Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99785 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47328 * 305.00032 * 4 3 2 6 6 O 1.42904 * 109.47396 * 64.99567 * 4 3 2 7 7 C 1.52997 * 109.47504 * 184.99941 * 4 3 2 8 8 N 1.46496 * 109.47451 * 180.02562 * 7 4 3 9 9 C 1.38826 * 120.00377 * 180.02562 * 8 7 4 10 10 C 1.39802 * 119.57914 * 359.72215 * 9 8 7 11 11 C 1.38591 * 119.48613 * 179.78984 * 10 9 8 12 12 C 1.38394 * 118.68423 * 0.48123 * 11 10 9 13 13 C 1.40553 * 119.14616 * 359.74120 * 12 11 10 14 14 C 1.41314 * 119.78532 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99825 * 0.02957 * 14 13 12 16 16 C 1.40025 * 120.00194 * 180.02562 * 14 13 12 17 17 N 1.30741 * 119.99959 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99873 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46924 * 60.00351 * 18 16 14 20 20 H 1.48496 * 109.46787 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46974 * 300.00443 * 18 16 14 22 22 N 1.31952 * 119.58890 * 179.97438 * 9 8 7 23 23 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47371 * 299.99984 * 1 2 3 25 25 H 1.09000 * 109.47527 * 60.00229 * 1 2 3 26 26 H 1.09002 * 109.47085 * 299.99903 * 3 2 1 27 27 H 1.09001 * 109.47417 * 60.00029 * 3 2 1 28 28 H 1.09003 * 109.47390 * 59.99367 * 5 4 3 29 29 H 1.09004 * 109.47759 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46786 * 300.00010 * 5 4 3 31 31 H 0.96708 * 113.99258 * 60.00195 * 6 4 3 32 32 H 1.09004 * 109.46881 * 300.00361 * 7 4 3 33 33 H 1.09002 * 109.47016 * 59.99741 * 7 4 3 34 34 H 0.97008 * 120.00373 * 359.97438 * 8 7 4 35 35 H 1.07992 * 120.25566 * 0.02562 * 10 9 8 36 36 H 1.08009 * 120.66208 * 180.22490 * 11 10 9 37 37 H 1.08000 * 120.42668 * 179.77008 * 12 11 10 38 38 H 0.96994 * 119.99732 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.3418 1.1756 1.1826 6 8 4.2803 1.4278 -1.2201 7 6 4.0870 3.4253 0.1263 8 7 5.5426 3.5906 0.1263 9 6 6.0973 4.8588 0.2317 10 6 5.2585 5.9728 0.3314 11 6 5.8144 7.2376 0.4408 12 6 7.1929 7.3599 0.4378 13 6 7.9826 6.2022 0.3300 14 6 9.3915 6.3115 0.3250 15 1 9.8581 7.2822 0.4044 16 6 10.1826 5.1612 0.2172 17 7 9.6178 3.9860 0.1206 18 14 12.0451 5.3056 0.2114 19 1 12.4967 5.9341 1.4787 20 1 12.6460 3.9534 0.0872 21 1 12.4729 6.1443 -0.9370 22 7 7.4094 4.9981 0.2313 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8030 2.2371 -0.8900 27 1 1.8030 2.2372 0.8900 28 1 4.0961 0.1173 1.0931 29 1 5.4249 1.2980 1.1829 30 1 3.9313 1.5663 2.1137 31 1 3.9436 1.8670 -2.0132 32 1 3.6598 3.9700 -0.7157 33 1 3.6765 3.8160 1.0575 34 1 6.1189 2.8137 0.0535 35 1 4.1858 5.8484 0.3270 36 1 5.1842 8.1110 0.5226 37 1 7.6559 8.3323 0.5179 38 1 10.1658 3.1893 0.0455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253070708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = -14.510919 kcal Electronic energy + Delta-G solvation = -19722.316202 eV Core-core repulsion = 16690.939528 eV Total energy + Delta-G solvation = -3031.376674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.90783 -37.83722 -34.56515 -33.22731 -32.12652 -30.34244 -29.35041 -28.86985 -27.42459 -25.52100 -25.21189 -21.53172 -20.68434 -20.15320 -17.53773 -16.96497 -16.52538 -15.70570 -15.45366 -15.04754 -14.71755 -14.37000 -14.11566 -14.03517 -13.84258 -13.34704 -13.19159 -12.77180 -12.50881 -12.38272 -12.08651 -11.89971 -11.86560 -11.67589 -11.14509 -11.03242 -10.98323 -10.63941 -10.41367 -10.12003 -9.93087 -9.89070 -9.46894 -8.87827 -7.89365 -7.79476 -7.48067 -6.49464 -6.29461 -4.45265 1.43404 2.39793 2.91459 3.13087 3.15369 3.25227 3.32626 3.97774 4.01264 4.31422 4.65690 4.71717 4.85892 4.86525 4.87024 4.90665 5.22042 5.30778 5.42916 5.76326 5.83728 5.96959 5.98980 6.12387 6.15559 6.34140 6.56313 6.87579 6.90425 6.94945 7.28032 7.60472 7.66915 7.82522 7.92865 8.19476 8.38410 8.72118 8.82823 9.14426 10.27621 10.43357 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003744 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.799953 B = 7476.534383 C = 8332.321372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.227 6.227 3 C -0.115 4.115 4 C 0.141 3.859 5 C -0.140 4.140 6 O -0.541 6.541 7 C 0.124 3.876 8 N -0.730 5.730 9 C 0.412 3.588 10 C -0.371 4.371 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.293 3.707 14 C -0.434 4.434 15 H 0.082 0.918 16 C 0.071 3.929 17 N -0.713 5.713 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 N -0.531 5.531 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.376 0.624 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.401 0.599 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 -6.720 -0.221 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S -0.001 6.001 3 C -0.265 4.265 4 C 0.099 3.901 5 C -0.197 4.197 6 O -0.346 6.346 7 C -0.005 4.005 8 N -0.368 5.368 9 C 0.172 3.828 10 C -0.397 4.397 11 C -0.056 4.056 12 C -0.341 4.341 13 C 0.166 3.834 14 C -0.466 4.466 15 H 0.100 0.900 16 C -0.154 4.154 17 N -0.335 5.335 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 N -0.252 5.252 23 H 0.118 0.882 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.223 0.777 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.761 -8.887 0.110 15.551 hybrid contribution -0.925 2.079 -0.354 2.303 sum -13.686 -6.808 -0.244 15.288 Atomic orbital electron populations 1.23460 0.95967 1.06316 1.04666 1.87146 1.05151 1.09919 1.97927 1.24209 1.00757 0.95825 1.05665 1.21118 0.88472 0.93258 0.87302 1.21771 1.02398 1.00600 0.94950 1.86636 1.70073 1.63114 1.14795 1.21613 0.83949 0.93765 1.01133 1.43972 1.03405 1.06226 1.83185 1.18511 0.90454 0.84034 0.89780 1.20575 0.97137 0.93103 1.28856 1.20581 0.94568 0.95204 0.95270 1.21532 0.93515 0.98530 1.20482 1.18190 0.93217 0.85509 0.86517 1.19548 0.89894 0.94014 1.43166 0.89960 1.26051 1.00635 0.95102 0.93660 1.70135 1.36515 0.98331 1.28506 0.86438 0.82572 0.78270 0.79771 1.19040 1.20325 1.19042 1.68209 1.06242 1.25685 1.25075 0.88222 0.90711 0.90747 0.89723 0.89027 0.90929 0.90825 0.91017 0.77718 0.92957 0.92274 0.76274 0.89471 0.89047 0.88750 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 10.76 101.05 1.09 0.09 16 2 S -0.23 -2.43 20.42 -107.50 -2.19 -4.62 16 3 C -0.12 -1.16 5.17 37.16 0.19 -0.96 16 4 C 0.14 1.77 0.73 -90.62 -0.07 1.71 16 5 C -0.14 -1.86 8.35 37.16 0.31 -1.55 16 6 O -0.54 -7.41 12.48 -35.23 -0.44 -7.85 16 7 C 0.12 1.85 3.99 -4.05 -0.02 1.83 16 8 N -0.73 -14.59 5.31 -60.39 -0.32 -14.91 16 9 C 0.41 10.11 7.65 -155.32 -1.19 8.92 16 10 C -0.37 -8.54 9.34 -38.87 -0.36 -8.91 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.32 -8.12 9.83 -38.65 -0.38 -8.50 16 13 C 0.29 8.24 6.55 -85.00 -0.56 7.69 16 14 C -0.43 -11.90 9.14 -37.74 -0.34 -12.24 16 15 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 16 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 17 N -0.71 -19.25 11.46 55.55 0.64 -18.62 16 18 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 N -0.53 -14.83 7.89 -10.33 -0.08 -14.91 16 23 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 24 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 29 H 0.07 1.13 6.86 -51.93 -0.36 0.77 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.38 4.04 9.05 45.56 0.41 4.45 16 32 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 33 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 34 H 0.40 8.39 7.31 -40.82 -0.30 8.09 16 35 H 0.09 1.77 6.68 -52.49 -0.35 1.41 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -30.92 329.15 -8.98 -39.90 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -4.69 Total: 13.44 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.82 Total: -11.33 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.23 Total: -48.44 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.44 Total: -7.85 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.19 Total: -4.62 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.92 -8.98 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253070708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.388 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds