Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47358 * 2 1 4 4 H 1.08997 * 109.46938 * 305.00064 * 3 2 1 5 5 C 1.53005 * 109.47332 * 64.99390 * 3 2 1 6 6 C 1.50694 * 109.47164 * 184.99572 * 3 2 1 7 7 C 1.38161 * 120.03245 * 300.31903 * 6 3 2 8 8 C 1.38246 * 120.05535 * 180.29819 * 7 6 3 9 9 C 1.38283 * 120.11395 * 359.67944 * 8 7 6 10 10 C 1.38116 * 120.05377 * 359.97438 * 9 8 7 11 11 C 1.38716 * 120.02736 * 119.99670 * 6 3 2 12 12 O 1.35905 * 120.05212 * 0.02562 * 11 6 3 13 13 C 1.42901 * 116.99669 * 179.43227 * 12 11 6 14 14 H 1.09003 * 109.47383 * 24.48286 * 13 12 11 15 15 C 1.50697 * 109.47306 * 144.48527 * 13 12 11 16 16 H 1.08003 * 119.99939 * 5.18118 * 15 13 12 17 17 C 1.37872 * 120.00364 * 185.17472 * 15 13 12 18 18 N 1.31516 * 120.00188 * 185.62822 * 17 15 13 19 19 Si 1.86800 * 119.99920 * 5.63681 * 17 15 13 20 20 H 1.48506 * 109.47024 * 269.99592 * 19 17 15 21 21 H 1.48495 * 109.47180 * 29.99551 * 19 17 15 22 22 H 1.48502 * 109.47166 * 149.99872 * 19 17 15 23 23 C 1.53006 * 109.46884 * 264.48564 * 13 12 11 24 24 Cl 1.80296 * 109.47148 * 65.56969 * 23 13 12 25 25 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47019 * 300.00778 * 1 2 3 27 27 H 1.08998 * 109.46781 * 59.99969 * 1 2 3 28 28 H 1.08995 * 109.47496 * 239.99319 * 2 1 3 29 29 H 1.09004 * 109.46940 * 119.99349 * 2 1 3 30 30 H 1.08994 * 109.46733 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47017 * 300.00690 * 5 3 2 32 32 H 1.09001 * 109.46774 * 59.99992 * 5 3 2 33 33 H 1.07997 * 119.97069 * 359.97438 * 7 6 3 34 34 H 1.08010 * 119.93931 * 179.70020 * 8 7 6 35 35 H 1.08000 * 119.97339 * 180.02562 * 9 8 7 36 36 H 1.08009 * 120.02978 * 180.02562 * 10 9 8 37 37 H 0.97005 * 119.99961 * 354.99595 * 18 17 15 38 38 H 1.09003 * 109.46555 * 185.56950 * 23 13 12 39 39 H 1.08996 * 109.46819 * 305.56586 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1267 1.3073 6 6 3.5419 1.4443 -0.1237 7 6 4.3151 0.8115 0.8306 8 6 5.6932 0.8181 0.7208 9 6 6.3011 1.4520 -0.3473 10 6 5.5323 2.0798 -1.3077 11 6 4.1491 2.0754 -1.1994 12 8 3.3905 2.6934 -2.1427 13 6 4.0839 3.3334 -3.2158 14 1 5.0628 2.8710 -3.3429 15 6 3.2890 3.1844 -4.4873 16 1 2.3105 2.7281 -4.4621 17 6 3.8109 3.6307 -5.6829 18 7 3.0754 3.6025 -6.7728 19 14 5.5627 4.2753 -5.7547 20 1 5.5633 5.7373 -5.4942 21 1 6.3852 3.5889 -4.7264 22 1 6.1321 4.0122 -7.1008 23 6 4.2595 4.8192 -2.8952 24 17 5.3462 5.0017 -1.4681 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9982 3.1544 1.3070 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1492 33 1 3.8427 0.3158 1.6657 34 1 6.2960 0.3270 1.4705 35 1 7.3778 1.4553 -0.4310 36 1 6.0076 2.5744 -2.1421 37 1 2.1924 3.2014 -6.7518 38 1 4.6991 5.3266 -3.7539 39 1 3.2881 5.2597 -2.6710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227761349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -45.971956 kcal Electronic energy + Delta-G solvation = -20668.663817 eV Core-core repulsion = 17601.586433 eV Total energy + Delta-G solvation = -3067.077384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84955 -37.36812 -35.69412 -35.19543 -33.42231 -31.00867 -30.35570 -29.25771 -28.19292 -24.91756 -24.54331 -23.10381 -21.66934 -20.44263 -19.45198 -17.97917 -17.36750 -15.71658 -15.30713 -14.92605 -14.50272 -14.39068 -14.06238 -13.77551 -13.50505 -13.15736 -13.07324 -12.66418 -12.50189 -12.26947 -12.07094 -11.84442 -11.54126 -11.51576 -11.19457 -11.03822 -10.86943 -10.68707 -10.53442 -10.28152 -10.14420 -10.01013 -9.84873 -9.52439 -9.01777 -8.77592 -8.32000 -7.44888 -6.82294 -4.51115 1.78794 1.98191 2.92678 3.11180 3.20129 3.31016 4.09104 4.14449 4.23723 4.90146 4.95704 5.07500 5.26692 5.36066 5.44098 5.52058 5.60339 5.68768 5.70497 5.72640 5.81025 5.84541 5.89594 6.03069 6.08170 6.15421 6.18008 6.24096 6.25388 6.46817 6.52452 6.56713 6.67264 6.87789 6.96211 7.02397 7.31352 7.38287 8.01104 8.21695 8.64573 9.19773 10.58313 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.006728 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.335343 B = 4160.809875 C = 4975.705670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.046 4.046 4 H 0.087 0.913 5 C -0.140 4.140 6 C -0.122 4.122 7 C -0.084 4.084 8 C -0.174 4.174 9 C -0.088 4.088 10 C -0.196 4.196 11 C 0.155 3.845 12 O -0.296 6.296 13 C 0.181 3.819 14 H 0.049 0.951 15 C -0.598 4.598 16 H 0.076 0.924 17 C 0.037 3.963 18 N -0.888 5.888 19 Si 1.033 2.967 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.275 1.275 23 C -0.050 4.050 24 Cl -0.223 7.223 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.275 0.725 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -3.586 13.285 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.064 4.064 4 H 0.106 0.894 5 C -0.197 4.197 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.192 4.192 9 C -0.107 4.107 10 C -0.215 4.215 11 C 0.108 3.892 12 O -0.208 6.208 13 C 0.125 3.875 14 H 0.066 0.934 15 C -0.635 4.635 16 H 0.094 0.906 17 C -0.170 4.170 18 N -0.520 5.520 19 Si 0.860 3.140 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.113 4.113 24 Cl -0.197 7.197 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.584 -2.854 12.319 12.907 hybrid contribution -0.812 -0.471 0.893 1.296 sum 1.772 -3.325 13.213 13.740 Atomic orbital electron populations 1.21827 0.96125 1.01116 1.01923 1.21553 0.95418 0.96248 1.01757 1.19956 0.91025 0.96289 0.99130 0.89426 1.21856 1.00632 1.00565 0.96641 1.19104 0.95503 1.02741 0.94900 1.20632 0.93344 0.98511 0.97766 1.20818 0.94574 1.04165 0.99675 1.20809 0.99082 0.96742 0.94039 1.21432 0.93307 1.04675 1.02038 1.18968 0.89788 0.91371 0.89045 1.86146 1.35535 1.65713 1.33455 1.20959 0.95629 0.86055 0.84903 0.93387 1.21992 1.06015 1.45962 0.89568 0.90624 1.25742 1.04789 0.94882 0.91615 1.70794 1.12244 1.39406 1.29556 0.84169 0.75265 0.77206 0.77386 1.20132 1.19690 1.20073 1.26193 0.95113 1.02862 0.87135 1.98670 1.71294 1.98356 1.51397 0.93181 0.92719 0.92554 0.91960 0.92397 0.92756 0.92657 0.93068 0.86495 0.86970 0.86782 0.85054 0.91411 0.88995 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 37.16 0.36 -1.44 16 2 C -0.11 -1.51 5.14 -26.73 -0.14 -1.64 16 3 C -0.05 -0.70 2.52 -91.77 -0.23 -0.93 16 4 H 0.09 1.57 6.99 -51.93 -0.36 1.21 16 5 C -0.14 -1.83 8.77 37.16 0.33 -1.51 16 6 C -0.12 -2.09 4.79 -104.48 -0.50 -2.59 16 7 C -0.08 -1.26 8.76 -39.61 -0.35 -1.61 16 8 C -0.17 -2.54 10.04 -39.56 -0.40 -2.94 16 9 C -0.09 -1.42 10.04 -39.61 -0.40 -1.81 16 10 C -0.20 -3.69 7.15 -39.44 -0.28 -3.97 16 11 C 0.16 3.08 6.06 -39.21 -0.24 2.84 16 12 O -0.30 -6.63 8.48 -19.44 -0.16 -6.79 16 13 C 0.18 4.18 1.75 -27.88 -0.05 4.13 16 14 H 0.05 1.13 3.88 -51.93 -0.20 0.92 16 15 C -0.60 -15.93 9.24 -34.44 -0.32 -16.25 16 16 H 0.08 2.20 8.04 -52.48 -0.42 1.78 16 17 C 0.04 1.00 5.43 -17.82 -0.10 0.90 16 18 N -0.89 -25.46 13.70 55.43 0.76 -24.70 16 19 Si 1.03 23.17 25.33 -169.99 -4.31 18.86 16 20 H -0.27 -5.77 6.76 56.52 0.38 -5.39 16 21 H -0.27 -5.67 6.36 56.52 0.36 -5.31 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.05 -1.06 5.93 37.16 0.22 -0.84 16 24 Cl -0.22 -4.24 25.76 -51.86 -1.34 -5.57 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 32 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 33 H 0.12 1.45 7.16 -52.49 -0.38 1.08 16 34 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.59 5.02 -52.48 -0.26 2.33 16 37 H 0.28 7.86 8.72 -40.82 -0.36 7.51 16 38 H 0.09 1.92 4.37 -51.93 -0.23 1.70 16 39 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -27.30 317.90 -7.83 -35.13 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.48 Total: 5.94 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -2.09 Total: -27.65 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.16 Total: -6.79 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.31 Total: 18.86 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -1.34 Total: -5.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.30 -7.83 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227761349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.845 kcal (2) G-P(sol) polarization free energy of solvation -27.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds