Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 O 1.42904 * 109.47008 * 119.99738 * 2 1 3 5 5 C 1.35923 * 116.99564 * 84.87682 * 4 2 1 6 6 C 1.38737 * 120.04790 * 354.57798 * 5 4 2 7 7 C 1.38125 * 119.95928 * 179.74961 * 6 5 4 8 8 C 1.38385 * 120.04125 * 0.52476 * 7 6 5 9 9 Cl 1.73596 * 119.95627 * 179.76922 * 8 7 6 10 10 C 1.38340 * 120.08352 * 359.74821 * 8 7 6 11 11 C 1.38163 * 120.04784 * 359.97438 * 10 8 7 12 12 C 1.50698 * 120.02554 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46923 * 265.01882 * 12 11 10 14 14 C 1.53002 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00368 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99503 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00089 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99693 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47072 * 90.00245 * 19 17 15 21 21 H 1.48500 * 109.47170 * 210.00255 * 19 17 15 22 22 H 1.48502 * 109.47069 * 330.00277 * 19 17 15 23 23 H 1.09004 * 109.47371 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47676 * 299.99943 * 1 2 3 25 25 H 1.09000 * 109.47120 * 60.00127 * 1 2 3 26 26 H 1.09001 * 109.47689 * 239.99611 * 2 1 3 27 27 H 1.09004 * 109.46977 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47020 * 299.99934 * 3 2 1 29 29 H 1.09002 * 109.46742 * 59.99938 * 3 2 1 30 30 H 1.08004 * 120.01935 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.97470 * 180.27916 * 7 6 5 32 32 H 1.08004 * 119.97363 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.47018 * 25.01635 * 12 11 10 34 34 H 1.08990 * 109.47020 * 145.02262 * 12 11 10 35 35 H 1.08999 * 109.47490 * 299.99991 * 13 12 11 36 36 H 1.09004 * 109.46983 * 60.00237 * 13 12 11 37 37 H 1.08995 * 109.47323 * 300.00052 * 14 13 12 38 38 H 1.09004 * 109.46609 * 60.00494 * 14 13 12 39 39 H 0.97000 * 119.99425 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1099 -2.0272 1.0987 6 6 1.6556 -2.7031 -0.0244 7 6 1.7666 -4.0781 -0.0939 8 6 2.3206 -4.7826 0.9605 9 17 2.4536 -6.5112 0.8734 10 6 2.7691 -4.1109 2.0837 11 6 2.6650 -2.7350 2.1546 12 6 3.1542 -2.0038 3.3781 13 6 1.9846 -1.7766 4.3380 14 6 2.4814 -1.0348 5.5806 15 6 1.3292 -0.8104 6.5257 16 1 0.3416 -1.1620 6.2664 17 6 1.5363 -0.1570 7.7221 18 7 2.7390 0.2708 8.0381 19 14 0.1083 0.1206 8.8940 20 1 0.0022 -1.0304 9.8262 21 1 0.3391 1.3659 9.6693 22 1 -1.1515 0.2469 8.1180 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.2195 -2.1540 -0.8459 31 1 1.4171 -4.6041 -0.9700 32 1 3.2008 -4.6625 2.9058 33 1 3.9212 -2.5985 3.8743 34 1 3.5741 -1.0423 3.0831 35 1 1.2176 -1.1819 3.8419 36 1 1.5647 -2.7382 4.6331 37 1 3.2482 -1.6297 6.0766 38 1 2.9016 -0.0731 5.2858 39 1 2.8845 0.7308 8.8797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -52.085596 kcal Electronic energy + Delta-G solvation = -19671.717101 eV Core-core repulsion = 16604.374609 eV Total energy + Delta-G solvation = -3067.342492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45074 -37.97846 -36.35324 -34.70634 -33.25452 -32.50997 -30.54856 -29.49672 -27.39899 -26.70386 -23.78041 -23.34854 -21.35452 -20.84628 -19.99324 -18.14122 -16.43763 -16.27393 -15.91969 -15.48785 -14.80125 -14.42105 -14.39858 -13.69081 -13.53108 -13.26916 -13.13574 -12.66918 -12.48186 -12.33591 -12.31276 -12.14544 -11.81608 -11.47774 -11.33533 -11.12837 -11.00925 -10.71573 -10.70353 -10.65713 -10.49563 -10.37061 -9.57511 -9.33050 -9.07680 -8.74125 -8.28587 -7.94784 -5.94035 -3.95595 1.24496 1.27680 2.18609 3.18404 3.35388 3.41301 3.45095 3.63077 4.50882 4.59385 4.68870 4.74202 4.81755 4.94097 5.13308 5.25041 5.40182 5.41685 5.43363 5.58485 5.62238 5.65015 5.77214 5.86194 6.01396 6.04524 6.14141 6.16729 6.23699 6.32688 6.46243 6.70829 6.90596 7.00020 7.23134 7.45842 7.75677 7.92091 8.07390 8.50707 9.11598 9.67867 11.17356 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004560 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.943603 B = 6138.707690 C = 7672.616514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.150 4.150 4 O -0.293 6.293 5 C 0.140 3.860 6 C -0.202 4.202 7 C -0.084 4.084 8 C -0.070 4.070 9 Cl -0.081 7.081 10 C -0.073 4.073 11 C -0.085 4.085 12 C -0.075 4.075 13 C -0.100 4.100 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 -5.067 -20.472 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.207 6.207 5 C 0.094 3.906 6 C -0.220 4.220 7 C -0.103 4.103 8 C -0.097 4.097 9 Cl -0.053 7.053 10 C -0.092 4.092 11 C -0.086 4.086 12 C -0.112 4.112 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.892 -4.976 -20.184 20.808 hybrid contribution -0.904 -0.082 0.457 1.016 sum -1.796 -5.058 -19.727 20.445 Atomic orbital electron populations 1.22399 0.95057 1.03111 1.03341 1.22452 0.94433 0.93895 0.87263 1.21856 1.02173 0.93462 1.03193 1.86274 1.80438 1.15786 1.38172 1.18906 0.94858 0.83122 0.93722 1.21165 1.07090 0.94582 0.99207 1.20686 0.98638 0.93294 0.97660 1.20711 1.07176 0.84226 0.97573 1.98343 1.97076 1.11414 1.98449 1.20837 0.98741 0.92905 0.96712 1.19547 1.00600 0.92396 0.96026 1.20649 0.99431 0.99468 0.91676 1.21587 0.95652 1.00137 0.96374 1.19102 0.96380 0.95175 0.90858 1.21272 0.95221 1.36355 1.02687 0.92822 1.25013 0.95539 0.95824 0.98072 1.69968 1.20747 1.39468 1.23433 0.86633 0.82908 0.77584 0.81110 1.20700 1.21261 1.19934 0.91893 0.90899 0.91215 0.91208 0.91604 0.90743 0.90949 0.84740 0.85227 0.84322 0.91377 0.90732 0.93147 0.93597 0.96682 0.96553 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.17 37.15 0.34 -1.44 16 2 C 0.08 0.81 2.85 -26.73 -0.08 0.74 16 3 C -0.15 -1.42 9.56 37.16 0.36 -1.07 16 4 O -0.29 -4.33 8.94 -19.50 -0.17 -4.50 16 5 C 0.14 2.04 6.57 -39.22 -0.26 1.78 16 6 C -0.20 -2.42 8.24 -39.44 -0.32 -2.75 16 7 C -0.08 -0.99 9.82 -39.57 -0.39 -1.37 16 8 C -0.07 -0.91 6.32 -39.49 -0.25 -1.16 16 9 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 10 C -0.07 -1.05 9.46 -39.57 -0.37 -1.42 16 11 C -0.08 -1.33 5.15 -104.48 -0.54 -1.87 16 12 C -0.07 -1.34 5.07 -27.88 -0.14 -1.48 16 13 C -0.10 -2.15 5.14 -26.73 -0.14 -2.29 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.06 0.63 6.90 -51.93 -0.36 0.28 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.63 6.31 -51.93 -0.33 0.31 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.13 1.28 5.43 -52.48 -0.28 1.00 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -31.15 338.74 -9.18 -40.32 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.98 Total: -3.17 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -2.34 Total: -25.68 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.17 Total: -4.50 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.15 -9.18 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.762 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds