Wall clock time and date at job start Tue Mar 31 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 O 1.42904 * 109.47008 * 119.99738 * 2 1 3 5 5 C 1.35923 * 116.99564 * 84.87682 * 4 2 1 6 6 C 1.38737 * 120.04790 * 354.57798 * 5 4 2 7 7 C 1.38125 * 119.95928 * 179.74961 * 6 5 4 8 8 C 1.38385 * 120.04125 * 0.52476 * 7 6 5 9 9 Cl 1.73596 * 119.95627 * 179.76922 * 8 7 6 10 10 C 1.38340 * 120.08352 * 359.74821 * 8 7 6 11 11 C 1.38163 * 120.04784 * 359.97438 * 10 8 7 12 12 C 1.50698 * 120.02554 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46923 * 265.01882 * 12 11 10 14 14 C 1.53002 * 109.47107 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00368 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99503 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00089 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99693 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47072 * 90.00245 * 19 17 15 21 21 H 1.48500 * 109.47170 * 210.00255 * 19 17 15 22 22 H 1.48502 * 109.47069 * 330.00277 * 19 17 15 23 23 H 1.09004 * 109.47371 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47676 * 299.99943 * 1 2 3 25 25 H 1.09000 * 109.47120 * 60.00127 * 1 2 3 26 26 H 1.09001 * 109.47689 * 239.99611 * 2 1 3 27 27 H 1.09004 * 109.46977 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47020 * 299.99934 * 3 2 1 29 29 H 1.09002 * 109.46742 * 59.99938 * 3 2 1 30 30 H 1.08004 * 120.01935 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.97470 * 180.27916 * 7 6 5 32 32 H 1.08004 * 119.97363 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.47018 * 25.01635 * 12 11 10 34 34 H 1.08990 * 109.47020 * 145.02262 * 12 11 10 35 35 H 1.08999 * 109.47490 * 299.99991 * 13 12 11 36 36 H 1.09004 * 109.46983 * 60.00237 * 13 12 11 37 37 H 1.08995 * 109.47323 * 300.00052 * 14 13 12 38 38 H 1.09004 * 109.46609 * 60.00494 * 14 13 12 39 39 H 0.97000 * 119.99425 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1099 -2.0272 1.0987 6 6 1.6556 -2.7031 -0.0244 7 6 1.7666 -4.0781 -0.0939 8 6 2.3206 -4.7826 0.9605 9 17 2.4536 -6.5112 0.8734 10 6 2.7691 -4.1109 2.0837 11 6 2.6650 -2.7350 2.1546 12 6 3.1542 -2.0038 3.3781 13 6 1.9846 -1.7766 4.3380 14 6 2.4814 -1.0348 5.5806 15 6 1.3292 -0.8104 6.5257 16 1 0.3416 -1.1620 6.2664 17 6 1.5363 -0.1570 7.7221 18 7 2.7390 0.2708 8.0381 19 14 0.1083 0.1206 8.8940 20 1 0.0022 -1.0304 9.8262 21 1 0.3391 1.3659 9.6693 22 1 -1.1515 0.2469 8.1180 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.2195 -2.1540 -0.8459 31 1 1.4171 -4.6041 -0.9700 32 1 3.2008 -4.6625 2.9058 33 1 3.9212 -2.5985 3.8743 34 1 3.5741 -1.0423 3.0831 35 1 1.2176 -1.1819 3.8419 36 1 1.5647 -2.7382 4.6331 37 1 3.2482 -1.6297 6.0766 38 1 2.9016 -0.0731 5.2858 39 1 2.8845 0.7308 8.8797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:51 Heat of formation + Delta-G solvation = -67.526650 kcal Electronic energy + Delta-G solvation = -19672.386675 eV Core-core repulsion = 16604.374609 eV Total energy + Delta-G solvation = -3068.012066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47201 -38.97847 -37.38492 -36.37629 -34.64973 -33.92776 -32.04068 -30.65283 -28.47943 -28.11108 -25.49776 -24.39456 -22.76201 -21.83695 -21.63909 -19.14320 -18.43994 -17.39650 -17.12868 -16.52807 -16.40241 -15.74538 -15.64248 -15.02019 -14.72243 -14.58662 -14.17916 -14.00164 -13.79301 -13.53865 -13.39486 -13.17805 -13.02934 -12.94195 -12.66058 -12.57962 -12.43026 -12.26779 -12.13678 -11.91085 -11.68087 -11.49720 -11.38621 -11.29094 -11.08421 -10.54797 -9.90100 -9.01338 -8.19247 -6.30482 0.21865 0.23633 1.20102 1.38839 1.40669 1.51783 2.26878 2.40956 2.58673 3.13245 3.67117 3.75923 3.85400 3.99562 4.11969 4.15417 4.19723 4.31588 4.46709 4.55319 4.70039 4.71787 4.76994 4.82364 4.87976 4.93513 4.98496 5.10182 5.18530 5.22650 5.25790 5.29958 5.31625 5.38613 5.52991 5.65325 5.78742 5.86894 6.26567 6.49510 6.85627 7.38310 8.92540 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004560 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.943603 B = 6138.707690 C = 7672.616514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 C -0.149 4.149 4 O -0.323 6.323 5 C 0.131 3.869 6 C -0.193 4.193 7 C -0.073 4.073 8 C -0.078 4.078 9 Cl -0.071 7.071 10 C -0.078 4.078 11 C -0.112 4.112 12 C -0.062 4.062 13 C -0.082 4.082 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.055 0.945 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.046 0.954 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -5.710 -22.372 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 C -0.206 4.206 4 O -0.237 6.237 5 C 0.085 3.915 6 C -0.212 4.212 7 C -0.091 4.091 8 C -0.105 4.105 9 Cl -0.043 7.043 10 C -0.097 4.097 11 C -0.113 4.113 12 C -0.100 4.100 13 C -0.120 4.120 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.157 0.843 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.012 0.988 38 H 0.008 0.992 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.445 -5.626 -22.098 22.934 hybrid contribution -0.395 0.115 0.984 1.066 sum -2.840 -5.511 -21.115 22.006 Atomic orbital electron populations 1.22389 0.94330 1.03109 1.03729 1.22791 0.95066 0.94201 0.86859 1.21901 1.01910 0.93068 1.03710 1.86255 1.80806 1.16134 1.40508 1.19068 0.94916 0.83330 0.94229 1.21442 1.06045 0.94815 0.98894 1.21072 0.96851 0.93232 0.97944 1.20805 1.07252 0.84884 0.97540 1.98347 1.97048 1.10473 1.98401 1.20870 0.98899 0.92456 0.97486 1.19335 1.03120 0.93031 0.95846 1.20363 0.97873 0.99483 0.92267 1.21314 0.96721 0.98990 0.94972 1.19000 0.95340 0.94076 0.92646 1.21679 0.95863 1.36881 1.03711 0.92639 1.25968 0.98564 0.95217 0.99941 1.70099 1.23051 1.39965 1.24182 0.85468 0.79265 0.77867 0.78589 1.19624 1.20469 1.18923 0.92045 0.93069 0.88255 0.88907 0.92084 0.87661 0.92937 0.81856 0.82176 0.84284 0.91185 0.91863 0.93981 0.93558 0.98812 0.99177 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 9.17 71.98 0.66 -2.51 16 2 C 0.07 1.31 2.85 30.59 0.09 1.40 16 3 C -0.15 -2.68 9.56 71.98 0.69 -2.00 16 4 O -0.32 -9.51 8.94 -92.68 -0.83 -10.34 16 5 C 0.13 3.71 6.57 22.50 0.15 3.85 16 6 C -0.19 -4.13 8.24 22.36 0.18 -3.94 16 7 C -0.07 -1.48 9.82 22.28 0.22 -1.26 16 8 C -0.08 -1.89 6.32 22.33 0.14 -1.75 16 9 Cl -0.07 -1.56 28.95 -2.72 -0.08 -1.64 16 10 C -0.08 -2.21 9.46 22.28 0.21 -2.00 16 11 C -0.11 -3.56 5.15 -19.77 -0.10 -3.66 16 12 C -0.06 -2.34 5.07 29.85 0.15 -2.18 16 13 C -0.08 -3.69 5.14 30.60 0.16 -3.53 16 14 C 0.03 1.47 4.97 29.85 0.15 1.62 16 15 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.04 5.46 84.66 0.46 0.51 16 18 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 19 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 23 H 0.06 1.10 6.90 -2.38 -0.02 1.08 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.40 6.31 -2.39 -0.02 1.39 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.16 2.46 5.43 -2.91 -0.02 2.45 16 31 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 34 H 0.06 2.45 7.69 -2.39 -0.02 2.44 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -68.60 338.74 5.81 -62.78 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.02 Total: 7.24 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 3.39 Total: -47.60 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.28 Total: -57.94 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.83 Total: -10.34 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -68.60 5.81 -62.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.743 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds