80304 * 109.47131 * 65.00143 * 21 11 10 23 23 C 1.38738 * 119.88624 * 0.27198 * 9 8 7 24 24 C 1.38152 * 119.94228 * 359.47510 * 23 9 8 25 25 H 1.09000 * 109.46886 * 300.00020 * 1 2 3 26 26 H 1.08997 * 109.47162 * 59.99914 * 1 2 3 27 27 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46886 * 239.99980 * 2 1 3 29 29 H 1.08997 * 109.47162 * 120.00086 * 2 1 3 30 30 H 1.08997 * 109.47219 * 59.99600 * 5 3 2 31 31 H 1.08998 * 109.47108 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.46838 * 300.00083 * 5 3 2 33 33 H 1.07999 * 119.96596 * 359.97438 * 7 6 3 34 34 H 1.08000 * 120.02839 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99703 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.46840 * 184.99998 * 21 11 10 37 37 H 1.09000 * 109.47474 * 304.99880 * 21 11 10 38 38 H 1.07995 * 120.02910 * 179.72143 * 23 9 8 39 39 H 1.07995 * 119.96822 * 180.23125 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1238 7 6 4.1453 2.0741 1.1967 8 6 5.5219 2.0775 1.3122 9 6 6.2991 1.4487 0.3504 10 8 7.6535 1.4503 0.4621 11 6 8.3863 0.7150 -0.5201 12 1 7.8105 0.6699 -1.4445 13 6 9.7030 1.3999 -0.7813 14 1 9.9551 2.3058 -0.2501 15 6 10.5861 0.8696 -1.6976 16 7 10.2792 -0.2339 -2.3441 17 14 12.2186 1.7181 -2.0209 18 1 13.0025 1.7795 -0.7612 19 1 12.9800 0.9542 -3.0416 20 1 11.9706 3.0957 -2.5173 21 6 8.6422 -0.7041 -0.0088 22 17 7.0718 -1.5730 0.1640 23 6 5.6916 0.8227 -0.7285 24 6 4.3143 0.8176 -0.8367 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5490 2.1252 -1.3969 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5874 -2.1492 33 1 3.5398 2.5645 1.9446 34 1 5.9927 2.5699 2.1502 35 1 10.9004 -0.6068 -2.9890 36 1 9.2761 -1.2369 -0.7177 37 1 9.1399 -0.6572 0.9598 38 1 6.2946 0.3365 -1.4809 39 1 3.8408 0.3273 -1.6743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227322214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -49.712009 kcal Electronic energy + Delta-G solvation = -20003.201065 eV Core-core repulsion = 16935.961499 eV Total energy + Delta-G solvation = -3067.239565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57299 -37.72854 -35.36946 -34.72236 -33.38968 -30.62642 -30.34229 -29.37618 -27.76360 -25.34163 -24.46757 -22.86209 -22.10285 -20.35575 -19.47756 -17.52364 -16.80177 -15.56447 -15.21738 -14.80735 -14.45436 -14.40260 -14.08618 -13.60429 -13.37239 -13.22145 -12.77353 -12.64258 -12.27220 -12.06965 -11.96214 -11.85297 -11.57488 -11.52464 -11.16450 -11.00216 -10.81977 -10.72343 -10.55050 -10.43868 -10.30829 -10.10428 -9.60465 -9.38145 -9.11555 -8.66241 -8.34061 -7.20760 -6.43725 -4.51291 1.95504 2.06424 3.14129 3.19955 3.22516 3.41743 4.05422 4.34180 4.48845 4.84618 4.92779 4.93358 5.11180 5.37086 5.45869 5.50516 5.55681 5.58397 5.69668 5.89842 5.92851 5.95412 6.02630 6.05560 6.12923 6.15265 6.27632 6.32224 6.39511 6.44578 6.60504 6.72087 6.95169 7.04504 7.13240 7.20966 7.43800 7.56072 7.77354 8.37200 8.69497 9.16612 10.63367 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004301 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.568060 B = 6509.188375 C = 6813.348664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.041 4.041 4 H 0.070 0.930 5 C -0.144 4.144 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.169 4.169 9 C 0.155 3.845 10 O -0.313 6.313 11 C 0.205 3.795 12 H 0.052 0.948 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.916 3.084 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.036 4.036 22 Cl -0.240 7.240 23 C -0.189 4.189 24 C -0.077 4.077 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 1.048 2.930 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.059 4.059 4 H 0.088 0.912 5 C -0.202 4.202 6 C -0.138 4.138 7 C -0.104 4.104 8 C -0.188 4.188 9 C 0.108 3.892 10 O -0.226 6.226 11 C 0.151 3.849 12 H 0.069 0.931 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.743 3.257 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.098 4.098 22 Cl -0.214 7.214 23 C -0.207 4.207 24 C -0.096 4.096 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.922 0.937 2.933 13.283 hybrid contribution 0.891 0.051 -0.356 0.961 sum -12.030 0.988 2.577 12.343 Atomic orbital electron populations 1.21837 0.96249 1.01278 1.01633 1.21598 0.95120 0.96374 1.02355 1.19992 0.91658 0.96003 0.98279 0.91176 1.21897 1.00476 1.00621 0.97160 1.19504 0.94499 1.02856 0.96896 1.20626 0.93468 0.99031 0.97266 1.20315 0.92939 1.05397 1.00136 1.19125 0.84314 0.92865 0.92932 1.86123 1.13680 1.69214 1.53611 1.20504 0.91745 0.86132 0.86566 0.93107 1.20997 1.00345 1.10902 1.23761 0.90645 1.24978 0.99213 0.95063 0.94677 1.69792 1.37133 1.19819 1.25917 0.86232 0.81679 0.79513 0.78289 1.19737 1.20850 1.19717 1.25752 0.83826 0.96187 1.04058 1.98644 1.42291 1.81784 1.98678 1.21473 0.95454 1.03942 0.99862 1.20618 0.92875 0.98110 0.97958 0.92976 0.92603 0.93067 0.91903 0.91956 0.92777 0.92728 0.92581 0.86676 0.86167 0.91767 0.84944 0.90824 0.84711 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.32 5.14 -26.73 -0.14 -1.45 16 3 C -0.04 -0.49 2.56 -91.77 -0.23 -0.72 16 4 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 5 C -0.14 -1.58 8.76 37.16 0.33 -1.25 16 6 C -0.14 -2.08 4.78 -104.60 -0.50 -2.58 16 7 C -0.09 -1.33 9.66 -39.60 -0.38 -1.72 16 8 C -0.17 -3.06 9.99 -39.43 -0.39 -3.45 16 9 C 0.15 3.22 5.95 -39.21 -0.23 2.99 16 10 O -0.31 -7.37 9.73 -19.42 -0.19 -7.56 16 11 C 0.21 5.03 2.19 -27.88 -0.06 4.97 16 12 H 0.05 1.31 5.39 -51.93 -0.28 1.03 16 13 C -0.52 -13.68 8.89 -34.44 -0.31 -13.98 16 14 H 0.08 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 16 N -0.89 -23.12 11.29 55.43 0.63 -22.49 16 17 Si 0.92 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.04 -0.82 6.17 37.16 0.23 -0.59 16 22 Cl -0.24 -5.01 25.63 -51.86 -1.33 -6.34 16 23 C -0.19 -3.73 7.05 -39.43 -0.28 -4.01 16 24 C -0.08 -1.30 8.75 -39.60 -0.35 -1.65 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.48 6.56 -51.93 -0.34 0.13 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 33 H 0.12 1.47 7.94 -52.49 -0.42 1.05 16 34 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.13 3.25 5.95 -51.93 -0.31 2.94 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.14 2.87 5.14 -52.49 -0.27 2.60 16 39 H 0.11 1.69 7.15 -52.49 -0.38 1.31 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -25.95 324.78 -8.67 -34.62 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.60 Total: 4.95 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.05 Total: -22.95 kcal Atomic # 7 Polarization: -23.12 SS G_CDS: 0.63 Total: -22.49 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.19 Total: -7.56 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -1.33 Total: -6.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -25.95 -8.67 -34.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227322214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.091 kcal (2) G-P(sol) polarization free energy of solvation -25.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds