Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 H 1.08995 * 109.47276 * 304.99648 * 3 2 1 5 5 C 1.52994 * 109.47420 * 65.00160 * 3 2 1 6 6 C 1.50707 * 109.47138 * 184.99989 * 3 2 1 7 7 C 1.38269 * 119.94184 * 299.72947 * 6 3 2 8 8 C 1.38143 * 120.05562 * 179.72395 * 7 6 3 9 9 C 1.38738 * 119.93903 * 0.52234 * 8 7 6 10 10 O 1.35906 * 120.05034 * 179.72804 * 9 8 7 11 11 C 1.42896 * 116.99720 * 176.53386 * 10 9 8 12 12 H 1.09007 * 109.47318 * 26.93861 * 11 10 9 13 13 C 1.50700 * 109.47531 * 146.94547 * 11 10 9 14 14 H 1.08001 * 119.99636 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00514 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99531 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00436 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47260 * 59.99516 * 17 15 13 19 19 H 1.48501 * 109.47553 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47171 * 299.99732 * 17 15 13 21 21 C 1.53005 * 109.47225 * 266.94495 * 11 10 9 22 22 Cl 1.80302 * 109.47084 * 64.99670 * 21 11 10 23 23 C 1.38732 * 119.89126 * 359.74910 * 9 8 7 24 24 C 1.38135 * 119.94361 * 359.97438 * 23 9 8 25 25 H 1.08993 * 109.47230 * 300.00039 * 1 2 3 26 26 H 1.09005 * 109.47021 * 60.00266 * 1 2 3 27 27 H 1.08994 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46813 * 239.99661 * 2 1 3 29 29 H 1.09001 * 109.47284 * 120.00173 * 2 1 3 30 30 H 1.09005 * 109.47165 * 59.99549 * 5 3 2 31 31 H 1.08994 * 109.47534 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47066 * 300.00074 * 5 3 2 33 33 H 1.08004 * 119.97227 * 359.97401 * 7 6 3 34 34 H 1.07993 * 120.03315 * 180.29407 * 8 7 6 35 35 H 0.97001 * 119.99960 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47681 * 185.00030 * 21 11 10 37 37 H 1.09000 * 109.46477 * 305.00184 * 21 11 10 38 38 H 1.08001 * 120.02623 * 179.97438 * 23 9 8 39 39 H 1.08003 * 119.97754 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4443 -0.1238 7 6 4.3145 0.8210 0.8387 8 6 5.6912 0.8163 0.7245 9 6 6.2990 1.4471 -0.3514 10 8 7.6534 1.4486 -0.4630 11 6 8.2070 2.0506 -1.6348 12 1 7.5215 2.8095 -2.0120 13 6 9.5279 2.6913 -1.2944 14 1 9.9065 2.6439 -0.2840 15 6 10.2525 3.3389 -2.2724 16 7 9.7912 3.3970 -3.5026 17 14 11.8893 4.1336 -1.8502 18 1 12.8237 3.0999 -1.3365 19 1 12.4648 4.7591 -3.0680 20 1 11.6813 5.1733 -0.8104 21 6 8.4210 0.9793 -2.7060 22 17 6.8252 0.3154 -3.2193 23 6 5.5218 2.0766 -1.3128 24 6 4.1453 2.0735 -1.1971 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0699 1.5875 2.1491 31 1 1.9990 3.1540 1.3075 32 1 0.5490 2.1252 1.3969 33 1 3.8411 0.3339 1.6784 34 1 6.2941 0.3253 1.4740 35 1 10.3008 3.8528 -4.1906 36 1 8.9245 1.4207 -3.5661 37 1 9.0348 0.1758 -2.2987 38 1 5.9926 2.5687 -2.1511 39 1 3.5397 2.5638 -1.9450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227322215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -60.569670 kcal Electronic energy + Delta-G solvation = -19953.666155 eV Core-core repulsion = 16885.955766 eV Total energy + Delta-G solvation = -3067.710389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04764 -39.16034 -36.76840 -36.28634 -35.26053 -32.14648 -31.53286 -30.90315 -28.96666 -27.29370 -25.47714 -24.49643 -22.98590 -22.33574 -20.48537 -19.12516 -18.64960 -17.06733 -16.70062 -16.23177 -16.09875 -15.72791 -15.47087 -14.90994 -14.69721 -14.44831 -14.21468 -13.91917 -13.69654 -13.57912 -13.45286 -13.02965 -12.99604 -12.78805 -12.70238 -12.41968 -12.32416 -12.25328 -11.86763 -11.55796 -11.46528 -11.41743 -11.29802 -11.12481 -10.86509 -10.56091 -9.74950 -8.71093 -8.38242 -6.54586 0.55534 0.66147 1.39895 1.42509 1.52057 1.59909 2.27338 2.76056 2.96218 2.98031 3.84888 3.93895 4.07569 4.21616 4.26242 4.30870 4.38931 4.53818 4.54925 4.60061 4.69639 4.74150 4.84227 4.88941 4.99492 5.10241 5.18033 5.19862 5.21663 5.27024 5.29053 5.48279 5.51096 5.53796 5.62908 5.65474 5.85190 5.86305 6.07165 6.48646 6.87271 7.18713 8.68118 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.004191 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.530322 B = 6679.319096 C = 7107.317844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.041 4.041 4 H 0.075 0.925 5 C -0.141 4.141 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.173 4.173 9 C 0.116 3.884 10 O -0.333 6.333 11 C 0.212 3.788 12 H 0.030 0.970 13 C -0.552 4.552 14 H 0.065 0.935 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.978 3.022 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.270 1.270 21 C -0.026 4.026 22 Cl -0.221 7.221 23 C -0.202 4.202 24 C -0.089 4.089 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -4.087 5.841 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.059 4.059 4 H 0.093 0.907 5 C -0.198 4.198 6 C -0.123 4.123 7 C -0.093 4.093 8 C -0.192 4.192 9 C 0.070 3.930 10 O -0.247 6.247 11 C 0.157 3.843 12 H 0.048 0.952 13 C -0.589 4.589 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.802 3.198 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.195 1.195 21 C -0.089 4.089 22 Cl -0.195 7.195 23 C -0.220 4.220 24 C -0.107 4.107 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.020 -4.143 5.732 15.703 hybrid contribution 1.177 0.504 -0.556 1.396 sum -12.843 -3.640 5.176 14.318 Atomic orbital electron populations 1.21811 0.94540 1.02023 1.02325 1.21567 0.96632 0.95144 1.01846 1.20079 0.89026 0.97262 0.99573 0.90658 1.21879 1.01942 0.99956 0.96069 1.19938 0.96565 1.00559 0.95238 1.20899 0.91321 0.98118 0.98947 1.20602 0.95642 1.04525 0.98415 1.19463 0.83114 0.95143 0.95234 1.86052 1.17853 1.75928 1.44886 1.20230 0.93964 0.89749 0.80363 0.95209 1.21239 1.04499 1.36034 0.97125 0.91644 1.25741 1.01925 0.95438 0.94371 1.69880 1.40100 1.42533 1.02135 0.85283 0.77917 0.78656 0.77963 1.19143 1.19940 1.19535 1.25403 0.83333 0.97775 1.02376 1.98634 1.39064 1.88730 1.93047 1.21338 0.95467 1.04699 1.00539 1.20975 0.92931 0.98713 0.98099 0.91496 0.92784 0.92333 0.93328 0.91456 0.92169 0.93486 0.90685 0.83294 0.85282 0.91437 0.86510 0.90814 0.87108 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 71.98 0.70 -1.46 16 2 C -0.11 -2.12 5.14 30.59 0.16 -1.97 16 3 C -0.04 -0.86 2.56 -11.54 -0.03 -0.88 16 4 H 0.08 1.54 7.87 -2.39 -0.02 1.52 16 5 C -0.14 -2.49 8.76 71.98 0.63 -1.86 16 6 C -0.12 -3.47 4.78 -19.85 -0.09 -3.56 16 7 C -0.08 -2.15 8.75 22.25 0.19 -1.96 16 8 C -0.17 -6.15 9.99 22.37 0.22 -5.92 16 9 C 0.12 4.95 5.96 22.51 0.13 5.08 16 10 O -0.33 -16.33 9.73 -92.50 -0.90 -17.23 16 11 C 0.21 10.88 2.19 29.85 0.07 10.95 16 12 H 0.03 1.65 5.39 -2.38 -0.01 1.64 16 13 C -0.55 -29.92 8.88 25.60 0.23 -29.69 16 14 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 15 C 0.03 1.37 5.29 84.65 0.45 1.82 16 16 N -0.91 -48.29 11.29 21.45 0.24 -48.04 16 17 Si 0.98 41.03 29.54 68.60 2.03 43.06 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 C -0.03 -1.24 6.17 71.98 0.44 -0.79 16 22 Cl -0.22 -9.41 25.62 -2.72 -0.07 -9.48 16 23 C -0.20 -8.21 7.05 22.36 0.16 -8.06 16 24 C -0.09 -2.97 9.66 22.25 0.22 -2.75 16 25 H 0.07 0.82 6.56 -2.39 -0.02 0.81 16 26 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.18 7.58 -2.39 -0.02 1.16 16 30 H 0.06 1.01 7.37 -2.38 -0.02 0.99 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.04 6.57 -2.39 -0.02 1.02 16 33 H 0.15 3.25 7.15 -2.91 -0.02 3.23 16 34 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.28 13.79 8.31 -92.71 -0.77 13.01 16 36 H 0.12 5.95 5.95 -2.39 -0.01 5.94 16 37 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.11 5.01 5.12 -2.91 -0.01 5.00 16 39 H 0.13 3.76 7.94 -2.91 -0.02 3.74 16 Total: -1.00 -56.91 324.77 5.80 -51.10 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 1.04 Total: 21.65 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 3.47 Total: -41.06 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.24 Total: -48.04 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.90 Total: -17.23 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 17 Polarization: -9.41 SS G_CDS: -0.07 Total: -9.48 kcal Total: -56.91 5.80 -51.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227322215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.466 kcal (2) G-P(sol) polarization free energy of solvation -56.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds