Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47367 * 2 1 4 4 H 1.09002 * 109.46606 * 54.99756 * 3 2 1 5 5 C 1.53000 * 109.46835 * 295.00250 * 3 2 1 6 6 C 1.50692 * 109.46875 * 175.00054 * 3 2 1 7 7 C 1.38272 * 119.94364 * 239.99262 * 6 3 2 8 8 C 1.38142 * 120.05554 * 180.02562 * 7 6 3 9 9 C 1.38732 * 119.94772 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.05711 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99818 * 176.31040 * 10 9 8 12 12 H 1.08999 * 109.46976 * 27.14972 * 11 10 9 13 13 C 1.50703 * 109.47045 * 147.14724 * 11 10 9 14 14 H 1.08000 * 119.99569 * 0.02562 * 13 11 10 15 15 C 1.37872 * 120.00187 * 179.97438 * 13 11 10 16 16 N 1.31520 * 119.99868 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00309 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46559 * 60.00251 * 17 15 13 19 19 H 1.48494 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46996 * 300.00570 * 17 15 13 21 21 C 1.52997 * 109.47092 * 267.14916 * 11 10 9 22 22 Cl 1.80304 * 109.47131 * 65.00143 * 21 11 10 23 23 C 1.38738 * 119.88624 * 0.27198 * 9 8 7 24 24 C 1.38152 * 119.94228 * 359.47510 * 23 9 8 25 25 H 1.09000 * 109.46886 * 300.00020 * 1 2 3 26 26 H 1.08997 * 109.47162 * 59.99914 * 1 2 3 27 27 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46886 * 239.99980 * 2 1 3 29 29 H 1.08997 * 109.47162 * 120.00086 * 2 1 3 30 30 H 1.08997 * 109.47219 * 59.99600 * 5 3 2 31 31 H 1.08998 * 109.47108 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.46838 * 300.00083 * 5 3 2 33 33 H 1.07999 * 119.96596 * 359.97438 * 7 6 3 34 34 H 1.08000 * 120.02839 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99703 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.46840 * 184.99998 * 21 11 10 37 37 H 1.09000 * 109.47474 * 304.99880 * 21 11 10 38 38 H 1.07995 * 120.02910 * 179.72143 * 23 9 8 39 39 H 1.07995 * 119.96822 * 180.23125 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1238 7 6 4.1453 2.0741 1.1967 8 6 5.5219 2.0775 1.3122 9 6 6.2991 1.4487 0.3504 10 8 7.6535 1.4503 0.4621 11 6 8.3863 0.7150 -0.5201 12 1 7.8105 0.6699 -1.4445 13 6 9.7030 1.3999 -0.7813 14 1 9.9551 2.3058 -0.2501 15 6 10.5861 0.8696 -1.6976 16 7 10.2792 -0.2339 -2.3441 17 14 12.2186 1.7181 -2.0209 18 1 13.0025 1.7795 -0.7612 19 1 12.9800 0.9542 -3.0416 20 1 11.9706 3.0957 -2.5173 21 6 8.6422 -0.7041 -0.0088 22 17 7.0718 -1.5730 0.1640 23 6 5.6916 0.8227 -0.7285 24 6 4.3143 0.8176 -0.8367 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5490 2.1252 -1.3969 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5874 -2.1492 33 1 3.5398 2.5645 1.9446 34 1 5.9927 2.5699 2.1502 35 1 10.9004 -0.6068 -2.9890 36 1 9.2761 -1.2369 -0.7177 37 1 9.1399 -0.6572 0.9598 38 1 6.2946 0.3365 -1.4809 39 1 3.8408 0.3273 -1.6743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227322214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -60.540067 kcal Electronic energy + Delta-G solvation = -20003.670604 eV Core-core repulsion = 16935.961499 eV Total energy + Delta-G solvation = -3067.709105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04679 -39.15237 -36.77625 -36.29063 -35.25795 -32.06736 -31.61193 -30.91024 -28.96234 -27.29567 -25.46135 -24.39888 -23.42442 -21.88720 -20.58414 -19.18727 -18.64629 -17.18342 -16.38613 -16.36255 -16.12209 -15.61011 -15.51739 -14.96837 -14.67981 -14.55325 -14.19342 -13.91103 -13.84453 -13.45114 -13.37206 -13.06337 -12.99844 -12.79157 -12.70166 -12.47137 -12.35674 -12.15866 -11.84621 -11.62541 -11.54084 -11.39303 -11.25212 -11.12416 -10.86999 -10.55959 -9.74055 -8.70989 -8.38209 -6.54566 0.56034 0.66393 1.39933 1.42457 1.52097 1.59935 2.27367 2.76196 2.96567 2.98155 3.84784 3.93302 4.09326 4.20279 4.25352 4.30882 4.38989 4.54559 4.55377 4.62041 4.65954 4.75765 4.82282 4.88926 4.96068 5.10930 5.18013 5.19665 5.21480 5.26552 5.27586 5.47934 5.50936 5.53452 5.62309 5.65919 5.85178 5.86391 6.07602 6.48716 6.87421 7.18776 8.68141 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026773 B = 0.004301 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.568060 B = 6509.188375 C = 6813.348664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.038 4.038 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.174 4.174 9 C 0.116 3.884 10 O -0.333 6.333 11 C 0.213 3.787 12 H 0.030 0.970 13 C -0.552 4.552 14 H 0.065 0.935 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.978 3.022 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.270 1.270 21 C -0.026 4.026 22 Cl -0.221 7.221 23 C -0.202 4.202 24 C -0.081 4.081 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 1.663 3.434 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.057 4.057 4 H 0.107 0.893 5 C -0.200 4.200 6 C -0.124 4.124 7 C -0.098 4.098 8 C -0.192 4.192 9 C 0.071 3.929 10 O -0.247 6.247 11 C 0.157 3.843 12 H 0.048 0.952 13 C -0.589 4.589 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.547 5.547 17 Si 0.802 3.198 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.195 1.195 21 C -0.089 4.089 22 Cl -0.195 7.195 23 C -0.221 4.221 24 C -0.099 4.099 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.846 1.545 3.442 15.318 hybrid contribution 1.291 -0.152 -0.495 1.391 sum -13.555 1.393 2.948 13.941 Atomic orbital electron populations 1.21801 0.94295 1.01953 1.02511 1.21577 0.96822 0.95541 1.01485 1.20078 0.88999 0.96925 0.99677 0.89294 1.21890 1.01940 1.00068 0.96135 1.19951 0.96485 1.00485 0.95522 1.21054 0.92608 0.98251 0.97918 1.20595 0.94012 1.04914 0.99728 1.19463 0.83346 0.95387 0.94740 1.86051 1.15431 1.69821 1.53439 1.20229 0.91038 0.86800 0.86220 0.95211 1.21238 1.01679 1.11244 1.24735 0.91654 1.25737 1.02147 0.95515 0.94039 1.69882 1.38171 1.20597 1.26000 0.85286 0.77705 0.78464 0.78386 1.19142 1.19928 1.19548 1.25402 0.84477 0.95662 1.03352 1.98634 1.40967 1.81239 1.98622 1.21345 0.96565 1.04779 0.99416 1.20818 0.91787 0.98296 0.99015 0.92037 0.91749 0.92609 0.92749 0.92976 0.90541 0.93049 0.93325 0.82978 0.85282 0.91440 0.86515 0.90828 0.87171 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 71.98 0.70 -1.52 16 2 C -0.12 -2.31 5.14 30.60 0.16 -2.16 16 3 C -0.04 -0.79 2.56 -11.54 -0.03 -0.82 16 4 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 5 C -0.14 -2.70 8.76 71.98 0.63 -2.06 16 6 C -0.12 -3.49 4.78 -19.85 -0.09 -3.59 16 7 C -0.08 -2.31 9.66 22.25 0.22 -2.09 16 8 C -0.17 -6.17 9.99 22.36 0.22 -5.95 16 9 C 0.12 4.96 5.95 22.51 0.13 5.09 16 10 O -0.33 -16.35 9.73 -92.40 -0.90 -17.25 16 11 C 0.21 10.89 2.19 29.85 0.07 10.96 16 12 H 0.03 1.65 5.39 -2.39 -0.01 1.64 16 13 C -0.55 -29.92 8.89 25.60 0.23 -29.69 16 14 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.03 1.39 5.29 84.65 0.45 1.84 16 16 N -0.91 -48.27 11.29 21.45 0.24 -48.03 16 17 Si 0.98 41.02 29.54 68.60 2.03 43.05 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.03 -1.24 6.17 71.98 0.44 -0.80 16 22 Cl -0.22 -9.40 25.63 -2.72 -0.07 -9.47 16 23 C -0.20 -8.23 7.05 22.37 0.16 -8.07 16 24 C -0.08 -2.68 8.75 22.26 0.19 -2.49 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.86 6.56 -2.39 -0.02 0.84 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 1.16 7.57 -2.39 -0.02 1.15 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.12 6.56 -2.39 -0.02 1.10 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.99 7.38 -2.38 -0.02 0.97 16 33 H 0.15 3.23 7.94 -2.91 -0.02 3.21 16 34 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.12 5.95 5.95 -2.38 -0.01 5.93 16 37 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.11 4.98 5.14 -2.91 -0.01 4.97 16 39 H 0.13 3.73 7.15 -2.91 -0.02 3.71 16 Total: -1.00 -56.94 324.78 5.80 -51.13 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.04 Total: 21.92 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.47 Total: -41.35 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.24 Total: -48.03 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.90 Total: -17.25 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 17 Polarization: -9.40 SS G_CDS: -0.07 Total: -9.47 kcal Total: -56.94 5.80 -51.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227322214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.409 kcal (2) G-P(sol) polarization free energy of solvation -56.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds